PDB: 2243 件ウェブページステータス検索Chemie searchBIRD

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7U1V	Structure of SPAC806.04c protein from fission yeast covalently bound to BeF3 分子名称: Damage-control phosphatase SPAC806.04c, NICKEL (II) ION, PHOSPHATE ION, ... 著者 Jacewicz, A, Sanchez, A.M, Shuman, S. 登録日 2022-02-22 公開日 2022-06-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Fission yeast Duf89 and Duf8901 are cobalt/nickel-dependent phosphatase-pyrophosphatases that act via a covalent aspartyl-phosphate intermediate. J.Biol.Chem., 298, 2022
7U1X	Structure of SPAC806.04c protein from fission yeast covalently bound to BeF3 分子名称: Damage-control phosphatase SPAC806.04c, PHOSPHATE ION, ZINC ION 著者 Jacewicz, A, Sanchez, A.M, Shuman, S. 登録日 2022-02-22 公開日 2022-06-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Fission yeast Duf89 and Duf8901 are cobalt/nickel-dependent phosphatase-pyrophosphatases that act via a covalent aspartyl-phosphate intermediate. J.Biol.Chem., 298, 2022
1P9Y	Ribosome binding of E. coli Trigger Factor mutant F44L. 分子名称: ACETIC ACID, Trigger factor 著者 Kristensen, O, Gajhede, M. 登録日 2003-05-13 公開日 2003-12-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Chaperone binding at the ribosomal exit tunnel. Structure, 11, 2003
1OMS	Structure determination by MAD: E.coli Trigger Factor binding at the ribosomal exit tunnel. 分子名称: GLYCEROL, SULFATE ION, SULFUR DIOXIDE, ... 著者 Kristensen, O, Gajhede, M. 登録日 2003-02-26 公開日 2003-12-16 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Chaperone binding at the ribosomal exit tunnel. Structure, 11, 2003
1N2M	The S53A Proenzyme Structure of Methanococcus jannaschii. 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Pyruvoyl-dependent arginine decarboxylase 著者 Tolbert, W.D, Graham, D.E, White, R.H, Ealick, S.E. 登録日 2002-10-23 公開日 2003-03-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms Structure, 11, 2003
7TZJ	SARS CoV-2 PLpro in complex with inhibitor 3k 分子名称: DIMETHYL SULFOXIDE, N-[(3-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide, Papain-like protease, ... 著者 Calleja, D.J, Klemm, T, Lechtenberg, B.C, Kuchel, N.W, Lessene, G, Komander, D. 登録日 2022-02-15 公開日 2022-03-02 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Insights Into Drug Repurposing, as Well as Specificity and Compound Properties of Piperidine-Based SARS-CoV-2 PLpro Inhibitors. Front Chem, 10, 2022
1PXA	CRYSTAL STRUCTURES OF MUTANT PSEUDOMONAS AERUGINOSA P-HYDROXYBENZOATE HYDROXYLASE: THE TYR201PHE, TYR385PHE, AND ASN300ASP VARIANTS 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, P-HYDROXYBENZOATE HYDROXYLASE, P-HYDROXYBENZOIC ACID 著者 Lah, M.S, Palfey, B.A, Schreuder, H.A, Ludwig, M.L. 登録日 1994-09-27 公開日 1995-02-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of mutant Pseudomonas aeruginosa p-hydroxybenzoate hydroxylases: the Tyr201Phe, Tyr385Phe, and Asn300Asp variants. Biochemistry, 33, 1994
1Q3M	1H NMR structure bundle of bovine Ca2+-osteocalcin 分子名称: Osteocalcin 著者 Dowd, T.L, Rosen, J.F, Li, L, Gundberg, C.M. 登録日 2003-07-30 公開日 2003-09-16 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 The Three-Dimensional Structure of Bovine Calcium Ion-Bound Osteocalcin Using 1H NMR Spectroscopy Biochemistry, 42, 2003
1PXB	CRYSTAL STRUCTURES OF MUTANT PSEUDOMONAS AERUGINOSA P-HYDROXYBENZOATE HYDROXYLASE: THE TYR201PHE, TYR385PHE, AND ASN300ASP VARIANTS 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, P-HYDROXYBENZOATE HYDROXYLASE, P-HYDROXYBENZOIC ACID 著者 Lah, M.S, Palfey, B.A, Schreuder, H.A, Ludwig, M.L. 登録日 1994-09-27 公開日 1995-02-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of mutant Pseudomonas aeruginosa p-hydroxybenzoate hydroxylases: the Tyr201Phe, Tyr385Phe, and Asn300Asp variants. Biochemistry, 33, 1994
1QUZ	Solution structure of the potassium channel scorpion toxin HSTX1 分子名称: HSTX1 TOXIN 著者 Savarin, P, Romi-Lebrun, R, Zinn-Justin, S, Lebrun, B, Nakajima, T, Gilquin, B, Menez, A. 登録日 1999-07-05 公開日 2000-07-07 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Structural and functional consequences of the presence of a fourth disulfide bridge in the scorpion short toxins: solution structure of the potassium channel inhibitor HsTX1. Protein Sci., 8, 1999
1QV1	Atomic resolution structure of obelin from Obelia longissima 分子名称: C2-HYDROPEROXY-COELENTERAZINE, CALCIUM ION, COBALT (II) ION, ... 著者 Liu, Z.J, Vysotski, E.S, Deng, L, Lee, J, Rose, J, Wang, B.C. 登録日 2003-08-26 公開日 2003-11-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Atomic resolution structure of obelin: soaking with calcium enhances electron density of the second oxygen atom substituted at the C2-position of coelenterazine. Biochem.Biophys.Res.Commun., 311, 2003
1OQR	Crystal structure of C73S mutant of putidaredoxin, a [2Fe-2S] ferredoxin from Pseudomonas putida, at 1.65A resolution 分子名称: FE2/S2 (INORGANIC) CLUSTER, Putidaredoxin 著者 Sevrioukova, I.F, Garcia, C, Li, H, Bhaskar, B, Poulos, T.L. 登録日 2003-03-10 公開日 2003-11-04 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of putidaredoxin, the [2Fe-2S] component of the P450cam monooxygenase system from Pseudomonas putida J.MOL.BIOL., 333, 2003
1PXC	CRYSTAL STRUCTURES OF MUTANT PSEUDOMONAS AERUGINOSA P-HYDROXYBENZOATE HYDROXYLASE: THE TYR201PHE, TYR385PHE, AND ASN300ASP VARIANTS 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, P-HYDROXYBENZOATE HYDROXYLASE, P-HYDROXYBENZOIC ACID 著者 Lah, M.S, Palfey, B.A, Schreuder, H.A, Ludwig, M.L. 登録日 1994-09-27 公開日 1995-02-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structures of mutant Pseudomonas aeruginosa p-hydroxybenzoate hydroxylases: the Tyr201Phe, Tyr385Phe, and Asn300Asp variants. Biochemistry, 33, 1994
1QV0	Atomic resolution structure of obelin from Obelia longissima 分子名称: C2-HYDROPEROXY-COELENTERAZINE, COBALT (II) ION, GLYCEROL, ... 著者 Liu, Z.J, Vysotski, E.S, Deng, L, Lee, J, Rose, J, Wang, B.C. 登録日 2003-08-26 公開日 2003-11-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Atomic resolution structure of obelin: soaking with calcium enhances electron density of the second oxygen atom substituted at the C2-position of coelenterazine. Biochem.Biophys.Res.Commun., 311, 2003
7CZ4	Structure of SARS-CoV-2 macro domain in complex with ADP-ribose 分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, Non-structural protein 3 著者 Lin, M.H, Hsu, C.H. 登録日 2020-09-07 公開日 2020-11-11 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Structural, Biophysical, and Biochemical Elucidation of the SARS-CoV-2 Nonstructural Protein 3 Macro Domain. Acs Infect Dis., 6, 2020
