Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4HIF
DownloadVisualize
BU of 4hif by Molmil
Ultrahigh-resolution crystal structure of Z-DNA in complex with Zn2+ ions
分子名称: CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE (FULLY PROTONATED FORM), ...
著者Drozdzal, P, Gilski, M, Kierzek, R, Lomozik, L, Jaskolski, M.
登録日2012-10-11
公開日2013-06-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (0.85 Å)
主引用文献Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.
Acta Crystallogr.,Sect.D, 69, 2013
6AGF
DownloadVisualize
BU of 6agf by Molmil
Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta1
分子名称: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Pan, X.J, li, Z.Q, Zhou, Q, Shen, H.Z, Wu, K, Huang, X.S, Chen, J.F, Zhang, J.R, Zhu, X.C, Lei, J.L, Xiong, W, Gong, H.P, Xiao, B.L, Yan, N.
登録日2018-08-11
公開日2018-10-10
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta 1.
Science, 362, 2018
2FK6
DownloadVisualize
BU of 2fk6 by Molmil
Crystal Structure of RNAse Z/tRNA(Thr) complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, RIBONUCLEASE Z, ...
著者Li de la Sierra-Gallay, I, Mathy, N, Pellegrini, O, Condon, C.
登録日2006-01-04
公開日2006-03-21
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA.
Nat.Struct.Mol.Biol., 13, 2006
2E7Y
DownloadVisualize
BU of 2e7y by Molmil
High resolution structure of T. maritima tRNase Z
分子名称: S-1,2-PROPANEDIOL, SULFATE ION, ZINC ION, ...
著者Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-01-15
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
Acta Crystallogr.,Sect.F, 63, 2007
3CIR
DownloadVisualize
BU of 3cir by Molmil
E. coli Quinol fumarate reductase FrdA T234A mutation
分子名称: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Tomasiak, T.M, Maklashina, E, Cecchini, G, Iverson, T.M.
登録日2008-03-11
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
J.Biol.Chem., 283, 2008
1KH5
DownloadVisualize
BU of 1kh5 by Molmil
E. COLI ALKALINE PHOSPHATASE MUTANT (D330N) MIMIC OF THE TRANSITION STATES WITH ALUMINIUM FLUORIDE
分子名称: ALKALINE PHOSPHATASE, ALUMINUM FLUORIDE, MAGNESIUM ION, ...
著者Le Du, M.H, Lamoure, C, Muller, B.H, Bulgakov, O.V, Lajeunesse, E.
登録日2001-11-29
公開日2002-03-13
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
J.Mol.Biol., 316, 2002
1KHJ
DownloadVisualize
BU of 1khj by Molmil
E. COLI ALKALINE PHOSPHATASE MUTANT (D153HD330N) MIMIC OF THE TRANSITION STATES WITH ALUMINIUM FLUORIDE
分子名称: ALUMINUM FLUORIDE, Alkaline phosphatase, ZINC ION
著者Le Du, M.H, Lamoure, C, Muller, B.H, Bulgakov, O.V, Lajeunesse, E, Menez, A, Boulain, J.C.
登録日2001-11-30
公開日2002-03-13
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
J.Mol.Biol., 316, 2002
1KCE
DownloadVisualize
BU of 1kce by Molmil
E. COLI THYMIDYLATE SYNTHASE MUTANT E58Q IN COMPLEX WITH CB3717 AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)
分子名称: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE
著者Sage, C.R, Rutenber, E.E, Stout, T.J, Stroud, R.M.
登録日1996-10-22
公開日1997-04-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献An essential role for water in an enzyme reaction mechanism: the crystal structure of the thymidylate synthase mutant E58Q.
Biochemistry, 35, 1996
9NLQ
DownloadVisualize
BU of 9nlq by Molmil
E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-03-03
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献E.coli Initiation complex with YbiT-EQ2 (Hydrolytic-II)
To Be Published
9NL5
DownloadVisualize
BU of 9nl5 by Molmil
E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-03-02
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献E. coli pre-elongation complex without an A-site tRNA with EttA-EQ2
To Be Published
5JRD
DownloadVisualize
BU of 5jrd by Molmil
E. coli Hydrogenase-1 variant P508A
分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
著者Carr, S.B, Phillips, S.E.V, Armstrong, F.A, Evans, R.M, Brooke, E.J, Islam, S.T.A.
登録日2016-05-06
公開日2017-03-08
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Importance of the Active Site "Canopy" Residues in an O2-Tolerant [NiFe]-Hydrogenase.
Biochemistry, 56, 2017
3CW5
DownloadVisualize
BU of 3cw5 by Molmil
E. coli Initiator tRNA
分子名称: Initiator tRNA
著者Barraud, P, Schmitt, E, Mechulam, Y, Dardel, F, Tisne, C.
登録日2008-04-21
公開日2008-09-02
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis.
Nucleic Acids Res., 36, 2008
8RND
DownloadVisualize
BU of 8rnd by Molmil
Cathepsin S in complex with NNPI-C10 inhibitor
分子名称: 1,2-ETHANEDIOL, Cathepsin S, DI(HYDROXYETHYL)ETHER, ...
著者Petruzzella, A, Lau, K, Pojer, F, Oricchio, E.
登録日2024-01-09
公開日2024-06-05
最終更新日2024-09-11
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins.
Nat.Chem.Biol., 20, 2024
9NLB
DownloadVisualize
BU of 9nlb by Molmil
E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-03-03
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
To Be Published
9NLJ
DownloadVisualize
BU of 9nlj by Molmil
E.coli Initiation complex with Uup-EQ2
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-03-03
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献E.coli Initiation complex with Uup-EQ2
To Be Published
9NLS
DownloadVisualize
BU of 9nls by Molmil
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-03-03
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
To Be Published
9NKL
DownloadVisualize
BU of 9nkl by Molmil
E. coli 70S initiation complex
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-03-01
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献E. coli 70S initiation complex
To Be Published
9NJF
DownloadVisualize
BU of 9njf by Molmil
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-02-27
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
To Be Published
9NJV
DownloadVisualize
BU of 9njv by Molmil
E. coli 70S initiation complex (bL33 absent)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Singh, S, Hunt, J.F.
登録日2025-02-28
公開日2025-04-02
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献E. coli 70S initiation complex (bL33 absent)
To Be Published
1KMK
DownloadVisualize
BU of 1kmk by Molmil
E. coli NifS/CsdB protein at 2.20A with the cysteine perselenide intermediate (residue CSZ).
分子名称: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE, SELENOCYSTEINE LYASE
著者Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2001-12-16
公開日2001-12-21
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
1KMJ
DownloadVisualize
BU of 1kmj by Molmil
E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS).
分子名称: PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
著者Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2001-12-16
公開日2001-12-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
3D27
DownloadVisualize
BU of 3d27 by Molmil
E. coli methionine aminopeptidase with Fe inhibitor W29
分子名称: 4-(3-ethylthiophen-2-yl)benzene-1,2-diol, MANGANESE (II) ION, Methionine aminopeptidase
著者Ye, Q.Z, Chai, S, He, H.Z.
登録日2008-05-07
公開日2008-08-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of inhibitors of Escherichia coli methionine aminopeptidase with the Fe(II)-form selectivity and antibacterial activity.
J.Med.Chem., 51, 2008
8RJ6
DownloadVisualize
BU of 8rj6 by Molmil
E. coli adenylate kinase in complex with ATP and AMP and Mg2+ as a result of enzymatic AP4A hydrolysis.
分子名称: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
登録日2023-12-20
公開日2024-07-10
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
8RJ4
DownloadVisualize
BU of 8rj4 by Molmil
E. coli adenylate kinase in complex with two ADP molecules and Mg2+ as a result of enzymatic AP4A hydrolysis
分子名称: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, CHLORIDE ION, ...
著者Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
登録日2023-12-20
公開日2024-07-10
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
8RJ9
DownloadVisualize
BU of 8rj9 by Molmil
E. coli adenylate kinase Asp84Ala variant in complex with two ADP molecules as a result of enzymatic AP4A hydrolysis.
分子名称: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase
著者Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
登録日2023-12-20
公開日2024-07-10
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon