PDB: 1585 件ウェブページステータス検索Chemie searchBIRD

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5NL5	Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLF	Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLJ	Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
3NS8	Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Ubiquitin 著者 Zhang, D, LaRonde-LeBlanc, N, Fushman, D. 登録日 2010-07-01 公開日 2011-07-20 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.707 Å) 主引用文献 Structural and biochemical studies of the open state of Lys48-linked diubiquitin. Biochim.Biophys.Acta, 1823, 2012
5N9V	NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila. 分子名称: NAD(P)(+)--arginine ADP-ribosyltransferase 著者 Chiarini, V, Tossavainen, H. 登録日 2017-02-27 公開日 2018-03-21 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus. Biochim Biophys Acta Gen Subj, 1863, 2019
5O44	Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages. 分子名称: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ... 著者 Padala, P, Isupov, M.N, Wiener, R. 登録日 2017-05-26 公開日 2017-11-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages. J. Mol. Biol., 429, 2017
6A6I	Crystal structure of the winged-helix domain of Cockayne syndrome group B protein in complex with ubiquitin 分子名称: CHLORIDE ION, Excision repair cross-complementing rodent repair deficiency, complementation group 6 variant, ... 著者 Takahashi, T.S, Sato, Y, Fukai, S. 登録日 2018-06-28 公開日 2019-02-13 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural basis of ubiquitin recognition by the winged-helix domain of Cockayne syndrome group B protein. Nucleic Acids Res., 47, 2019
3OJ3	Crystal structure of the A20 ZnF4 and ubiquitin complex 分子名称: Tumor necrosis factor alpha-induced protein 3, Ubiquitin, ZINC ION 著者 Bosanac, I, Hymowitz, S.G. 登録日 2010-08-20 公開日 2010-12-08 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Ubiquitin Binding to A20 ZnF4 Is Required for Modulation of NF-KB Signaling Mol.Cell, 40, 2010
5OXI	C-terminally retracted ubiquitin L67S mutant 分子名称: SULFATE ION, Ubiquitin L67S mutant 著者 Gladkova, C.G, Schubert, A.F, Wagstaff, J.L, Pruneda, J.N, Freund, S.M.V, Komander, D. 登録日 2017-09-06 公開日 2017-11-22 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1. EMBO J., 36, 2017
5NVG	Thr12 Phosphorylated Ubiquitin 分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B 著者 Huguenin-Dezot, N. 登録日 2017-05-04 公開日 2017-05-31 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing. Nat. Methods, 14, 2017
5NMC	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-05 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
3ONS	Crystal structure of Human Ubiquitin in a new crystal form 分子名称: Ubiquitin 著者 Amodeo, G.A, Huang, K.Y, Mcdermott, A.E, Tong, L. 登録日 2010-08-30 公開日 2011-02-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The structure of human ubiquitin in 2-methyl-2,4-pentanediol: a new conformational switch. Protein Sci., 20, 2011
5OHV	K33-specific affimer bound to K33 diUb 分子名称: GLYCEROL, K33-specific affimer, SULFATE ION, ... 著者 Michel, M.A, Komander, D. 登録日 2017-07-18 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling. Mol. Cell, 68, 2017
5OXH	C-terminally retracted ubiquitin T66V/L67N mutant 分子名称: SULFATE ION, Ubiquitin T66V/L67N mutant 著者 Gladkova, C, Schubert, A.F, Wagstaff, J.L, Pruneda, J.P, Freund, S.M.V, Komander, D. 登録日 2017-09-06 公開日 2017-11-22 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.601 Å) 主引用文献 An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1. EMBO J., 36, 2017
3NOB	Structure of K11-linked di-ubiquitin 分子名称: SULFATE ION, Ubiquitin 著者 Dong, K.C, Matsumoto, M.L, Hymowitz, S.G. 登録日 2010-06-25 公開日 2010-08-11 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 K11-Linked Polyubiquitination in Cell Cycle Control Revealed by a K11 Linkage-Specific Antibody. Mol.Cell, 39, 2010
3N30	Crystal Structure of cubic Zn3-hUb (human ubiquitin) adduct 分子名称: Ubiquitin, ZINC ION 著者 Siliqi, D, Caliandro, R, Arnesano, F, Natile, G, Falini, G, Fermani, S, Belviso, B.D. 登録日 2010-05-19 公開日 2011-01-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystallographic analysis of metal-ion binding to human ubiquitin. Chemistry, 17, 2011
3N32	The crystal structure of human Ubiquitin adduct with Zeise's salt 分子名称: PLATINUM (II) ION, Ubiquitin 著者 Siliqi, D, Caliandro, R, Falini, G, Fermani, S, Natile, G, Arnesano, F, Belviso, B.D. 登録日 2010-05-19 公開日 2011-01-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.795 Å) 主引用文献 Crystallographic analysis of metal-ion binding to human ubiquitin. Chemistry, 17, 2011
7M4O	Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4M	Crystal structure of RBR E3 ligase RNF216 with ubiquitin 分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4N	Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin 分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
5M93	Crystal structure of SdeA-modified ubiquitin. 分子名称: Polyubiquitin-B, SULFATE ION, alpha-D-ribofuranose 著者 Kalayil, S, Bhogaraju, S, Dikic, I. 登録日 2016-10-31 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.793 Å) 主引用文献 Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination. Cell, 167, 2016
5MN9	Crystal structure of MINDY-1 tMIU in complex with K48-diUb 分子名称: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a 著者 Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y. 登録日 2016-12-13 公開日 2017-01-25 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains. EMBO Rep., 18, 2017
5NL4	Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
3HM3	The Structure and conformation of Lys-63 linked tetra-ubiquitin 分子名称: Ubiquitin, ZINC ION 著者 Datta, A.B, Hura, G.L, Wolberger, C. 登録日 2009-05-28 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 The structure and conformation of Lys63-linked tetraubiquitin. J.Mol.Biol., 392, 2009
7NBB	Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3 分子名称: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ... 著者 Lange, S.M, Kulathu, Y. 登録日 2021-01-26 公開日 2022-08-10 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains. Nat.Struct.Mol.Biol., 2024

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