PDB: 37722 件ウェブページステータス検索Chemie searchBIRD

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3S1M	RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 1) 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*GP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-15 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.13 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
6BV7	NMR structure of Sodium/Calcium Exchanger 1 (NCX1) Two-helix Bundle (THB) domain 分子名称: Sodium/calcium exchanger 1 著者 Yuan, J, Yuan, C, Bruschweiler, R. 登録日 2017-12-12 公開日 2018-06-20 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 The Intracellular Loop of the Na+/Ca2+Exchanger Contains an "Awareness Ribbon"-Shaped Two-Helix Bundle Domain. Biochemistry, 57, 2018
8AUJ	OPR3 Y190F variant in complex with ethyl (Z)-2-(hydroxyimino)-3-oxobutanoate 分子名称: 1,2-ETHANEDIOL, 12-oxophytodienoate reductase 3, FLAVIN MONONUCLEOTIDE, ... 著者 Polidori, N, Gruber, K. 登録日 2022-08-25 公開日 2023-03-01 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Mechanistic Insights into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines. Acs Catalysis, 13, 2023
8AUL	OPR3 Y190F in complex with 2-methoxyethyl (Z)-2-(hydroxyimino)-3-oxobutanoate 分子名称: 12-oxophytodienoate reductase 3, 2-methoxyethyl (2~{Z})-2-hydroxyimino-3-oxidanylidene-butanoate, DI(HYDROXYETHYL)ETHER, ... 著者 Polidori, N, Gruber, K. 登録日 2022-08-25 公開日 2023-03-01 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Mechanistic Insights into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines. Acs Catalysis, 13, 2023
6N7F	1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD. 分子名称: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BICARBONATE ION, ... 著者 Minasov, G, Shuvalova, L, Shabalin, I.G, Grabowski, M, Olphie, A, Cardona-Correa, A, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2018-11-27 公開日 2018-12-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD. To Be Published
8EUI	Ytm1 associated nascent 60S ribosome (-fkbp39) State 3 分子名称: 60S ribosomal protein L10-A, 60S ribosomal protein L11-A, 60S ribosomal protein L13, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-18 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
7UBU	Crystal structure of ZMET2 in complex with hemimethylated CAG DNA and a histone H3Kc9me2 peptide 分子名称: 5MC SSDNA, C49 SSDNA, DNA (cytosine-5)-methyltransferase 1, ... 著者 Fang, J, Song, J. 登録日 2022-03-15 公開日 2022-06-08 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Mechanistic basis for maintenance of CHG DNA methylation in plants. Nat Commun, 13, 2022
8ETC	Fkbp39 associated nascent 60S ribosome State 4 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-16 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EUY	Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-19 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETH	Ytm1 associated 60S nascent ribosome State 1B 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-17 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
4AGW	Discovery of a small molecule type II inhibitor of wild-type and gatekeeper mutants of BCR-ABL, PDGFRalpha, Kit, and Src kinases 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-{2-[(cyclopropylcarbonyl)amino][1,3]thiazolo[5,4-b]pyridin-5-yl}-N-{4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromet hyl)phenyl}benzamide, GLYCEROL, ... 著者 Weisberg, E, Choi, H.G, Seeliger, M, Gray, N, Griffin, J.D. 登録日 2012-02-01 公開日 2012-02-15 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Discovery of a Small-Molecule Type II Inhibitor of Wild-Type and Gatekeeper Mutants of Bcr-Abl, Pdgfralpha, Kit, and Src Kinases: Novel Type II Inhibitor of Gatekeeper Mutants. Blood, 115, 2010
8AWN	Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant C106Q 分子名称: CHLORIDE ION, Cupin_2 domain-containing protein 著者 Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T. 登録日 2022-08-30 公開日 2023-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation Chem Ing Tech, 2023
1XWB	Drospohila thioredoxin, oxidized, P42212 分子名称: CADMIUM ION, thioredoxin 著者 Wahl, M.C, Irmler, A, Hecker, B, Schirmer, R.H, Becker, K. 登録日 2004-10-29 公開日 2004-11-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Comparative structural analysis of oxidized and reduced thioredoxin from Drosophila melanogaster J.Mol.Biol., 345, 2005
8ESR	Ytm1 associated nascent 60S ribosome (-fkbp39) State 2 分子名称: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-14 公開日 2022-11-30 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ATO	Structure of the giant inhibitor of apoptosis, BIRC6 bound to the regulator SMAC 分子名称: Baculoviral IAP repeat-containing protein 6, Diablo IAP-binding mitochondrial protein 著者 Dietz, L, Elliott, P.R. 登録日 2022-08-23 公開日 2023-03-08 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis for SMAC-mediated antagonism of caspase inhibition by the giant ubiquitin ligase BIRC6. Science, 379, 2023
8AWP	Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant 208 (V19I/R23H/M38I/I60F/C106Q) 分子名称: Cupin_2 domain-containing protein 著者 Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T. 登録日 2022-08-30 公開日 2023-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.595 Å) 主引用文献 Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation Chem Ing Tech, 2023
8ETI	Fkbp39 associated 60S nascent ribosome State 1 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-17 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8AFP	Structure of fibronectin 2 and 3 of L1CAM at 3.0 Angstrom 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neural cell adhesion molecule L1 著者 Guedez, G, Loew, C. 登録日 2022-07-18 公開日 2023-03-08 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 X-ray structure and function of fibronectin domains two and three of the neural cell adhesion molecule L1. Faseb J., 37, 2023
1XZ3	Complex of apoferritin with isoflurane 分子名称: 1-CHLORO-2,2,2-TRIFLUOROETHYL DIFLUOROMETHYL ETHER, CADMIUM ION, Ferritin light chain 著者 Liu, R, Loll, P.J, Eckenhoff, R.G. 登録日 2004-11-11 公開日 2005-05-10 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural basis for high-affinity volatile anesthetic binding in a natural 4-helix bundle protein. Faseb J., 19, 2005
2C9O	3D Structure of the human RuvB-like helicase RuvBL1 分子名称: ADENOSINE-5'-DIPHOSPHATE, RUVB-LIKE 1 著者 Matias, P.M, Gorynia, S, Donner, P, Carrondo, M.A. 登録日 2005-12-14 公開日 2006-10-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the human AAA+ protein RuvBL1. J. Biol. Chem., 281, 2006
8ETG	Fkbp39 associated 60S nascent ribosome State 3 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-17 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8B1C	DtpB-Nb132-ALA 分子名称: ALA-LEU-ALA, DECANE, DODECANE, ... 著者 Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C. 登録日 2022-09-09 公開日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition. Cell Rep, 42, 2023
8B1D	DtpB-Nb132-APF 分子名称: ALA-PRO-PHE, DECANE, DODECANE, ... 著者 Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C. 登録日 2022-09-09 公開日 2023-08-09 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition. Cell Rep, 42, 2023
5B6H	Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP. 分子名称: ADENOSINE MONOPHOSPHATE, Adenine phosphoribosyltransferase, CHLORIDE ION, ... 著者 Pavithra, G.C, Ramagopal, U.A. 登録日 2016-05-27 公開日 2017-05-31 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP. To be published
8B1F	DtpB-Nb132-AV 分子名称: ALA-VAL, DECANE, DODECANE, ... 著者 Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C. 登録日 2022-09-09 公開日 2023-08-09 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition. Cell Rep, 42, 2023

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