PDB: 537 件ウェブページステータス検索Chemie searchBIRD

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2XCA	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORM 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* CP*CP*CP*C)-3', ... 著者 Irimia, A, Egli, M. 登録日 2010-04-20 公開日 2010-09-08 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Metal Ion Dependence of the Active Site Conformation of the Trans-Lesion DNA Polymerase Dpo4 from Sulfolobus Solfataricus Acta Crystallogr.,Sect.F, 66, 2010
2DBE	CRYSTAL STRUCTURE OF A BERENIL-DODECANUCLEOTIDE COMPLEX: THE ROLE OF WATER IN SEQUENCE-SPECIFIC LIGAND BINDING 分子名称: BERENIL, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Brown, D.G, Sanderson, M.R, Skelly, J.V, Jenkins, T.C, Brown, T, Garman, E, Stuart, D.I, Neidle, S. 登録日 1990-03-19 公開日 1991-07-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a berenil-dodecanucleotide complex: the role of water in sequence-specific ligand binding. EMBO J., 9, 1990
1D90	REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH I.T MISMATCHED BASE PAIRS 分子名称: DNA (5'-D(*GP*GP*IP*GP*CP*TP*CP*C)-3') 著者 Cruse, W.B.T, Aymani, J, Kennard, O, Brown, T, Jack, A.G.C, Leonard, G.A. 登録日 1992-10-17 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Refined crystal structure of an octanucleotide duplex with I.T. mismatched base pairs. Nucleic Acids Res., 17, 1989
1D40	BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 分子名称: COPPER (II) CHLORIDE, COPPER (II) ION, DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3') 著者 Geierstanger, B.H, Kagawa, T.F, Chen, S.-L, Quigley, G.J, Ho, P.S. 登録日 1991-05-07 公開日 1992-04-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Base-specific binding of copper(II) to Z-DNA. The 1.3-A single crystal structure of d(m5CGUAm5CG) in the presence of CuCl2. J.Biol.Chem., 266, 1991
1D86	STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), NETROPSIN 著者 Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. 登録日 1992-08-24 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry, 31, 1992
1EDR	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM 分子名称: 5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, SPERMINE 著者 Chatake, T, Hikima, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2000-01-28 公開日 2000-02-16 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis. J.Mol.Biol., 294, 1999
2HBN	Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex 分子名称: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', THALLIUM (I) ION 著者 Gill, M.L, Strobel, S.A, Loria, J.P. 登録日 2006-06-14 公開日 2006-09-19 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystallization and characterization of the thallium form of the Oxytricha nova G-quadruplex. Nucleic Acids Res., 34, 2006
1FHZ	PSORALEN CROSS-LINKED D(CCGGTACCGG) FORMS HOLLIDAY JUNCTION 分子名称: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') 著者 Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S. 登録日 2000-08-02 公開日 2001-04-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions. J.Mol.Biol., 308, 2001
1FHY	PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION 分子名称: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, CALCIUM ION, DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3') 著者 Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S. 登録日 2000-08-02 公開日 2001-04-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions. J.Mol.Biol., 308, 2001
457D	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA 分子名称: DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Chatake, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 1999-03-06 公開日 2000-01-01 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis. J.Mol.Biol., 294, 1999
6B6H	The cryo-EM structure of a bacterial class I transcription activation complex 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Hong, C, Huang, R, Yu, Z, Steitz, T.A. 登録日 2017-10-02 公開日 2017-11-15 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of bacterial transcription activation. Science, 358, 2017
1L1H	Crystal Structure of the Quadruplex DNA-Drug Complex 分子名称: 3-PYRROLIDIN-1-YL-N-[6-(3-PYRROLIDIN-1-YL-PROPIONYLAMINO)-ACRIDIN-3-YL]-PROPIONAMIDE, 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION 著者 Haider, S.M, Parkinson, G.N, Neidle, S. 登録日 2002-02-16 公開日 2003-02-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure of a G-quadruplex-Ligand Complex J.Mol.Biol., 326, 2003
176D	NMR SOLUTION STRUCTURE OF A PEPTIDE NUCLEIC ACID COMPLEXED WITH RNA 分子名称: DNA (5'-D(*GPN*APN*APN*CPN*TPN*CPN)-3'), RNA (5'-R(P*GP*AP*GP*UP*UP*C)-3') 著者 Brown, S.C, Veal, J.M. 登録日 1994-05-17 公開日 1994-11-01 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 NMR solution structure of a peptide nucleic acid complexed with RNA. Science, 265, 1994
1BDN	CRYSTAL LATTICE PACKING IS IMPORTANT IN DETERMINING THE BEND OF A DNA DODECAMER CONTAINING AN ADENINE TRACT 分子名称: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*TP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION 著者 DiGabriele, A.D, Sanderson, M.R, Steitz, T.A. 登録日 1989-07-25 公開日 1991-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract. Proc.Natl.Acad.Sci.USA, 86, 1989
1D85	STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX 分子名称: DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3'), NETROPSIN 著者 Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. 登録日 1992-08-24 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry, 31, 1992
5ITR	Crystal Structure of Human NEIL1(P2G) bound to duplex DNA containing THF 分子名称: DNA (26-MER), Endonuclease 8-like 1 著者 Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C. 登録日 2016-03-17 公開日 2016-07-06 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair Proc.Natl.Acad.Sci.USA, 113, 2016
1H7W	Dihydropyrimidine dehydrogenase (DPD) from pig 分子名称: DIHYDROPYRIMIDINE DEHYDROGENASE, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Dobritzsch, D, Schneider, G, Schnackerz, K.D, Lindqvist, Y. 登録日 2001-01-19 公開日 2001-02-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of dihydropyrimidine dehydrogenase, a major determinant of the pharmacokinetics of the anti-cancer drug 5-fluorouracil. EMBO J., 20, 2001
1H7X	Dihydropyrimidine dehydrogenase (DPD) from pig, ternary complex of a mutant enzyme (C671A), NADPH and 5-fluorouracil 分子名称: 5-FLUOROURACIL, DIHYDROPYRIMIDINE DEHYDROGENASE, FLAVIN MONONUCLEOTIDE, ... 著者 Dobritzsch, D, Schneider, G, Schnackerz, K.D, Lindqvist, Y. 登録日 2001-01-19 公開日 2001-02-23 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Crystal Structure of Dihydropyrimidine Dehydrogenase, a Major Determinant of the Pharmacokinetics of the Anti-Cancer Drug 5-Fluorouracil Embo J., 20, 2001
1N1O	Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNA 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Wilds, C.J, Wawrzak, Z, Krishnamurthy, R, Eschenmoser, A, Egli, M. 登録日 2002-10-18 公開日 2002-11-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Crystal Structure of a B-Form DNA Duplex Containing (L)-alpha-Threofuranosyl (3'-->2') Nucleosides: A Four-Carbon Sugar Is Easily Accommodated into the Backbone of DNA J.Am.Chem.Soc., 124, 2002
1PDT	PD235, PNA-DNA DUPLEX, NMR, 8 STRUCTURES 分子名称: DNA (5'-D(*GP*AP*CP*AP*TP*AP*GP*C)-3', PEPTIDE NUCLEIC ACID (COOH-P(*G*C*T*A*T*G*T*C)-NH2) 著者 Eriksson, M, Nielsen, P.E. 登録日 1996-03-28 公開日 1996-10-14 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of a peptide nucleic acid-DNA duplex. Nat.Struct.Biol., 3, 1996
1PUP	CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION 分子名称: PNA (H-P(*CPN*GPN*TPN*APN*CPN*GPN)-NH2) 著者 Rasmussen, H, Kastrup, J.S. 登録日 1996-11-01 公開日 1997-02-25 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of a peptide nucleic acid (PNA) duplex at 1.7 A resolution. Nat.Struct.Biol., 4, 1997
4X1E	Crystal structure of unliganded E. coli transcriptional regulator RutR, W167A mutant 分子名称: HTH-type transcriptional regulator RutR 著者 Nguyen Le Minh, P, de Cima, S, Bervoets, I, Maes, D, Rubio, V, Charlier, D. 登録日 2014-11-24 公開日 2015-01-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Ligand binding specificity of RutR, a member of the TetR family of transcription regulators in Escherichia coli. Febs Open Bio, 5, 2015
6N89	Cryo-EM structure of the Importin beta:Histone H1.0 complex 分子名称: Histone H1.0, Importin subunit beta-1 著者 Bilokapic, S, Ivic, N, Halic, M. 登録日 2018-11-28 公開日 2019-02-27 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 Fuzzy Interactions Form and Shape the Histone Transport Complex. Mol. Cell, 73, 2019
7DO1	Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression 分子名称: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*TP*AP*GP*GP*G)-3') 著者 Fu, W.Q, Jing, H.T, Zhang, N. 登録日 2020-12-11 公開日 2021-09-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T. Nucleic Acids Res., 49, 2021
7ON0	Thermus sp. 2.9 DarT in complex with ADP-ribosylated ssDNA 分子名称: DNA (5'-D(*AP*TP*GP*TP*C)-3'), DarT domain-containing protein, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE 著者 Schuller, M, Ariza, A. 登録日 2021-05-24 公開日 2021-06-23 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 Molecular basis for DarT ADP-ribosylation of a DNA base. Nature, 596, 2021

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