PDB: 36 件ウェブページステータス検索Chemie searchBIRD

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1V8O	Crystal Structure of PAE2754 from Pyrobaculum aerophilum 分子名称: CHLORIDE ION, hypothetical protein PAE2754 著者 Arcus, V.L, Backbro, K, Roos, A, Daniel, E.L, Baker, E.N. 登録日 2004-01-12 公開日 2004-02-10 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease J.Biol.Chem., 279, 2004
1V8P	Crystal structure of PAE2754 from Pyrobaculum aerophilum 分子名称: CHLORIDE ION, hypothetical protein PAE2754 著者 Arcus, V.L, Backbro, K, Roos, A, Daniel, E.L, Baker, E.N. 登録日 2004-01-12 公開日 2004-02-10 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease J.Biol.Chem., 279, 2004
1W8I	The Structure of gene product af1683 from Archaeoglobus fulgidus. 分子名称: PUTATIVE VAPC RIBONUCLEASE AF_1683 著者 Midwest Center for Structural Genomics (MCSG), Cuff, M.E, Zhang, R, Ginell, S.L, Xu, X, Savchenko, A, Edwards, A, Joachimiak, A. 登録日 2004-09-22 公開日 2004-11-16 最終更新日 2017-06-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The Structure of Gene Product Af1683 from Archaeoglobus Fulgidus To be Published
1Y82	Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus 分子名称: UNKNOWN ATOM OR ION, hypothetical protein 著者 Horanyi, P, Tempel, W, Habel, J, Chen, L, Lee, D, Nguyen, D, Chang, S.-H, Florence, Q, Zhou, W, Lin, D, Zhang, H, Praissman, J, Jenney Jr, F.E, Adams, M.W.W, Liu, Z.-J, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG) 登録日 2004-12-10 公開日 2005-01-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus To be published
2FE1	Crystal Structure of PAE0151 from Pyrobaculum aerophilum 分子名称: CALCIUM ION, CHLORIDE ION, MANGANESE (II) ION, ... 著者 Bunker, R.D, Baker, E.N, Arcus, V.L. 登録日 2005-12-15 公開日 2005-12-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon. Proteins, 72, 2008
2BSQ	FitAB bound to DNA 分子名称: IR36, FORWARD STRAND, REVERSE STRAND, ... 著者 Mattison, K, Wilbur, J.S, So, M, Brennan, R.G. 登録日 2005-05-23 公開日 2006-08-24 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of Fitab from Neisseria Gonorrhoeae Bound to DNA Reveals a Tetramer of Toxin-Antitoxin Heterodimers Containing Pin Domains and Ribbon-Helix-Helix Motifs. J.Biol.Chem., 281, 2006
2H1O	Structure of FitAB bound to IR36 DNA fragment 分子名称: IR36-strand 1, IR36-strand 2, Trafficking protein A, ... 著者 Mattison, K, Wilbur, J.S, So, M, Brennan, R.G. 登録日 2006-05-16 公開日 2006-09-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs. J.Biol.Chem., 281, 2006
2H1C	Crystal Structure of FitAcB from Neisseria gonorrhoeae 分子名称: ACETATE ION, MAGNESIUM ION, SULFATE ION, ... 著者 Mattison, K, Wilbur, J.S, So, M, Brennan, R.G. 登録日 2006-05-16 公開日 2006-09-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs. J.Biol.Chem., 281, 2006
3DBO	Crystal structure of a member of the VapBC family of toxin-antitoxin systems, VapBC-5, from Mycobacterium tuberculosis 分子名称: ACETATE ION, BETA-MERCAPTOETHANOL, SODIUM ION, ... 著者 Miallau, L, Cascio, D, Eisenberg, D, Integrated Center for Structure and Function Innovation (ISFI), TB Structural Genomics Consortium (TBSGC) 登録日 2008-06-02 公開日 2008-07-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Structure and Proposed Activity of a Member of the VapBC Family of Toxin-Antitoxin Systems: VapBC-5 FROM MYCOBACTERIUM TUBERCULOSIS. J.Biol.Chem., 284, 2009
3H87	Rv0301 Rv0300 Toxin Antitoxin Complex from Mycobacterium tuberculosis 分子名称: BETA-MERCAPTOETHANOL, GLYCEROL, IMIDAZOLE, ... 著者 Min, A, Sawaya, M.R, Cascio, D, Eisenberg, D, Integrated Center for Structure and Function Innovation (ISFI) 登録日 2009-04-28 公開日 2009-05-05 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 The crystal structure of the Rv0301-Rv0300 VapBC-3 toxin-antitoxin complex from M. tuberculosis reveals a Mg(2+) ion in the active site and a putative RNA-binding site. Protein Sci., 21, 2012
3I8O	A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661. 分子名称: ACETATE ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Tan, K, Chhor, G, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2009-07-09 公開日 2009-07-21 最終更新日 2019-07-24 実験手法 X-RAY DIFFRACTION (2.638 Å) 主引用文献 A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661. To be Published
3IX7	Crystal structure of a domain of functionally unknown protein from Thermus thermophilus HB8 分子名称: ACETIC ACID, Uncharacterized protein TTHA0540 著者 Chang, C, Li, H, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2009-09-03 公開日 2009-09-22 最終更新日 2017-11-01 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of a domain of functionally unknown protein from Thermus thermophilus HB8 To be Published
3TND	Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex 分子名称: Antitoxin VapB, SODIUM ION, SULFATE ION, ... 著者 Dienemann, C, Boggild, A, Winther, K.S, Gerdes, K, Brodersen, D.E. 登録日 2011-09-01 公開日 2011-11-02 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of the VapBC Toxin-Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly. J.Mol.Biol., 414, 2011
3ZVK	Crystal structure of VapBC2 from Rickettsia felis bound to a DNA fragment from their promoter 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB, DNA, ... 著者 Mate, M.J, Ortiz-Lombardia, M, Cambillau, C. 登録日 2011-07-25 公開日 2011-12-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of the DNA-Bound Vapbc2 Antitoxin/Toxin Pair from Rickettsia Felis. Nucleic Acids Res., 40, 2012
4CHG	Crystal structure of VapBC15 complex from Mycobacterium tuberculosis 分子名称: ANTITOXIN VAPB15, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Das, U, Pogenberg, V, Tiruttani Subhramanyam, U.K, Wilmanns, M, Srinivasan, A, Gourinath, S. 登録日 2013-12-02 公開日 2014-11-12 最終更新日 2018-03-07 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of the Vapbc-15 Complex from Mycobacterium Tuberculosis Reveals a Two-Metal Ion Dependent Pin-Domain Ribonuclease And a Variable Mode of Toxin-Antitoxin Assembly. J.Struct.Biol., 188, 2014
4XGQ	Crystal structure of addiction module from Mycobacterial species 分子名称: Antitoxin VapB30, MAGNESIUM ION, Ribonuclease VapC30 著者 Lee, B.-J, Lee, I.-G, Lee, S.J. 登録日 2015-01-02 公開日 2015-08-12 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural and functional studies of the Mycobacterium tuberculosis VapBC30 toxin-antitoxin system: implications for the design of novel antimicrobial peptides Nucleic Acids Res., 43, 2015
4XGR	Crystal structure of addiction module from Mycobacterial species 分子名称: Antitoxin VapB30, MAGNESIUM ION, Ribonuclease VapC30 著者 Lee, B.-J, Lee, I.-G, Lee, S.J. 登録日 2015-01-02 公開日 2015-08-12 最終更新日 2015-09-16 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural and functional studies of the Mycobacterium tuberculosis VapBC30 toxin-antitoxin system: implications for the design of novel antimicrobial peptides Nucleic Acids Res., 43, 2015
5ECD	Structure of the Shigella flexneri VapC mutant D98N crystal form 1 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, tRNA(fMet)-specific endonuclease VapC 著者 Xu, K. 登録日 2015-10-20 公開日 2016-02-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri. Proteins, 84, 2016
5ED0	Structure of the Shigella flexneri VapC mutant D7N 分子名称: tRNA(fMet)-specific endonuclease VapC 著者 Xu, K, Dedic, E, Brodersen, D.E. 登録日 2015-10-20 公開日 2016-02-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri. Proteins, 84, 2016
5ECW	Structure of the Shigella flexneri VapC mutant D7A 分子名称: tRNA(fMet)-specific endonuclease VapC 著者 Xu, K, Dedic, E, Brodersen, D.E. 登録日 2015-10-20 公開日 2016-02-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri. Proteins, 84, 2016
5SV2	Toxin VapC21 from Mycobacterium tuberculosis 分子名称: Ribonuclease VapC21 著者 Valadares, N.F. 登録日 2016-08-04 公開日 2016-09-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.31 Å) 主引用文献 Crystal structure of VapC21 from Mycobacterium tuberculosis at 1.31 angstrom resolution. Biochem.Biophys.Res.Commun., 478, 2016
5ECY	Structure of the Shigella flexneri VapC mutant D98N crystal form 2 分子名称: tRNA(fMet)-specific endonuclease VapC 著者 Xu, K, Dedic, E, Brodersen, D.E. 登録日 2015-10-20 公開日 2016-10-19 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural analysis on the active site architecture of an activated VapC toxin from Shigella flexneri to be published
5L6L	Structure of Caulobacter crescentus VapBC1 bound to operator DNA 分子名称: DNA (27-MER), Ribonuclease VapC, VapB family protein 著者 Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. 登録日 2016-05-30 公開日 2016-12-28 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res., 45, 2017
5L6M	Structure of Caulobacter crescentus VapBC1 (VapB1deltaC:VapC1 form) 分子名称: GLYCEROL, MALONATE ION, Ribonuclease VapC, ... 著者 Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. 登録日 2016-05-30 公開日 2016-12-28 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res., 45, 2017
5K8J	Structure of Caulobacter crescentus VapBC1 (apo form) 分子名称: GLYCEROL, Ribonuclease VapC, VapB family protein 著者 Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. 登録日 2016-05-30 公開日 2016-12-28 最終更新日 2018-01-17 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res., 45, 2017

 

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