Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2QDB
DownloadVisualize
BU of 2qdb by Molmil
Crystal structure of staphylococcal nuclease variant E75Q/D21N/T33V/T41I/S59A/P117G/S128A at 100 K
分子名称: PHOSPHATE ION, Thermonuclease
著者Baran, K.L, Schlessman, J.L, Garcia-Moreno, B.E.
登録日2007-06-20
公開日2008-07-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease.
J.Mol.Biol., 379, 2008
2QFP
DownloadVisualize
BU of 2qfp by Molmil
Crystal structure of red kidney bean purple acid phosphatase in complex with fluoride
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, FE (III) ION, FLUORIDE ION, ...
著者Guddat, L.W, Schenk, G.S, Gahan, L.R, Elliot, T.W, Leung, E.
登録日2007-06-27
公開日2008-10-14
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of a purple acid phosphatase, representing different steps of this enzyme's catalytic cycle.
Bmc Struct.Biol., 8, 2008
2QKS
DownloadVisualize
BU of 2qks by Molmil
Crystal structure of a Kir3.1-prokaryotic Kir channel chimera
分子名称: Kir3.1-prokaryotic Kir channel chimera, POTASSIUM ION, nonyl beta-D-glucopyranoside
著者Nishida, M, MacKinnon, R.
登録日2007-07-11
公開日2007-08-28
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a Kir3.1-prokaryotic Kir channel chimera.
Embo J., 26, 2007
2QL6
DownloadVisualize
BU of 2ql6 by Molmil
human nicotinamide riboside kinase (NRK1)
分子名称: (1R)-1-[4-(AMINOCARBONYL)-1,3-THIAZOL-2-YL]-1,4-ANHYDRO-D-RIBITOL, ADENOSINE-5'-DIPHOSPHATE, nicotinamide riboside kinase 1
著者Khan, J.A, Xiang, S, Tong, L.
登録日2007-07-12
公開日2007-10-02
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of human nicotinamide riboside kinase
Structure, 15, 2007
2QMZ
DownloadVisualize
BU of 2qmz by Molmil
Quinone Reductase 2 in Complex with Dopamine
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, L-DOPAMINE, Ribosyldihydronicotinamide dehydrogenase, ...
著者Fu, Y, Buryanovskyy, L, Zhang, Z.
登録日2007-07-17
公開日2008-06-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Quinone Reductase 2 Regulates Catecholamine Oxidation
To be Published
2QSQ
DownloadVisualize
BU of 2qsq by Molmil
Crystal structure of the N-terminal domain of carcinoembryonic antigen (CEA)
分子名称: CHLORIDE ION, Carcinoembryonic antigen-related cell adhesion molecule 5, GLYCEROL
著者Le Trong, I, Korotkova, N, Moseley, S.L, Stenkamp, R.E.
登録日2007-07-31
公開日2008-01-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Binding of Dr adhesins of Escherichia coli to carcinoembryonic antigen triggers receptor dissociation.
Mol.Microbiol., 67, 2008
2QT9
DownloadVisualize
BU of 2qt9 by Molmil
Human dipeptidyl peptidase iv/cd26 in complex with a 4-aryl cyclohexylalanine inhibitor
分子名称: (2S,3S)-3-AMINO-4-[(3S)-3-FLUOROPYRROLIDIN-1-YL]-N,N-DIMETHYL-4-OXO-2-(TRANS-4-[1,2,4]TRIAZOLO[1,5-A]PYRIDIN-5-YLCYCLOH EXYL)BUTANAMIDE, 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Scapin, G.
登録日2007-08-01
公開日2007-11-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献4-Arylcyclohexylalanine analogs as potent, selective, and orally active inhibitors of dipeptidyl peptidase IV.
Bioorg.Med.Chem.Lett., 17, 2007
2QQF
DownloadVisualize
BU of 2qqf by Molmil
Hst2 bound to ADP-HPD and Acetylated histone H4
分子名称: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, Histone H4, NAD-dependent deacetylase HST2, ...
著者Marmorstein, R, Sanders, B.D, Zhao, K, Slama, J.
登録日2007-07-26
公開日2007-10-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes.
Mol.Cell, 25, 2007
2R2I
DownloadVisualize
BU of 2r2i by Molmil
Myristoylated Guanylate Cyclase Activating Protein-1 with Calcium Bound
分子名称: BETA-MERCAPTOETHANOL, CALCIUM ION, Guanylyl cyclase-activating protein 1, ...
