PDB: 13252 件ウェブページステータス検索Chemie searchBIRD

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5TYX	DNA Polymerase Mu Product Complex, Mn2+ (15 min) 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA (5'-D(*CP*GP*GP*CP*AP*TP*AP*CP*G)-3'), ... 著者 Jamsen, J.A, Wilson, S.H. 登録日 2016-11-21 公開日 2017-08-30 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.948 Å) 主引用文献 Time-lapse crystallography snapshots of a double-strand break repair polymerase in action. Nat Commun, 8, 2017
5TYE	DNA Polymerase Mu Product Complex, 10 mM Mg2+ (60 min) 分子名称: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Jamsen, J.A, Wilson, S.H. 登録日 2016-11-19 公開日 2017-08-30 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.047 Å) 主引用文献 Time-lapse crystallography snapshots of a double-strand break repair polymerase in action. Nat Commun, 8, 2017
2QJ1	Crystal structure of infectious bursal disease virus VP1 polymerase incubated with an oligopeptide mimicking the VP3 C-terminus 分子名称: Infectious bursal disease virus VP1 polymerase 著者 Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N. 登録日 2007-07-06 公開日 2007-11-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.48 Å) 主引用文献 Unprecedented activation mechanism of a non-canonical RNA-dependent RNA polymerase To be Published
4M3O	Crystal structure of K.lactis Rtr1 NTD 分子名称: KLLA0F12672p, ZINC ION 著者 Hsu, P.L, Yang, W, Zheng, N, Varani, G. 登録日 2013-08-06 公開日 2014-07-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Rtr1 Is a Dual Specificity Phosphatase That Dephosphorylates Tyr1 and Ser5 on the RNA Polymerase II CTD. J.Mol.Biol., 426, 2014
8F72	Phage P32 gp64- RNA polymerase 分子名称: MAGNESIUM ION, TPR_REGION domain-containing protein 著者 Bae, B, Nair, S.K. 登録日 2022-11-17 公開日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Thermophage RNA polymerase To Be Published
2MOW	Structure of Nrd1p CID - Trf4p NIM complex 分子名称: Poly(A) RNA polymerase protein 2, Protein NRD1 著者 Kabzinski, T, Stefl, R, Kubicek, K. 登録日 2014-05-06 公開日 2014-08-13 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation. Mol.Cell, 55, 2014
2WNM	Solution structure of Gp2 分子名称: GENE 2 著者 Camara, B, Liu, M, Shadrinc, A, Liu, B, Simpson, P, Weinzierl, R, Severinovc, K, Cota, E, Matthews, S, Wigneshweraraj, S.R. 登録日 2009-07-13 公開日 2010-02-16 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 T7 Phage Protein Gp2 Inhibits the Escherichia Coli RNA Polymerase by Antagonizing Stable DNA Strand Separation Near the Transcription Start Site. Proc.Natl.Acad.Sci.USA, 107, 2010
5UI6	Solution NMR Structure of Lasso Peptide Acinetodin 分子名称: Acinetodin 著者 Bushin, L.B, Metelev, M, Severinov, K, Seyedsayamdost, M.R. 登録日 2017-01-12 公開日 2017-02-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae. ACS Chem. Biol., 12, 2017
5UI7	Solution NMR Structure of Lasso Peptide Klebsidin 分子名称: Klebsidin 著者 Bushin, L.B, Metelev, M, Severinov, K, Seyedsayamdost, M.R. 登録日 2017-01-13 公開日 2017-02-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae. ACS Chem. Biol., 12, 2017
3UB0	Crystal structure of the nonstructural protein 7 and 8 complex of Feline Coronavirus 分子名称: Non-structural protein 6, nsp6,, Non-structural protein 7, ... 著者 Xiao, Y, Hilgenfeld, R, Ma, Q. 登録日 2011-10-22 公開日 2012-02-22 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Nonstructural proteins 7 and 8 of feline coronavirus form a 2:1 heterotrimer that exhibits primer-independent RNA polymerase activity. J.Virol., 86, 2012
7Y9Y	Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex 分子名称: CHAT domain-containing protein, CRISPR-associated RAMP family protein, RNA (27-MER), ... 著者 Kato, K, Okazaki, S, Ishikawa, J, Isayama, Y, Nishizawa, T, Nishimasu, H. 登録日 2022-06-26 公開日 2022-11-09 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (2.77 Å) 主引用文献 RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease. Science, 378, 2022
7Y9X	Structure of the Cas7-11-Csx29-guide RNA complex 分子名称: CHAT domain-containing protein, CRISPR-associated RAMP family protein, ZINC ION, ... 著者 Kato, K, Okazaki, S, Ishikawa, J, Isayama, Y, Nishizawa, T, Nishimasu, H. 登録日 2022-06-26 公開日 2022-11-09 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (2.49 Å) 主引用文献 RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease. Science, 378, 2022
2ZNI	Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense 分子名称: CALCIUM ION, Pyrrolysyl-tRNA synthetase, bacterial tRNA 著者 Nozawa, K, Araiso, Y, Soll, D, Ishitani, R, Nureki, O. 登録日 2008-04-25 公開日 2008-12-30 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality Nature, 457, 2009
2O8K	NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element 分子名称: 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)-3', RNA polymerase sigma factor RpoN 著者 Doucleff, M, Pelton, J.G, Lee, P.S, Wemmer, D.E. 登録日 2006-12-12 公開日 2007-07-17 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Structural basis of DNA recognition by the alternative sigma-factor, sigma54. J.Mol.Biol., 369, 2007
4FQG	Crystal structure of the TCERG1 FF4-6 tandem repeat domain 分子名称: CHLORIDE ION, NICKEL (II) ION, Transcription elongation regulator 1 著者 Liu, J, Fan, S, Lee, C.J, Greenleaf, A.L, Zhou, P. 登録日 2012-06-25 公開日 2013-02-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Specific Interaction of the Transcription Elongation Regulator TCERG1 with RNA Polymerase II Requires Simultaneous Phosphorylation at Ser2, Ser5, and Ser7 within the Carboxyl-terminal Domain Repeat. J.Biol.Chem., 288, 2013
5HCI	GPN-loop GTPase Npa3 in complex with GDP 分子名称: GLYCEROL, GPN-loop GTPase 1, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Niesser, J, Wagner, F.R, Kostrewa, D, Muehlbacher, W, Cramer, P. 登録日 2016-01-04 公開日 2016-01-20 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly. Mol.Cell.Biol., 36, 2015
5HCN	GPN-loop GTPase Npa3 in complex with GMPPCP 分子名称: GLYCEROL, GPN-loop GTPase 1, LAURIC ACID, ... 著者 Niesser, J, Wagner, F.R, Kostrewa, D, Muehlbacher, W, Cramer, P. 登録日 2016-01-04 公開日 2016-01-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly. Mol.Cell.Biol., 36, 2015
2P4V	Crystal structure of the transcript cleavage factor, GreB at 2.6A resolution 分子名称: Transcription elongation factor greB 著者 Vassylyeva, M.N, Svetlov, V, Dearborn, A.D, Klyuyev, S, Artsimovitch, I, Vassylyev, D.G. 登録日 2007-03-13 公開日 2008-01-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors. Embo Rep., 8, 2007
1DDE	STRUCTURE OF THE DNAG CATALYTIC CORE 分子名称: DNA PRIMASE, YTTRIUM ION 著者 Keck, J.L, Roche, D.D, Lynch, A.S, Berger, J.M. 登録日 1999-11-09 公開日 2000-04-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure of the RNA polymerase domain of E. coli primase. Science, 287, 2000
1DD9	STRUCTURE OF THE DNAG CATALYTIC CORE 分子名称: DNA PRIMASE, STRONTIUM ION 著者 Keck, J.L, Roche, D.D, Lynch, A.S, Berger, J.M. 登録日 1999-11-09 公開日 2000-04-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure of the RNA polymerase domain of E. coli primase. Science, 287, 2000
8B8B	Multimerization domain of Munia virus 1 phosphoprotein 分子名称: Munia Bornavirus 1 phosphoprotein, NITRATE ION 著者 Chenavier, F, Tarbouriech, N, Bourhis, J.M, Tomonaga, K, Horie, M, Crepin, T. 登録日 2022-10-04 公開日 2022-11-23 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Borna Disease Virus 1 Phosphoprotein Forms a Tetramer and Interacts with Host Factors Involved in DNA Double-Strand Break Repair and mRNA Processing. Viruses, 14, 2022
2KM4	Solution structure of Rtt103 CTD interacting domain 分子名称: Regulator of Ty1 transposition protein 103 著者 Lunde, B.M, Reichow, S, Kim, M, Leeper, T.C, Becker, R, Buratowski, S, Meinhart, A, Varani, G. 登録日 2009-07-20 公開日 2010-09-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain. Nat.Struct.Mol.Biol., 17, 2010
1XJR	The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome 分子名称: MAGNESIUM ION, s2m RNA 著者 Robertson, M.P, Igel, H, Baertsch, R, Haussler, D, Ares Jr, M, Scott, W.G. 登録日 2004-09-24 公開日 2005-02-01 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The structure of a rigorously conserved RNA element within the SARS virus genome Plos Biol., 3, 2005
1YMO	Solution structure of the P2b-P3 pseudoknot from human telomerase RNA 分子名称: Telomerase RNA P2b-P3 pseudoknot 著者 Theimer, C.A, Blois, C.A, Feigon, J. 登録日 2005-01-21 公開日 2005-03-15 最終更新日 2023-11-29 実験手法 SOLUTION NMR 主引用文献 Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function Mol.Cell, 17, 2005
3K8D	Crystal structure of E. coli lipopolysaccharide specific CMP-KDO synthetase in complex with CTP and 2-deoxy-Kdo 分子名称: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, 3-deoxy-manno-octulosonate cytidylyltransferase, CYTIDINE-5'-TRIPHOSPHATE, ... 著者 Heyes, D.J, Levy, C.W, Lafite, P, Scrutton, N.S, Leys, D. 登録日 2009-10-14 公開日 2009-11-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure-based mechanism of CMP-2-keto-3-deoxymanno-octulonic acid synthetase: convergent evolution of a sugar-activating enzyme with DNA/RNA polymerases J.Biol.Chem., 284, 2009

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