PDB: 5515 件ウェブページステータス検索Chemie searchBIRD

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8EK4	De novo designed ice-binding proteins from twist-constrained helices 分子名称: Ice-binding protein TIP-99a 著者 Bera, A.K, De Haas, R.J. 登録日 2022-09-19 公開日 2023-07-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 De novo designed ice-binding proteins from twist-constrained helices. Proc.Natl.Acad.Sci.USA, 120, 2023
5WLJ	De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH1 分子名称: De Novo Metal Binding Helical Bundle, ZINC ION 著者 Zhang, S.-Q, Liu, L, DeGrado, W.F. 登録日 2017-07-27 公開日 2018-01-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles. J. Am. Chem. Soc., 140, 2018
6WI5	De novo designed protein Foldit4 分子名称: De novo designed protein Foldit4 著者 Bera, A.K, Koepnick, B, Boykov, A, Baker, D. 登録日 2020-04-08 公開日 2020-04-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 De novo design of protein logic gates. Science, 368, 2020
8JPA	De novo design cavitated protein without predefined topology 分子名称: De novo design cavitated protein 著者 Hu, X, Xu, Y. 登録日 2023-06-11 公開日 2023-06-28 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 De novo design of cavity-containing proteins with a backbone-centered neural network energy function. Structure, 32, 2024
8HDU	De novo design cavitated protein without predefined topology 分子名称: De novo design cavitated protein 著者 Hu, X, Xu, Y. 登録日 2022-11-06 公開日 2023-01-18 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 De novo design of cavity-containing proteins with a backbone-centered neural network energy function. Structure, 32, 2024
8HDV	De novo design cavitated protein without predefined topology 分子名称: De novo design cavitated protein 著者 Hu, X, Xu, Y. 登録日 2022-11-06 公開日 2023-01-18 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 De novo design of cavity-containing proteins with a backbone-centered neural network energy function. Structure, 32, 2024
7SKN	De novo synthetic protein DIG8-CC (tetragonal space group) 分子名称: De novo synthetic protein DIG8-CC 著者 Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X. 登録日 2021-10-21 公開日 2022-10-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 De novo design of immunoglobulin-like domains Nat Commun, 13, 2022
7SKP	De novo synthetic protein DIG14 (tetragonal space group) 分子名称: De novo synthetic protein DIG14 著者 Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X. 登録日 2021-10-21 公開日 2022-10-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 De novo design of immunoglobulin-like domains Nat Commun, 13, 2022
7SKO	De novo synthetic protein DIG8-CC (orthogonal space group) 分子名称: De novo synthetic protein DIG8-CC, MAGNESIUM ION 著者 Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X. 登録日 2021-10-21 公開日 2022-10-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 De novo design of immunoglobulin-like domains Nat Commun, 13, 2022
6MSP	De novo Designed Protein Foldit3 分子名称: De novo Designed Protein Foldit3 著者 Liu, G, Ishida, Y, Swapna, G.V.T, Kleinfelter, S, Koepnick, B, Baker, D, Montelione, G.T. 登録日 2018-10-17 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De novo protein design by citizen scientists. Nature, 570, 2019
8TN1	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - apo 分子名称: De novo designed 4 helix bundles, SULFATE ION 著者 Lu, L, DeGrado, W.F. 登録日 2023-08-01 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8TN6	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo rucaparib 分子名称: De novo designed protein, Rucaparib 著者 Lu, L, DeGrado, W.F. 登録日 2023-08-01 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.36 Å) 主引用文献 De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8GJI	De novo design of high-affinity protein binders to bioactive helical peptides 分子名称: GCG binder, Glucagon 著者 Torres, S.V, Leung, P.J.Y, Bera, A.K, Baker, D, Kang, A. 登録日 2023-03-15 公開日 2024-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 De novo design of high-affinity binders of bioactive helical peptides. Nature, 626, 2024
8GJG	De novo design of high-affinity protein binders to bioactive helical peptides 分子名称: gluc_A04_0005, gluc_A04_0005 Binder 著者 Leung, P.J.Y, Bera, A.K, Torres, S.V, Baker, D, Kang, A. 登録日 2023-03-15 公開日 2024-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 De novo design of high-affinity binders of bioactive helical peptides. Nature, 626, 2024
7CBC	Crystal structure of a de novo designed switch protein caging a hemagglutinin binder 分子名称: De novo designed switch protein caging a hemagglutinin binder (sCageHA267_1S), ETHANOL 著者 Lee, H, Oh, B.-H, Baker, D. 登録日 2020-06-11 公開日 2020-12-23 最終更新日 2021-03-31 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 De novo design of modular and tunable protein biosensors. Nature, 591, 2021
6X1K	Solution NMR structure of de novo designed TMB2.3 分子名称: De novo designed transmembrane beta-barrel TMB2.3 著者 Liang, B, Vorobieva, A.A, Chow, C.M, Baker, D, Tamm, L.K. 登録日 2020-05-19 公開日 2021-02-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De novo design of transmembrane beta barrels. Science, 371, 2021
1PBZ	DE NOVO DESIGNED PEPTIDE-METALLOPORPHYRIN COMPLEX, SOLUTION STRUCTURE 分子名称: COPROPORPHYRIN I CONTAINING CO(III), De novo designed cyclic peptide 著者 Wang, J, Rosenblatt, M.M, Suslick, K.S. 登録日 2003-05-15 公開日 2003-12-09 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 De novo designed cyclic-peptide heme complexes Proc.Natl.Acad.Sci.USA, 100, 2003
6E5C	Solution NMR structure of a de novo designed double-stranded beta-helix 分子名称: De novo beta protein 著者 Marcos, E, Chidyausiku, T.M, McShan, A, Evangelidis, T, Nerli, S, Sgourakis, N, Tripsianes, K, Baker, D. 登録日 2018-07-19 公開日 2018-11-07 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 De novo design of a non-local beta-sheet protein with high stability and accuracy. Nat. Struct. Mol. Biol., 25, 2018
7M5T	Solution NMR structure of de novo designed protein 0515 分子名称: De novo designed protein 0515 著者 Ramelot, T.A, Hao, J, Baker, D, Montelione, G.T. 登録日 2021-03-24 公開日 2021-12-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De novo protein design by deep network hallucination. Nature, 600, 2021
7UWY	NMR solution structure of the De novo designed small beta-barrel protein 29_bp_sh3 分子名称: De novo designed small beta-barrel protein 29_bp_sh3 著者 Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D. 登録日 2022-05-04 公開日 2023-03-22 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023
7UWZ	NMR solution structure of the De novo designed small beta-barrel protein 33_bp_sh3 分子名称: De novo designed small beta-barrel protein 33_bp_sh3 著者 Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D. 登録日 2022-05-04 公開日 2023-03-22 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023
8TNB	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo mefuparib 分子名称: 5-fluoro-2-{4-[(methylamino)methyl]phenyl}-1-benzofuran-7-carboxamide, De novo designed protein 著者 Lu, L, DeGrado, W.F. 登録日 2023-08-01 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8TNC	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo niraparib 分子名称: 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide, De novo designed protein 著者 Lu, L, DeGrado, W.F. 登録日 2023-08-01 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8TND	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo veliparib 分子名称: (2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium, De novo designed protein, SULFATE ION 著者 Lu, L, DeGrado, W.F. 登録日 2023-08-01 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8T5F	De novo design of high-affinity protein binders to bioactive helical peptides 分子名称: Parathyroid hormone 著者 Torres, S.V, Leung, P.J.Y, Bera, A.K, Baker, D, Kang, A. 登録日 2023-06-13 公開日 2024-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 De novo design of high-affinity binders of bioactive helical peptides. Nature, 626, 2024

 

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