著者Stephen, R.
登録日2007-08-25
公開日2007-12-11
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Stabilizing function for myristoyl group revealed by the crystal structure of a neuronal calcium sensor, guanylate cyclase-activating protein 1.
Structure, 15, 2007
2R1U
DownloadVisualize
BU of 2r1u by Molmil
DJ-1 activation by catechol quinone modification
分子名称: Protein DJ-1
著者Zhongtao, Z, Yue, F.
登録日2007-08-23
公開日2008-08-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献DJ-1 activation by catechol quinone modification
To be Published
2R2M
DownloadVisualize
BU of 2r2m by Molmil
2-(2-Chloro-6-Fluorophenyl)Acetamides as Potent Thrombin Inhibitors
分子名称: Hirudin-3A, N-[2-({[amino(imino)methyl]amino}oxy)ethyl]-2-{6-chloro-3-[(2,2-difluoro-2-phenylethyl)amino]-2-fluorophenyl}acetamide, Thrombin heavy chain, ...
著者Spurlino, J.
登録日2007-08-27
公開日2008-08-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献2-(2-Chloro-6-Fluorophenyl)Acetamides as Potent Thrombin Inhibitors
Bioorg.Med.Chem.Lett., 17, 2007
2R3G
DownloadVisualize
BU of 2r3g by Molmil
Crystal Structure of Cyclin-Dependent Kinase 2 with inhibitor
分子名称: 6-(2-fluorophenyl)-N-(pyridin-3-ylmethyl)imidazo[1,2-a]pyrazin-8-amine, Cell division protein kinase 2
著者Fischmann, T.O, Hruza, A.W, Madison, V.M, Duca, J.S.
登録日2007-08-29
公開日2008-01-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure-guided discovery of cyclin-dependent kinase inhibitors.
Biopolymers, 89, 2008
2QBM
DownloadVisualize
BU of 2qbm by Molmil
Crystal structure of the P450cam G248T mutant in the cyanide bound state
分子名称: CAMPHOR, CYANIDE ION, Cytochrome P450-cam, ...
著者von Koenig, K, Makris, T.M, Sligar, S.D, Schlichting, I.
登録日2007-06-18
公開日2007-12-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Alteration of P450 Distal Pocket Solvent Leads to Impaired Proton Delivery and Changes in Heme Geometry.
Biochemistry, 46, 2007
2QFS
DownloadVisualize
BU of 2qfs by Molmil
E.coli EPSP synthase Pro101Ser liganded with S3P
分子名称: 3-phosphoshikimate 1-carboxyvinyltransferase, FORMIC ACID, SHIKIMATE-3-PHOSPHATE
著者Schonbrunn, E, Healy-Fried, M.L.
登録日2007-06-28
公開日2007-10-02
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis of glyphosate tolerance resulting from mutations of Pro101 in Escherichia coli 5-enolpyruvylshikimate-3-phosphate synthase.
J.Biol.Chem., 282, 2007
2QIQ
DownloadVisualize
BU of 2qiq by Molmil
Structure-based Design and Synthesis and Biological Evaluation of Peptidomimetic SARS-3CLpro Inhibitors
分子名称: ETHYL (4R)-4-{[(2R,5S)-5-{[N-(TERT-BUTOXYCARBONYL)-L-SERYL]AMINO}-6-METHYL-2-(3-METHYLBUT-2-EN-1-YL)-4-OXOHEPTANOYL]AMINO}-5-[(3R)-2-OXOPYRROLIDIN-3-YL]PENTANOATE, Replicase polyprotein 1ab
著者Grum-Tokars, V.
登録日2007-07-05
公開日2008-02-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors.
Bioorg.Med.Chem.Lett., 17, 2007
2QKL
DownloadVisualize
BU of 2qkl by Molmil
The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex
分子名称: LEAD (II) ION, SPAC19A8.12 protein, SPBC3B9.21 protein
著者She, M, Chen, N, Song, H.
登録日2007-07-11
公開日2008-03-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structural basis of dcp2 recognition and activation by dcp1.
Mol.Cell, 29, 2008
2QKM
DownloadVisualize
BU of 2qkm by Molmil
The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, SPAC19A8.12 protein, SPBC3B9.21 protein
著者She, M, Song, H.
登録日2007-07-11
公開日2008-04-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of dcp2 recognition and activation by dcp1.
Mol.Cell, 29, 2008
7AAD
DownloadVisualize
BU of 7aad by Molmil
Crystal structure of the catalytic domain of human PARP1 in complex with olaparib
分子名称: 4-(3-{[4-(cyclopropylcarbonyl)piperazin-1-yl]carbonyl}-4-fluorobenzyl)phthalazin-1(2H)-one, Poly [ADP-ribose] polymerase 1, SULFATE ION
著者Schimpl, M, Ogden, T.E.H, Yang, J.-C, Easton, L.E, Underwood, E, Rawlins, P.B, Johannes, J.W, Embrey, K.J, Neuhaus, D.
登録日2020-09-04
公開日2021-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Dynamics of the HD regulatory subdomain of PARP-1; substrate access and allostery in PARP activation and inhibition.
Nucleic Acids Res., 49, 2021
6XMX
DownloadVisualize
BU of 6xmx by Molmil
Cryo-EM structure of BCL6 bound to BI-3802
分子名称: 2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide, B-cell lymphoma 6 protein
著者Yoon, H, Burman, S.S.R, Hunkeler, M, Nowak, R.P, Fischer, E.S.
登録日2020-07-01
公開日2020-11-25
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Small-molecule-induced polymerization triggers degradation of BCL6.
Nature, 588, 2020
2G6X
DownloadVisualize
BU of 2g6x by Molmil
Crystal structure of a novel green fluorescent protein from marine copepod Pontellina plumata
分子名称: green fluorescent protein 2
著者Evdokimov, A.G, Pokross, M.E, Chudakov, D.M.
登録日2006-02-26
公開日2006-03-28
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the fast maturation of Arthropoda green fluorescent protein.
Embo Rep., 7, 2006
6KJ4
DownloadVisualize
BU of 6kj4 by Molmil
120kV MicroED structure of FUS (37-42) SYSGYS solved from single crystal at 0.65 A
分子名称: RNA-binding protein FUS
著者Zhou, H, Luo, F, Luo, Z, Li, D, Liu, C, Li, X.
登録日2019-07-20
公開日2019-10-02
最終更新日2024-03-27
実験手法ELECTRON CRYSTALLOGRAPHY (0.65 Å)
主引用文献Programming Conventional Electron Microscopes for Solving Ultrahigh-Resolution Structures of Small and Macro-Molecules.
Anal.Chem., 91, 2019
6X6L
DownloadVisualize
BU of 6x6l by Molmil
Cryo-EM Structure of CagX and CagY within the dCag3 Helicobacter pylori PR
分子名称: Cag pathogenicity island protein (Cag7), Cag pathogenicity island protein (Cag8)
著者Sheedlo, M.J, Chung, J.M, Sawhney, N, Durie, C.L, Cover, T.L, Ohi, M.D, Lacy, D.B.
登録日2020-05-28
公開日2020-09-30
最終更新日2021-04-14
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Cryo-EM reveals species-specific components within the Helicobacter pylori Cag type IV secretion system core complex.
Elife, 9, 2020
6X64
DownloadVisualize
BU of 6x64 by Molmil
Legionella pneumophila Dot T4SS PR
分子名称: Type IV secretion system unknown protein fragment
著者Durie, C.L, Sheedlo, M.J, Chung, J.M, Byrne, B.G, Su, M, Knight, T, Swanson, M.S, Lacy, D.B, Ohi, M.D.
登録日2020-05-27
公開日2020-10-07
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex.
Elife, 9, 2020
2GEQ
DownloadVisualize
BU of 2geq by Molmil
Crystal Structure of a p53 Core Dimer Bound to DNA
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*GP*CP*GP*TP*GP*AP*GP*CP*AP*TP*GP*CP*TP*CP*AP*C)-3', Cellular tumor antigen p53, ...
著者Ho, W.C, Fitzgerald, M.X, Marmorstein, R.
登録日2006-03-20
公開日2006-05-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the p53 Core Domain Dimer Bound to DNA.
J.Biol.Chem., 281, 2006
7A8O
DownloadVisualize
BU of 7a8o by Molmil
rsGreen0.7-K206A-N205S in the green-on state
分子名称: 1,2-ETHANEDIOL, Green fluorescent protein
著者De Zitter, E, Dedecker, P, Van Meervelt, L.
登録日2020-08-30
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon