PDB: 47065 件ウェブページステータス検索Chemie searchBIRD

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5SL7	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1186029914 分子名称: (3R)-1-(2-fluorophenyl)-3-(methylamino)pyrrolidin-2-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.841 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SLI	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1003146540 分子名称: 2-(difluoromethoxy)benzene-1-sulfonamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SLO	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z56983806 分子名称: 1-methyl-N-(3-methylphenyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.829 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SLR	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2073741691 分子名称: 2-(difluoromethoxy)-1-[(2R,6S)-2,6-dimethylmorpholin-4-yl]ethan-1-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SM3	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z943693514 分子名称: PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.198 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SM6	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1899842917 分子名称: 3-[(3,5-dimethyl-1,2-oxazol-4-yl)methyl]-5-methyl-1,3,4-thiadiazol-2(3H)-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SMI	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z71580604 分子名称: (2S)-N-(5-methylpyridin-2-yl)oxolane-2-carboxamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SMK	PanDDA analysis group deposition of ground-state model of SARS-CoV-2 NSP14 分子名称: PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-08 公開日 2022-03-23 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 PanDDA analysis group deposition of ground-state model To Be Published
5SCA	Structure of liver pyruvate kinase in complex with anthraquinone derivative 36 分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, N-[(3R)-1-(3,4-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-sulfonyl)piperidine-3-carbonyl]-L-aspartic acid, ... 著者 Lulla, A, Foller, A, Nain-Perez, A, Grotli, M, Brear, P, Hyvonen, M. 登録日 2021-12-01 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.918 Å) 主引用文献 Anthraquinone derivatives as ADP-competitive inhibitors of liver pyruvate kinase. Eur.J.Med.Chem., 234, 2022
5SL8	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434762 分子名称: N,N-dimethylpyridin-4-amine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SLN	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z57299529 分子名称: PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.208 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SM2	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z3006151474 分子名称: (5S)-5-(difluoromethoxy)pyridin-2(5H)-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.781 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5SMH	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434938 分子名称: 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethyl-methanamine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ... 著者 Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A. 登録日 2022-03-03 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 PanDDA analysis group deposition To Be Published
8Y88	Structure of HCoV-HKU1C spike in the functionally anchored-2up conformation with 2TMPRSS2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Lu, Y.C, Zhang, X, Wang, H.F, Liu, X.C, Sun, L, Yang, H.T. 登録日 2024-02-06 公開日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 TMPRSS2 and glycan receptors synergistically facilitate coronavirus entry. Cell, 2024
9ICE	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CUCL2 (0.1 MILLIMOLAR) 分子名称: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... 著者 Pelletier, H, Sawaya, M.R. 登録日 1995-12-15 公開日 1996-11-15 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
9ICA	DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND MNCL2 分子名称: 2'-DEOXYADENOSINE 5'-O-(1-THIOTRIPHOSPHATE), DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), ... 著者 Pelletier, H, Sawaya, M.R. 登録日 1995-12-15 公開日 1995-12-15 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
9BA4	Full-length cross-linked Contactin 2 (CNTN2) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Contactin-2 著者 Liu, J.L, Fan, S.F, Ren, G.R, Rudenko, G.R. 登録日 2024-04-03 公開日 2024-07-17 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.54 Å) 主引用文献 Molecular mechanism of contactin 2 homophilic interaction. Structure, 2024
9F8X	Low-dose structure of Marinobacter nauticus nitrous oxide reductase 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... 著者 Einsle, O, Pomowski, A. 登録日 2024-05-07 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.498 Å) 主引用文献 Revisiting the metal sites of nitrous oxide reductase in a low-dose structure from Marinobacter nauticus. J.Biol.Inorg.Chem., 29, 2024
8Y2H	GK tetramer of AtP5CS1 filament with adjacent hooks, reaction state 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Delta-1-pyrroline-5-carboxylate synthase A 著者 Zhang, T, Guo, C.J, Liu, J.L. 登録日 2024-01-26 公開日 2024-06-05 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Dynamic Arabidopsis P5CS filament facilitates substrate channelling. Nat.Plants, 10, 2024
9ICR	DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), ... 著者 Pelletier, H, Sawaya, M.R. 登録日 1996-01-04 公開日 1996-01-04 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta Biochemistry, 35, 1996
9ICJ	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA 分子名称: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... 著者 Pelletier, H, Sawaya, M.R. 登録日 1995-12-15 公開日 1996-11-15 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis Biochemistry, 35, 1996
9FZK	SARS CoV-2 nsp10 in complex with theExoN domain from nsp14 分子名称: Guanine-N7 methyltransferase nsp14, Non-structural protein 11, ZINC ION 著者 Fisher, S.Z. 登録日 2024-07-05 公開日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 SARS CoV-2 nsp10 in complex with theExoN domain from nsp14 To Be Published
8ZND	Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and a substrate in the steady stage of reaction 分子名称: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 著者 Wakabayashi, T, Nakasako, M. 登録日 2024-05-26 公開日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.53 Å) 主引用文献 Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action To Be Published
8Y7X	Structure of HCoV-HKU1A spike in the functionally anchored-3up conformation with 3TMPRSS2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Lu, Y.C, Zhang, X, Wang, H.F, Liu, X.C, Sun, L, Yang, H.T. 登録日 2024-02-05 公開日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 TMPRSS2 and glycan receptors synergistically facilitate coronavirus entry. Cell, 2024
8Y16	Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein in complex with human ACE2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... 著者 Li, L.J, Gu, Y.H, Qi, J.X, Gao, G.F. 登録日 2024-01-23 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants. Structure, 2024

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