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6XQC
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BU of 6xqc by Molmil
UbKEKS
分子名称: Polyubiquitin-B
著者Delattre, P, Letourneau, D, Lavigne, P, Roucou, X, Boisvert, F.M.
登録日2020-07-09
公開日2021-05-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR structure of UbKEKS
To Be Published
3H7P
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BU of 3h7p by Molmil
Crystal structure of K63-linked di-ubiquitin
分子名称: CADMIUM ION, Ubiquitin
著者Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
登録日2009-04-28
公開日2009-09-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
3H1U
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BU of 3h1u by Molmil
Structure of ubiquitin in complex with Cd ions
分子名称: CADMIUM ION, Ubiquitin
著者Qureshi, I.A, Ferron, F, Cheung, P, Lescar, J.
登録日2009-04-14
公開日2009-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystallographic structure of ubiquitin in complex with cadmium ions
BMC RES NOTES, 2, 2009
3H7S
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BU of 3h7s by Molmil
Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture
分子名称: Ubiquitin, ZINC ION
著者Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
登録日2009-04-28
公開日2009-09-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
8A67
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BU of 8a67 by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with matured synthetic nanobody NbSL3.3Q (3rd generation)
分子名称: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ...
著者Lange, S.M, Kulathu, Y.
登録日2022-06-16
公開日2023-02-15
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains.
Nat.Struct.Mol.Biol., 2024
3HM3
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BU of 3hm3 by Molmil
The Structure and conformation of Lys-63 linked tetra-ubiquitin
分子名称: Ubiquitin, ZINC ION
著者Datta, A.B, Hura, G.L, Wolberger, C.
登録日2009-05-28
公開日2009-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献The structure and conformation of Lys63-linked tetraubiquitin.
J.Mol.Biol., 392, 2009
8ADB
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BU of 8adb by Molmil
Viral tegument-like DUBs
分子名称: CITRIC ACID, Deubiquitinating enzyme, Ubiquitin, ...
著者Erven, I, Abraham, E.T, Hermanns, T, Baumann, U, Hofmann, K.
登録日2022-07-08
公開日2023-02-15
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins.
Nat Commun, 13, 2022
7W54
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BU of 7w54 by Molmil
Crystal structure of a bacterial OTU DUB with Ub-PA
分子名称: Lpg2248, Polyubiquitin-B, prop-2-en-1-amine
著者Zhen, X, Ouyang, S.Y.
登録日2021-11-29
公開日2022-08-24
最終更新日2023-04-05
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structural basis for the dual catalytic activity of the Legionella pneumophila ovarian tumor (OTU) domain deubiquitinase LotA.
J.Biol.Chem., 298, 2022
7UYH
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BU of 7uyh by Molmil
Structure of the first OTU domain from Legionella pneumophila effector protein LotA bound to K6-linked diUb
分子名称: LotA, Ubiquitin
著者Warren, G.D, Pruneda, J.N.
登録日2022-05-06
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Mechanism of Lys6 poly-ubiquitin specificity by the L. pneumophila deubiquitinase LotA.
Mol.Cell, 83, 2023
6KOW
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BU of 6kow by Molmil
Retracted state of S65/T66 double-phosphorylated ubiquitin
分子名称: Polyubiquitin-B
著者Dong, X, Tang, C.
登録日2019-08-13
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
5JZE
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BU of 5jze by Molmil
Erve virus viral OTU domain protease in complex with mouse ISG15
分子名称: CITRATE ANION, RNA-dependent RNA polymerase, Ubiquitin-like protein ISG15, ...
著者Deaton, M.K, Dzimianski, J.V, Pegan, S.D.
登録日2016-05-16
公開日2016-10-19
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Biochemical and Structural Insights into the Preference of Nairoviral DeISGylases for Interferon-Stimulated Gene Product 15 Originating from Certain Species.
J.Virol., 90, 2016
5K9P
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BU of 5k9p by Molmil
Ser20 phosphorylated ubiquitin
分子名称: Polyubiquitin-B
著者Huguenin-Dezot, N, Chin, J.W.
登録日2016-06-01
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Synthesis of Isomeric Phosphoubiquitin Chains Reveals that Phosphorylation Controls Deubiquitinase Activity and Specificity.
Cell Rep, 16, 2016
6FJ7
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BU of 6fj7 by Molmil
Caldiarchaeum Subterraneum Ubiquitin
分子名称: SULFATE ION, Ubiquitin-like protein
著者Wojtynek, M, Martin, J, Hartmann, M.D.
登録日2018-01-21
公開日2018-07-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Rpn11-mediated ubiquitin processing in an ancestral archaeal ubiquitination system.
Nat Commun, 9, 2018
5JBV
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BU of 5jbv by Molmil
Lys27-linked triubiquitin
分子名称: D-ubiquitin, NITRATE ION, Ubiquitin
著者Pan, M, Gao, S, Zheng, Y.
