PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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8QZ8	Tilapia Lake Virus polymerase in vRNA pre-termination state (transcriptase conformation) 分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Polymerase acidic protein (PA-like), ... 著者 Arragain, B, Cusack, S. 登録日 2023-10-26 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.13 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8R4W	(3+1) hybrid-2 G-quadruplex with a -(llp) loop progression 分子名称: DNA (25-MER) 著者 Jana, J, Vianney, Y.M, Weisz, K. 登録日 2023-11-14 公開日 2023-12-27 最終更新日 2024-01-31 実験手法 SOLUTION NMR 主引用文献 Impact of loop length and duplex extensions on the design of hybrid-type G-quadruplexes. Chem.Commun.(Camb.), 60, 2024
8R57	CryoEM structure of wheat 40S ribosomal subunit, head domain 分子名称: 40S ribosomal protein S12, 40S ribosomal protein S15, 40S ribosomal protein S16, ... 著者 Kravchenko, O.V, Baymukhametov, T.N, Afonina, Z.A, Vasilenko, K.S. 登録日 2023-11-16 公開日 2023-12-27 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.55 Å) 主引用文献 High-Resolution Structure and Internal Mobility of a Plant 40S Ribosomal Subunit. Int J Mol Sci, 24, 2023
8QCF	yeast cytoplasmic exosome-Ski2 complex degrading a RNA substrate 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Antiviral helicase SKI2, Exosome complex component CSL4, ... 著者 Keidel, A, Koegel, A, Reichelt, P, Kowalinski, E, Schaefer, I.B, Conti, E. 登録日 2023-08-25 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.55 Å) 主引用文献 Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly. Mol.Cell, 83, 2023
1O7O	Roles of Individual Residues of Alpha-1,3 Galactosyltransferases in Substrate Binding and Catalysis 分子名称: MANGANESE (II) ION, N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE, ... 著者 Zhang, Y, Swaminathan, G.J, Deshpande, A, Natesh, R, Xie, Z, Acharya, K.R, Brew, K. 登録日 2002-11-11 公開日 2003-11-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Roles of individual enzyme-substrate interactions by alpha-1,3-galactosyltransferase in catalysis and specificity. Biochemistry, 42, 2003
8RE4	Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 5nt pre-translocated complex 分子名称: DNA (47-MER), DNA (50-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Gao, F, Zhang, X. 登録日 2023-12-10 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis of sigma 54 displacement and promoter escape in bacterial transcription. Proc.Natl.Acad.Sci.USA, 121, 2024
6XX3	Crystal structure of the c-Src SH3 domain H122R-Q128E mutant in complex with Cu(II) at pH 6.5 co-crystallized with methyl beta-cyclodextrin 分子名称: COPPER (II) ION, Cyclic 2,3-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-2,6-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-3-O-methyl-alpha-D-glucopyranose, Proto-oncogene tyrosine-protein kinase Src 著者 Camara-Artigas, A. 登録日 2020-01-26 公開日 2020-04-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.36 Å) 主引用文献 The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase. J.Biol.Inorg.Chem., 25, 2020
8RED	Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 8nt complex 分子名称: DNA (46-MER), DNA (51-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Gao, F, Zhang, X. 登録日 2023-12-10 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of sigma 54 displacement and promoter escape in bacterial transcription. Proc.Natl.Acad.Sci.USA, 121, 2024
8QY9	J22.9-H, fully humanized Fab Fragment based on chimeric J22.9-xi IgG against BCMA 分子名称: COPPER (II) ION, Fab heavy chain of J22.9-H, Fab light chain of J22.9-H, ... 著者 Marino, S.F, Daumke, O. 登録日 2023-10-25 公開日 2024-01-17 最終更新日 2024-08-14 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure-based humanization of a therapeutic antibody for multiple myeloma. J.Mol.Med., 2024
8QYB	J22.9-ISY, fully humanized and CDR optimized Fab Fragment based on chimeric J22.9-xi IgG against BCMA 分子名称: COPPER (II) ION, Fab heavy chain of J22.9-ISY, Fab light chain of J22.9-ISY, ... 著者 Marino, S.F, Daumke, O. 登録日 2023-10-25 公開日 2024-01-17 最終更新日 2024-08-14 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Structure-based humanization of a therapeutic antibody for multiple myeloma. J.Mol.Med., 2024
4Y1V	Complex of human Galectin-1 and Galbeta1-3GlcNAc 分子名称: Galectin-1, beta-D-galactopyranose-(1-3)-methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside 著者 Lin, H.Y, Hsieh, T.J, Lin, C.H. 登録日 2015-02-09 公開日 2016-04-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Structural basis of human galectin-1 inhibition with Ki values in the micro- to nanomolar range To Be Published
4XLA	Tailspike protein mutant D339A of E. coli bacteriophage HK620 IN COMPLEX WITH PENTASACCHARIDE 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-13 公開日 2016-01-20 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
8REE	Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 9nt complex 分子名称: DNA (45-MER), DNA (49-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Gao, F, Zhang, X. 登録日 2023-12-10 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of sigma 54 displacement and promoter escape in bacterial transcription. Proc.Natl.Acad.Sci.USA, 121, 2024
8REC	Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 7nt complex 分子名称: DNA (46-MER), DNA (51-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Gao, F, Zhang, X. 登録日 2023-12-10 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis of sigma 54 displacement and promoter escape in bacterial transcription. Proc.Natl.Acad.Sci.USA, 121, 2024
8RJC	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Lewis, A.J.O, Hegde, R.S. 登録日 2023-12-20 公開日 2024-01-24 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.90061 Å) 主引用文献 Structural analysis of the dynamic ribosome-translocon complex. Elife, 13, 2024
6Y98	Crystal Structure of subtype-switched Epithelial Adhesin 9 to 1 A domain (Epa9-CBL2Epa1) from Candida glabrata in complex with beta-lactose 分子名称: CALCIUM ION, PA14 domain-containing protein, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose 著者 Hoffmann, D, Diderrich, R, Kock, M, Friederichs, S, Reithofer, V, Essen, L.-O, Moesch, H.-U. 登録日 2020-03-06 公開日 2020-07-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Functional reprogramming ofCandida glabrataepithelial adhesins: the role of conserved and variable structural motifs in ligand binding. J.Biol.Chem., 295, 2020
4XM3	Tailspike protein mutant E372A of E. coli bacteriophage HK620 in complex with pentasaccharide 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-14 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.27 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
8QKX	Solution structure of a bimolecular quadruplex-duplex hybrid containing a V-shaped loop 分子名称: DNA (5'-D(*CP*TP*CP*CP*AP*GP*CP*TP*GP*GP*GP*TP*GP*AP*GP*GP*GP*GP*CP*TP*GP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*GP*GP*AP*GP*CP*TP*GP*GP*AP*GP*TP*T)-3') 著者 Vianney, Y.M, Weisz, K. 登録日 2023-09-18 公開日 2024-02-07 実験手法 SOLUTION NMR 主引用文献 Structural Aspects of Split G-Quadruplexes in Quadruplex-Duplex Hybrid Systems Chemistryselect, 2024
8RI5	Crystal structure of transplatin/B-DNA adduct obtained upon 48 h of soaking 分子名称: AMMONIA, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, ... 著者 Tito, G, Troisi, R, Ferraro, G, Sica, F, Merlino, A. 登録日 2023-12-18 公開日 2024-02-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.415 Å) 主引用文献 On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer. Dalton Trans, 53, 2024
4XN3	Tailspike protein mutant E372A of E. coli bacteriophage HK620 in complex with hexasaccharide 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-15 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
4XNY	Crystal structure of broadly and potently neutralizing antibody VRC08C in complex with HIV-1 clade A strain Q842.d12 gp120 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160,Envelope glycoprotein gp160,Envelope glycoprotein gp160, HEAVY CHAIN OF ANTIBODY VRC08C, ... 著者 Zhou, T, Srivatsan, S, Kwong, P.D. 登録日 2015-01-16 公開日 2015-04-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection. Cell, 161, 2015
6Y5W	Crystal structure of the envelope glycoprotein complex of Andes virus in a near postfusion conformation 分子名称: Envelope polyprotein,Envelope polyprotein, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Serris, A, Rey, F.A, Guardado-Calvo, P. 登録日 2020-02-26 公開日 2020-10-14 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism. Cell, 183, 2020
4XR6	Tailspike protein double mutant D339A/E372Q of E. coli bacteriophage HK620 in complex with hexasaccharide 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-20 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
6Y9J	Crystal Structure of subtype-switched Epithelial Adhesin 1 to 9 A domain (Epa1-CBL2Epa9) from Candida glabrata in complex with beta-lactose 分子名称: CALCIUM ION, CHLORIDE ION, Epa1p, ... 著者 Hoffmann, D, Diderrich, R, Kock, M, Friederichs, S, Reithofer, V, Essen, L.-O, Moesch, H.-U. 登録日 2020-03-09 公開日 2020-07-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Functional reprogramming ofCandida glabrataepithelial adhesins: the role of conserved and variable structural motifs in ligand binding. J.Biol.Chem., 295, 2020
1O7Q	Roles of Individual Residues of Alpha-1,3 Galactosyltransferases in Substrate Binding and Catalysis 分子名称: GLYCEROL, MANGANESE (II) ION, N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE, ... 著者 Zhang, Y, Swaminathan, G.J, Deshpande, A, Natesh, R, Xie, Z, Acharya, K.R, Brew, K. 登録日 2002-11-12 公開日 2003-11-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Roles of Individual Enzyme-Substrate Interactions by Alpha-1,3-Galactosyltransferase in Catalysis and Specificity. Biochemistry, 42, 2003

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