5PAX	Crystal Structure of Factor VIIa in complex with 1-(2,6-difluorophenyl)-3-[[3-[5-hydroxy-4-(1H-pyrrolo[3,2-c]pyridin-2-yl)pyrazol-1-yl]phenyl]methyl]urea 分子名称: 1-(2,6-difluorophenyl)-3-[[3-[5-hydroxy-4-(1H-pyrrolo[3,2-c]pyridin-2-yl)pyrazol-1-yl]phenyl]methyl]urea, CALCIUM ION, CHLORIDE ION, ... 著者 Stihle, M, Mayweg, A, Roever, S, Rudolph, M.G. 登録日 2016-11-10 公開日 2017-06-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.36 Å) 主引用文献 Crystal Structure of a Factor VIIa complex To be published
5OXS	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid 著者 Shrive, A.K, Greenhough, T.J. 登録日 2017-09-07 公開日 2018-06-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
5OXR	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide 分子名称: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D 著者 Shrive, A.K, Greenhough, T.J. 登録日 2017-09-07 公開日 2018-06-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
5PB2	Crystal Structure of Factor VIIa in complex with 2-phenyl-4-(1H-pyrrolo[3,2-c]pyridin-2-yl)pyrazol-3-ol 分子名称: 1-phenyl-4-(1H-pyrrolo[3,2-c]pyridin-2-yl)-1H-pyrazol-5-ol, CALCIUM ION, CHLORIDE ION, ... 著者 Stihle, M, Mayweg, A, Roever, S, Rudolph, M.G. 登録日 2016-11-16 公開日 2017-06-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystal Structure of a Factor VIIa complex To be published
7JXA	CRYSTAL STRUCTURE OF NATIVE BOVINE ARRESTIN 1 IN COMPLEX WITH INOSITOL 1,4,5-TRIPHOSPHATE 分子名称: 2-ETHOXYETHANOL, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, S-arrestin, ... 著者 Sander, C.L, Palczewski, K, Kiser, P.D. 登録日 2020-08-26 公開日 2021-10-13 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural evidence for visual arrestin priming via complexation of phosphoinositols. Structure, 30, 2022
7JO9	1:1 cGAS-nucleosome complex 分子名称: Cyclic GMP-AMP synthase, DNA (145-MER), Histone H2A type 1, ... 著者 Boyer, J.A, Spangler, C.J, Strauss, J.D, Cesmat, A.P, Liu, P, McGinty, R.K, Zhang, Q. 登録日 2020-08-06 公開日 2020-09-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis of nucleosome-dependent cGAS inhibition. Science, 370, 2020
7JOA	2:1 cGAS-nucleosome complex 分子名称: Cyclic GMP-AMP synthase, DNA (145-MER), Histone H2A type 1, ... 著者 Boyer, J.A, Spangler, C.J, Strauss, J.D, Cesmat, A.P, Liu, P, McGinty, R.K, Zhang, Q. 登録日 2020-08-06 公開日 2020-09-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis of nucleosome-dependent cGAS inhibition. Science, 370, 2020
7LM3	Crystal Structure of Thr316Ala mutant of JAMM domain of S. pombe 分子名称: AMSH-like protease sst2, PHOSPHATE ION, ZINC ION 著者 Shrestha, R, Das, C. 登録日 2021-02-05 公開日 2021-06-30 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of the Thr316Ala mutant of a yeast JAMM deubiquitinase: implication of active-site loop dynamics in catalysis. Acta Crystallogr.,Sect.F, 77, 2021
7KXS	Computational design of constitutively active cGAS 分子名称: Cyclic GMP-AMP synthase, ZINC ION 著者 Dowling, Q, Volkman, H.E, Gray, E.E, Ovchinnikov, S, Cambier, S, Bera, A.K, Bick, M, Kang, A, Stetson, D.B, King, N.P. 登録日 2020-12-04 公開日 2021-12-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Computational design of constitutively active cGAS. Nat.Struct.Mol.Biol., 30, 2023
5T4S	Novel Approach of Fragment-Based Lead Discovery applied to Renin Inhibitors 分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-chloro-N-[(furan-2-yl)methyl]pyrazin-2-amine, ... 著者 Snell, G.P, Behnke, C.A, Okada, K, Oki, H, Sang, B.C, Lane, W. 登録日 2016-08-30 公開日 2016-10-26 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Novel approach of fragment-based lead discovery applied to renin inhibitors. Bioorg.Med.Chem., 24, 2016

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