登録日2016-04-13
公開日2016-05-18
最終更新日2022-02-09
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献Structure of Lys27-linked triubiquitin
To Be Published
5KHY
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BU of 5khy by Molmil
Crystal structure of oxime-linked K6 diubiquitin
分子名称: ETHANOLAMINE, Polyubiquitin-B, ZINC ION
著者Stanley, M, Virdee, S.
登録日2016-06-16
公開日2016-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates.
Chembiochem, 17, 2016
5J8P
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BU of 5j8p by Molmil
Lys27-linked diubiquitin
分子名称: D-ubiquitin, MAGNESIUM ION, ubiquitin
著者Pan, M, Gao, S, Zheng, Y.
登録日2016-04-08
公開日2016-05-18
最終更新日2022-02-09
実験手法X-RAY DIFFRACTION (1.554 Å)
主引用文献Structure of Lys27-linked diubiquitin
To Be Published
8XEP
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BU of 8xep by Molmil
Crystal structure of a Legionella pneumophila type IV effector in complex with ubiquitin
分子名称: SULFATE ION, Type IV effector MavL, Ubiquitin
著者Tan, J.X, Wang, X.F, Zhou, Y, Zhu, Y.Q.
登録日2023-12-12
公開日2024-05-01
最終更新日2024-07-24
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Legionella effector LnaB is a phosphoryl AMPylase that impairs phosphosignalling.
Nature, 631, 2024
6NJD
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BU of 6njd by Molmil
Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby) complexed with Met-1 linked di-ubiquitin
分子名称: Di-ubiquitin, MAGNESIUM ION, RavD
著者Wang, X, Zhou, Y, Zhu, Y.
登録日2019-01-03
公開日2019-05-22
最終更新日2020-01-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献A bacterial effector deubiquitinase specifically hydrolyses linear ubiquitin chains to inhibit host inflammatory signalling.
Nat Microbiol, 4, 2019
6NXL
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BU of 6nxl by Molmil
Ubiquitin binding variants
分子名称: Polyubiquitin-B
著者Miller, D.J, Watson, E.R.
登録日2019-02-08
公開日2020-01-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.
Proc.Natl.Acad.Sci.USA, 116, 2019
5JBY
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BU of 5jby by Molmil
Lys27-linked triubiquitin
分子名称: D-ubiquitin, ubiquitin
著者Pan, M, Gao, S, Zheng, Y.
登録日2016-04-14
公開日2016-07-20
最終更新日2022-02-09
実験手法X-RAY DIFFRACTION (1.987 Å)
主引用文献Structure of Lys27-linked triubiquitin
To Be Published
6MDH
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BU of 6mdh by Molmil
X-ray crystal structure of ISG15 from Myotis davidii
分子名称: Ubiquitin-like protein ISG15
著者Goodwin, O.Y, Langley, C.A, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D.
登録日2018-09-04
公開日2018-12-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Structure of interferon-stimulated gene product 15 (ISG15) from the bat species Myotis davidii and the impact of interdomain ISG15 interactions on viral protein engagement.
Acta Crystallogr D Struct Biol, 75, 2019
6E2B
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BU of 6e2b by Molmil
Ubiquitin in complex with Pt(2-phenilpyridine)(PPh3)
分子名称: GLYCEROL, SULFATE ION, Ubiquitin, ...
著者Zhemkov, V.A, Kim, M.
登録日2018-07-11
公開日2018-11-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Reactions of Cyclometalated Platinum(II) [Pt(N∧C)(PR3)Cl] Complexes with Imidazole and Imidazole-Containing Biomolecules: Fine-Tuning of Reactivity and Photophysical Properties via Ligand Design.
Inorg Chem, 58, 2019
6GF1
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BU of 6gf1 by Molmil
The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome
分子名称: SULFATE ION, Ubiquitin D
著者Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S.
登録日2018-04-28
公開日2018-08-29
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.925 Å)
主引用文献The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation.
Nat Commun, 9, 2018
7RMA
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BU of 7rma by Molmil
Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant)
分子名称: Ankyrin repeat domain-containing protein 13D, SODIUM ION, SULFATE ION, ...
著者Singer, A.U, Manczyk, N, Veggiani, G, Sicheri, F, Sidhu, S.S.
登録日2021-07-27
公開日2022-05-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Panel of Engineered Ubiquitin Variants Targeting the Family of Human Ubiquitin Interacting Motifs.
Acs Chem.Biol., 17, 2022
7S6O
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BU of 7s6o by Molmil
The crystal structure of Lys48-linked di-ubiquitin
分子名称: ACETATE ION, Ubiquitin
著者Osipiuk, J, Tesar, C, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A.
登録日2021-09-14
公開日2021-09-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023

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