Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 351 件

4B9N
DownloadVisualize
BU of 4b9n by Molmil
Structure of the high fidelity DNA polymerase I correctly bypassing the oxidative formamidopyrimidine-dA DNA lesion.
分子名称: 5'-D(*CP*AP*AP*(FAX)*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3', 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*TP*TP*TP*TP)-3', DNA POLYMERASE, ...
著者Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
登録日2012-09-05
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4B9S
DownloadVisualize
BU of 4b9s by Molmil
Structure of the high fidelity DNA polymerase I with an oxidative formamidopyrimidine-dG DNA lesion outside of the pre-insertion site.
分子名称: 5'-D(*AP*CP*CP*TP*GP*AP*CP*TP*CP*TP)-3', 5'-D(*CP*AP*TP*FOXP*AP*GP*AP*GP*TP*CP*AP*GP*GP*TP*TP)-3', DNA POLYMERASE, ...
著者Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
登録日2012-09-06
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4BGA
DownloadVisualize
BU of 4bga by Molmil
Nucleotide-bound open form of a putative sugar kinase MK0840 from Methanopyrus kandleri
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, POTASSIUM ION, ...
著者Schacherl, M, Baumann, U.
登録日2013-03-24
公開日2013-11-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Characterization of the Ribonuclease H-Like Type Askha Superfamily Kinase Mk0840 from Methanopyrus Kandleri
Acta Crystallogr.,Sect.D, 69, 2013
4C3X
DownloadVisualize
BU of 4c3x by Molmil
Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1
分子名称: 3-KETOSTEROID DEHYDROGENASE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Rohman, A, van Oosterwijk, N, Thunnissen, A.M.W.H, Dijkstra, B.W.
登録日2013-08-28
公開日2013-11-06
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis of 3-Ketosteroid Delta1-Dehydrogenase from Rhodococcus Erythropolis Sq1 Explain its Catalytic Mechanism
J.Biol.Chem., 288, 2013
4DWR
DownloadVisualize
BU of 4dwr by Molmil
RNA ligase RtcB/Mn2+ complex
分子名称: MANGANESE (II) ION, SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, ...
著者Xia, S, Englert, M, Soll, D, Wang, J.
登録日2012-02-26
公開日2012-09-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3'-terminal phosphate and 5'-OH.
Proc.Natl.Acad.Sci.USA, 109, 2012
4F2R
DownloadVisualize
BU of 4f2r by Molmil
DNA Polymerase I Large Fragment complex 3
分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ...
著者Wang, W, Beese, L.S.
登録日2012-05-08
公開日2013-07-24
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structures of a High-fidelity DNA Polymerase
to be published
4F2S
DownloadVisualize
BU of 4f2s by Molmil
DNA Polymerase I Large Fragment complex 4
分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ...
著者Wang, W, Beese, L.S.
登録日2012-05-08
公開日2013-07-24
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.651 Å)
主引用文献Structures of a High-fidelity DNA Polymerase
to be published
4FFH
DownloadVisualize
BU of 4ffh by Molmil
Crystal Structure of Levan Fructotransferase D54N mutant from Arthrobacter ureafaciens in complex with sucrose
分子名称: Levan fructotransferase, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Park, J, Rhee, S.
登録日2012-06-01
公開日2012-07-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and functional basis for substrate specificity and catalysis of levan fructotransferase.
J.Biol.Chem., 287, 2012
4FLS
DownloadVisualize
BU of 4fls by Molmil
Crystal structure of Amylosucrase inactive double mutant F290K-E328Q from Neisseria polysaccharea in complex with sucrose.
分子名称: Amylosucrase, CHLORIDE ION, GLYCEROL, ...
著者Guerin, F, Champion, E, Moulis, C, Barbe, S, Tran, T.H, Morel, S, Descroix, K, Monsan, P, Mulard, L.A, Remaud-Simeon, M, Andre, I, Mourey, L, Tranier, S.
登録日2012-06-15
公開日2012-10-31
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Applying pairwise combinations of amino Acid mutations for sorting out highly efficient glucosylation tools for chemo-enzymatic synthesis of bacterial oligosaccharides.
J.Am.Chem.Soc., 134, 2012
4GG8
DownloadVisualize
BU of 4gg8 by Molmil
Immune Receptor
分子名称: T-CELL RECEPTOR, SP3.4 ALPHA CHAIN, SP3.4 BETA CHAIN, ...
著者Broughton, S.E, Theodossis, A, Petersen, J, Reid, H.H, Rossjohn, J.
登録日2012-08-06
公開日2012-10-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Biased T cell receptor usage directed against human leukocyte antigen DQ8-restricted gliadin peptides is associated with celiac disease.
Immunity, 37, 2012
4H8U
DownloadVisualize
BU of 4h8u by Molmil
MUTB inactive double mutant D200A-D415N soaked with sucrose and having as bound ligands sucrose in molecule A and the reaction product trehalulose in molecule B
分子名称: 1-O-alpha-D-glucopyranosyl-D-fructose, CALCIUM ION, GLYCEROL, ...
著者Lipski, A, Haser, R, Aghajari, N.
登録日2012-09-24
公開日2013-09-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Insights into product binding in sucrose isomerases from crystal structures of MutB from Rhizobium sp.
To be Published
4HIZ
DownloadVisualize
BU of 4hiz by Molmil
Phage phi92 endosialidase
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Schwarzer, D, Browning, C, Leiman, P.G.
登録日2012-10-12
公開日2014-01-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Crystal Structure of Endosialidase from Phage phi92 that cleaves alpha2,8- and alpha2,9-linked polysialic acid
To be Published
4HPH
DownloadVisualize
BU of 4hph by Molmil
The crystal structure of isomaltulose synthase mutant E295Q from Erwinia rhapontici NX5 in complex with its natural substrate sucrose
分子名称: CALCIUM ION, GLYCEROL, Sucrose isomerase, ...
著者Xu, Z, Li, S, Xu, H, Zhou, J.
登録日2012-10-23
公開日2013-10-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The Structural Basis of Erwinia rhapontici Isomaltulose Synthase
Plos One, 8, 2013
4I9E
DownloadVisualize
BU of 4i9e by Molmil
Crystal structure of Aspartyl phosphate phosphatase F from Bacillus subtilis
分子名称: Response regulator aspartate phosphatase F, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Marina, A, Gallego, F.
登録日2012-12-05
公開日2013-11-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of Rap phosphatase inhibition by Phr peptides
Plos Biol., 11, 2013
4IN0
DownloadVisualize
BU of 4in0 by Molmil
Crystal Structure of human splicing factor dim2/TXNL4B
分子名称: Thioredoxin-like protein 4B, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Jin, T.C, Guo, F, Zhang, Y.Z.
登録日2013-01-03
公開日2013-03-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.327 Å)
主引用文献High-resolution crystal structure of human Dim2/TXNL4B.
Acta Crystallogr.,Sect.F, 69, 2013
4ISJ
DownloadVisualize
BU of 4isj by Molmil
RNA Ligase RtcB in complex with Mn(II)
分子名称: MANGANESE (II) ION, SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, ...
著者Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T.
登録日2013-01-16
公開日2013-03-20
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.344 Å)
主引用文献Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation.
Biochemistry, 52, 2013
4ISZ
DownloadVisualize
BU of 4isz by Molmil
RNA ligase RtcB in complex with GTP alphaS and Mn(II)
分子名称: GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
著者Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T.
登録日2013-01-17
公開日2013-04-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.303 Å)
主引用文献Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation.
Biochemistry, 52, 2013
4IT0
DownloadVisualize
BU of 4it0 by Molmil
Structure of the RNA ligase RtcB-GMP/Mn(II) complex
分子名称: GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
著者Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T.
登録日2013-01-17
公開日2013-03-20
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation.
Biochemistry, 52, 2013
4JRN
DownloadVisualize
BU of 4jrn by Molmil
ROP18 kinase domain in complex with AMP-PNP and sucrose
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Rhoptry kinase family protein, ...
著者Lim, D, Gold, D.A, Lindsay, J, Rosowski, E.E, Niedelman, W, Yaffe, M.B, Saeij, J.P.J.
登録日2013-03-21
公開日2013-10-23
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Structure of the Toxoplasma gondii ROP18 kinase domain reveals a second ligand binding pocket required for acute virulence.
J.Biol.Chem., 288, 2013
4JXG
DownloadVisualize
BU of 4jxg by Molmil
Crystal Structure of AmpC beta-lactamase from E. coli in Complex with Oxacillin
分子名称: (2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid, Beta-lactamase, PHOSPHATE ION, ...
著者Wallar, B.J, Powers, R.A, Docter, B.E.
登録日2013-03-28
公開日2014-10-29
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Complexed structures of AmpC beta-lactamase
To be Published
4KV8
DownloadVisualize
BU of 4kv8 by Molmil
Crystal structure of HIV RT in complex with BILR0355BS
分子名称: 11-ethyl-5-methyl-8-[2-(1-oxidanylquinolin-4-yl)oxyethyl]dipyrido[3,2-[1,4]diazepin-6-one, HIV Reverse transcriptase P51, HIV Reverse transcriptase P66, ...
著者Coulombe, R.
登録日2013-05-22
公開日2013-07-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献N- versus O-alkylation: Utilizing NMR methods to establish reliable primary structure determinations for drug discovery.
Bioorg.Med.Chem.Lett., 23, 2013
4KZD
DownloadVisualize
BU of 4kzd by Molmil
Crystal structure of an RNA aptamer in complex with fluorophore and Fab
分子名称: 4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol, BL3-6 Fab antibody, heavy chain, ...
著者Huang, H, Suslov, N.B, Li, N, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A.
登録日2013-05-29
公開日2014-06-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.186 Å)
主引用文献A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore.
Nat.Chem.Biol., 10, 2014
4M00
DownloadVisualize
BU of 4m00 by Molmil
Crystal structure of the ligand binding region of staphylococcal adhesion SraP
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Serine-rich adhesin for platelets, ...
著者Yang, Y.H, Jiang, Y.L, Zhang, J, Wang, L, Chen, Y, Zhou, C.Z.
登録日2013-08-01
公開日2014-06-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural Insights into SraP-Mediated Staphylococcus aureus Adhesion to Host Cells
Plos Pathog., 10, 2014
4NPB
DownloadVisualize
BU of 4npb by Molmil
The crystal structure of thiol:disulfide interchange protein DsbC from Yersinia pestis CO92
分子名称: PHOSPHATE ION, Protein disulfide isomerase II, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Tan, K, Zhou, M, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2013-11-21
公開日2013-12-25
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.147 Å)
主引用文献The crystal structure of thiol:disulfide interchange protein DsbC from Yersinia pestis CO92
To be Published
4QSD
DownloadVisualize
BU of 4qsd by Molmil
Crystal structure of atu4361 sugar transporter from Agrobacterium Fabrum C58, target efi-510558, with bound sucrose
分子名称: ABC-TYPE SUGAR TRANSPORTER, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-07-03
公開日2014-08-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Crystal Structure of Maltoside Transporter Atu4361 from Agrobacterium Fabrum, Target Efi-510558
To be Published

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon