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9AT1
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Crystal structure of SARS-CoV-2 3CL protease in complex with a methylcyclohexyl 2-pyrrolidone inhibitor (R-enantiomer)
分子名称: (1S,2S)-2-{[N-({[(2R)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5, TETRAETHYLENE GLYCOL
著者Lovell, S, Cooper, A, Battaile, K.P, Dampalla, C.S, Groutas, W.C.
登録日2024-02-26
公開日2024-07-10
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure-Guided Design of Potent Coronavirus Inhibitors with a 2-Pyrrolidone Scaffold: Biochemical, Crystallographic, and Virological Studies.
J.Med.Chem., 67, 2024
8VX9
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BU of 8vx9 by Molmil
Structure of HamAB apo complex from the Escherichia coli Hachiman defense system
分子名称: HamA, HamB
著者Tuck, O.T, Doudna, J.A.
登録日2024-02-03
公開日2024-03-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Hachiman is a genome integrity sensor.
Biorxiv, 2024
8VA1
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BU of 8va1 by Molmil
S. aureus TarL H300N in complex with CDP-ribitol (single tetramer)
分子名称: CDP-ribitol, Teichoic acid ribitol-phosphate polymerase TarL
著者Li, F.K.K, Worrall, L.J, Strynadka, N.C.J.
登録日2023-12-10
公開日2024-04-03
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM analysis of S. aureus TarL, a polymerase in wall teichoic acid biogenesis central to virulence and antibiotic resistance.
Sci Adv, 10, 2024
9EOE
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BU of 9eoe by Molmil
TF type tau filament from V337M mutant
分子名称: Isoform Tau-F of Microtubule-associated protein tau
著者Qi, C, Scheres, S.H.W, Michel, G.
登録日2024-03-14
公開日2024-07-10
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Tau filaments with the Alzheimer fold in cases with MAPT mutations V337M and R406W.
Biorxiv, 2024
9EZ8
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BU of 9ez8 by Molmil
Cryo-EM structure of the icosahedral lumazine synthase from Vicia faba.
分子名称: 6,7-dimethyl-8-ribityllumazine synthase
著者Chee, M, Trapani, S, Hoh, F, Lai Kee Him, J, Yvon, M, Blanc, S, Bron, P.
登録日2024-04-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Cryo-EM structure of the icosahedral lumazine synthase from Vicia faba.
To Be Published
8WKR
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BU of 8wkr by Molmil
Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the open form
分子名称: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE
著者Oda, K, Matoba, Y.
登録日2023-09-28
公開日2024-02-14
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
9EM6
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BU of 9em6 by Molmil
OPR3 variant Y364P in its dimeric form obtained without ammonium sulfate
分子名称: 12-oxophytodienoate reductase 3, FLAVIN MONONUCLEOTIDE
著者Bijelic, A, Macheroux, P, Kerschbaumer, B.
登録日2024-03-07
公開日2024-08-14
最終更新日2024-08-21
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Analysis of homodimer formation in 12-oxophytodienoate reductase 3 in solutio and crystallo challenges the physiological role of the dimer.
Sci Rep, 14, 2024
9EPM
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BU of 9epm by Molmil
Mpro from SARS-CoV-2 with 4A mutation
分子名称: Non-structural protein 11
著者Plewka, J, Lis, K, Czarna, A, Pyrc, K, Kantyka, T, Chykunova, Y.
登録日2024-03-19
公開日2024-04-17
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (1.981 Å)
主引用文献SARS-CoV-2 M pro oligomerization as a potential target for therapy.
Int.J.Biol.Macromol., 267, 2024
9EU8
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The FK1 domain of FKBP51 in complex with SAFit-analog 15h
分子名称: (4-methyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
著者Meyners, C, Buffa, V, Hausch, F.
登録日2024-03-27
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献1,4-Pyrazolyl-containing SAFit-analogues are selective FKBP51 inhibitors with improved ligand efficiency and drug-like profile.
Chemmedchem, 2024
9EM5
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BU of 9em5 by Molmil
OPR3 variant Y364P in its monomeric form
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 12-oxophytodienoate reductase 3, CHLORIDE ION, ...
著者Bijelic, A, Macheroux, P, Kerschbaumer, B.
登録日2024-03-07
公開日2024-08-14
最終更新日2024-08-21
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Analysis of homodimer formation in 12-oxophytodienoate reductase 3 in solutio and crystallo challenges the physiological role of the dimer.
Sci Rep, 14, 2024
8XCV
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BU of 8xcv by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction
分子名称: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Oide, M, Nakasako, M.
登録日2023-12-10
公開日2023-12-27
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.83 Å)
主引用文献CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
9ATF
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BU of 9atf by Molmil
Crystal structure of MERS 3CL protease in complex with a 1-methyl-4,4-difluorocyclohexyl 2-pyrrolidone inhibitor
分子名称: (1R,2S)-2-({N-[({(2S)-1-[(4,4-difluorocyclohexyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-({N-[({(2S)-1-[(4,4-difluorocyclohexyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5
著者Liu, L, Lovell, S, Battaile, K.P, Dampalla, C.S, Groutas, W.C.
登録日2024-02-26
公開日2024-07-10
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-Guided Design of Potent Coronavirus Inhibitors with a 2-Pyrrolidone Scaffold: Biochemical, Crystallographic, and Virological Studies.
J.Med.Chem., 67, 2024
8YJF
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BU of 8yjf by Molmil
Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and an H2A-H2B dimer
分子名称: DNA replication licensing factor MCM2, FACT complex subunit SPT16, Histone H2A type 1-D, ...
著者Gan, S.L, Yang, W.S, Xu, R.M.
登録日2024-03-01
公開日2024-03-20
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (4.4 Å)
主引用文献Structure of a histone hexamer bound by the chaperone domains of SPT16 and MCM2.
Sci China Life Sci, 67, 2024
9AZI
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BU of 9azi by Molmil
NMR solution structure of cell-permeant miniature protein ZF5.3
分子名称: Designed Zinc finger protein 5.3, ZINC ION
著者Giudice, J.A, Kelly, M, Schepartz, A.
登録日2024-03-11
公開日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural and mechanistic basis for efficient endosomal escape by designed mini-proteins
To be published
9C4D
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BU of 9c4d by Molmil
The structure of 4 MntR homodimers bound to the promoter sequence of mnep
分子名称: DNA (77-MER), HTH-type transcriptional regulator MntR, MANGANESE (II) ION
著者Shi, H, Fu, Y, Glasfeld, A, Ahuja, S.
登録日2024-06-04
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (4.17 Å)
主引用文献The structure of 4 MntR homodimers bound to the promoter sequence of mnep.
To Be Published
8YA5
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BU of 8ya5 by Molmil
Mpro from SARS-CoV-2
分子名称: 3C-like proteinase
著者Zhang, C.Y, Xu, Q, Wang, W.W, Zhou, H, Wang, Q.S.
登録日2024-02-07
公開日2024-02-28
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Crystallographic data collection using a multilayer monochromator on an undulator beamline at SSRF
To Be Published
9G2U
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BU of 9g2u by Molmil
Endophilin B1 dimer bound to nanodisc center
分子名称: Endophilin-B1
著者Thorlacius, A, Sundborger-Lunna, A.
登録日2024-07-11
公開日2024-08-07
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Endophilin B1 dimers bound to nanodiscs
To Be Published
8XCW
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BU of 8xcw by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction
分子名称: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Oide, M, Nakasako, M.
登録日2023-12-10
公開日2023-12-27
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.87 Å)
主引用文献CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8WO3
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BU of 8wo3 by Molmil
Crystal structure of H. pylori isoleucyl-tRNA synthetase (HpIleRS) in complex with Mupirocin
分子名称: ACETATE ION, GLYCEROL, Isoleucine--tRNA ligase, ...
著者Guo, Y, Li, S, Zhang, T.
登録日2023-10-06
公開日2024-02-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for substrate and antibiotic recognition by Helicobacter pylori isoleucyl-tRNA synthetase.
Febs Lett., 598, 2024
9C49
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BU of 9c49 by Molmil
Cryo-EM structure of Danio rerio voltage-sensing phosphatase (VSP) phosphatase domain
分子名称: Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase TPTE2
著者Zhang, L, Brohawn, S.G.
登録日2024-06-03
公開日2024-07-10
最終更新日2024-08-14
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Coupling sensor to enzyme in the voltage sensing phosphatase.
Nat Commun, 15, 2024
9BRS
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BU of 9brs by Molmil
Intact V-ATPase State 2 in synaptophysin knock-out isolated synaptic vesicles
分子名称: Renin receptor cytoplasmic fragment, Ribonuclease kappa, V-type proton ATPase 116 kDa subunit a 1, ...
著者Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T.
登録日2024-05-11
公開日2024-06-19
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Structure and topography of the synaptic V-ATPase-synaptophysin complex.
Nature, 631, 2024
9CA2
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BU of 9ca2 by Molmil
ENGINEERING THE HYDROPHOBIC POCKET OF CARBONIC ANHYDRASE II
分子名称: CARBONIC ANHYDRASE II, MERCURY (II) ION, ZINC ION
著者Alexander, R.S, Christianson, D.W.
登録日1991-07-09
公開日1992-07-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Engineering the hydrophobic pocket of carbonic anhydrase II.
Biochemistry, 30, 1991
8W4V
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BU of 8w4v by Molmil
Crystal structure of human HSP90 in complex with compound 4
分子名称: 4-[2-[(dimethylamino)methyl]phenyl]sulfanylbenzene-1,3-diol, Heat shock protein HSP 90-alpha, MAGNESIUM ION
著者Xu, C, Zhang, X.L, Bai, F.
登録日2023-08-25
公開日2024-04-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Accurate Characterization of Binding Kinetics and Allosteric Mechanisms for the HSP90 Chaperone Inhibitors Using AI-Augmented Integrative Biophysical Studies.
Jacs Au, 4, 2024
8XBD
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BU of 8xbd by Molmil
GH18 family chitinase from cold seep metagenome
分子名称: GH18 chitinase-like superfamily protein
著者Yang, J.
登録日2023-12-06
公開日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献GH18 family chitinase from cold seep metagenome
To Be Published
8XCJ
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BU of 8xcj by Molmil
Open State of central tail fiber of bacteriophage lambda upon binding to LamB (gpJ713-LamB complex)
分子名称: Maltoporin, Tip attachment protein J
著者Ge, X.F, Wang, J.W.
登録日2023-12-09
公開日2024-05-01
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献Structural mechanism of bacteriophage lambda tail's interaction with the bacterial receptor.
Nat Commun, 15, 2024

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件を2024-08-21に公開中

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