PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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8QKT	Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment 分子名称: DNA (167-MER), Histone H2A, Histone H2B type 1-J, ... 著者 Ma, Z, Davey, C.A. 登録日 2023-09-17 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.261 Å) 主引用文献 Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment To Be Published
8QHC	Cryo-EM structure of SidH from Legionella pneumophila in complex with LubX 分子名称: E3 ubiquitin--protein ligase, Elongation factor Tu, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Sharma, R, Adams, M, Bhogaraju, S. 登録日 2023-09-07 公開日 2023-10-11 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for the toxicity of Legionella pneumophila effector SidH. Nat Commun, 14, 2023
8QFS	Cryo-EM structure of SidH from Legionella pneumophila 分子名称: Elongation factor Tu, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Sharma, R, Weis, F, Bhogaraju, S. 登録日 2023-09-04 公開日 2023-10-11 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural basis for the toxicity of Legionella pneumophila effector SidH. Nat Commun, 14, 2023
8QHM	DNA mimic Foldamer with sticky ends 分子名称: DNA mimic Foldamer 著者 Deepak, D, Loos, M, Huc, I. 登録日 2023-09-08 公開日 2023-10-11 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Enhancing the Features of DNA Mimic Foldamers for Structural Investigations. Chemistry, 30, 2024
8QPC	18mer DNA mimic Foldamer with an Aromatic linker in complex with Sac7d V26A/M29A protein 分子名称: DNA-binding protein 7b, N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide 著者 Deepak, D, Corvaglia, V, Wu, J, Huc, I. 登録日 2023-10-01 公開日 2023-11-08 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 DNA-Mimic Foldamer Recognition of a Chromosomal Protein To Be Published
1AK0	P1 NUCLEASE IN COMPLEX WITH A SUBSTRATE ANALOG 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-(DITHIO)PHOSPHATE, ... 著者 Romier, C, Suck, D. 登録日 1997-05-28 公開日 1997-12-03 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Recognition of single-stranded DNA by nuclease P1: high resolution crystal structures of complexes with substrate analogs. Proteins, 32, 1998
8QCA	CryoEM structure of a S. Cerevisiae Ski2387 complex in the closed state bound to RNA 分子名称: Antiviral helicase SKI2, Antiviral protein SKI8, RNA (5'-R(P*UP*UP*UP*U)-3'), ... 著者 Keidel, A, Koegel, A, Reichelt, P, Kowalinski, E, Schaefer, I.B, Conti, E. 登録日 2023-08-25 公開日 2023-11-15 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (2.84 Å) 主引用文献 Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly. Mol.Cell, 83, 2023
8QTC	Crystal structure of Arabidopsis thaliana 14-3-3 omega in complex with a phosphopeptide from the transcription factor BZR1. 分子名称: 14-3-3-like protein GF14 omega, COBALT (II) ION, Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Hothorn, M, Obergfell, E. 登録日 2023-10-12 公開日 2023-11-15 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Mechanistic insights into the function of 14-3-3 proteins as negative regulators of brassinosteroid signaling in Arabidopsis. Plant Cell.Physiol., 2024
8QTT	Crystal structure of a C-terminally truncated version of Arabidopsis thaliana 14-3-3 omega in complex with a phosphopeptide from the inhibitor protein BKI1. 分子名称: 1,2-ETHANEDIOL, 14-3-3-like protein GF14 omega, BRI1 kinase inhibitor 1, ... 著者 Hothorn, M, Obergfell, E. 登録日 2023-10-13 公開日 2023-11-15 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Mechanistic insights into the function of 14-3-3 proteins as negative regulators of brassinosteroid signaling in Arabidopsis. Plant Cell.Physiol., 2024
8R61	Structure of IgE delta epsilon 3-4 in complex with a kappa binding nanobody 分子名称: HMM5 IgE light chain, Immunoglobulin E VH-Ceps1-Ceps1, kappa binding nanobody 著者 Andersen, G.R, Gandini, R. 登録日 2023-11-20 公開日 2023-11-29 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The dynamics of hinge flexibility in receptor bound immunoglobulin E revealed by electron microscopy Biorxiv, 2023
8QTF	Crystal structure of a C-terminally truncated version of Arabidopsis thaliana 14-3-3 omega in complex with a phosphopeptide from the transcription factor BZR1. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 14-3-3-like protein GF14 omega, ... 著者 Hothorn, M, Obergfell, E. 登録日 2023-10-12 公開日 2023-11-22 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Mechanistic insights into the function of 14-3-3 proteins as negative regulators of brassinosteroid signaling in Arabidopsis. Plant Cell.Physiol., 2024
8QAQ	Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. Conformation 1 of omphalotin A in apolar solvents. 分子名称: TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR 著者 Ruedisser, S.H, Matabaro, E, Sonderegger, L, Guentert, P, Kuenzler, M, Gossert, A.D. 登録日 2023-08-23 公開日 2023-12-06 最終更新日 2024-01-03 実験手法 SOLUTION NMR 主引用文献 Conformations of Macrocyclic Peptides Sampled by Nuclear Magnetic Resonance: Models for Cell-Permeability. J.Am.Chem.Soc., 145, 2023
5J8L	Crystal structure of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with 1-deoxy L-tagatose, using a crystal grown in microgravity 分子名称: 1-deoxy-L-tagatose, 1-deoxy-beta-L-tagatopyranose, D-tagatose 3-epimerase, ... 著者 Yoshida, H, Yoshihara, A, Izumori, K, Kamitori, S. 登録日 2016-04-08 公開日 2016-04-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates Appl. Microbiol. Biotechnol., 100, 2016
8QAS	Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation. 分子名称: TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR 著者 Ruedisser, S.H, Matabaro, E, Sonderegger, L, Guentert, P, Kuenzler, M, Gossert, A.D. 登録日 2023-08-23 公開日 2023-12-06 最終更新日 2024-01-03 実験手法 SOLUTION NMR 主引用文献 Conformations of Macrocyclic Peptides Sampled by Nuclear Magnetic Resonance: Models for Cell-Permeability. J.Am.Chem.Soc., 145, 2023
8QSJ	Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Ritter, C, Nguyen, T.G, Kummer, E. 登録日 2023-10-10 公開日 2023-12-13 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome. Nat Commun, 14, 2023
4XLE	Tailspike protein double mutant D339N/E372A of E. coli bacteriophage HK620 in complex with hexasaccharide 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-13 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
8QBP	Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation. 分子名称: TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR 著者 Ruedisser, S.H, Matabaro, E, Sonderegger, L, Guentert, P, Kuenzler, M, Gossert, A.D. 登録日 2023-08-25 公開日 2023-12-13 最終更新日 2024-01-03 実験手法 SOLUTION NMR 主引用文献 Conformations of Macrocyclic Peptides Sampled by Nuclear Magnetic Resonance: Models for Cell-Permeability. J.Am.Chem.Soc., 145, 2023
8QF8	GH146 beta-L-arabinofuranosidase from Bacteroides thetaioatomicron in complex with beta-l-arabinofurano cyclophellitol aziridine 分子名称: (1~{S},2~{S},3~{S},4~{R})-4-azanyl-3-(hydroxymethyl)cyclopentane-1,2-diol, (1~{S},2~{S},3~{S},4~{S},5~{S})-4-(hydroxymethyl)-6-azabicyclo[3.1.0]hexane-2,3-diol, Glycosyl hydrolase, ... 著者 Borlandelli, V, Offen, W, Moroz, O.V, Nin-Hill, A, McGregor, N, Binkhorst, L, Armstrong, Z, Ishiwata, A, Artola, M, Rovira, C, Davies, G.J, Overkleeft, H. 登録日 2023-09-04 公開日 2023-12-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 beta-l- Arabino furano-cyclitol Aziridines Are Covalent Broad-Spectrum Inhibitors and Activity-Based Probes for Retaining beta-l-Arabinofuranosidases. Acs Chem.Biol., 18, 2023
6XX4	Crystal structure of the c-Src SH3 domain H122R-Q128E mutant in complex with Ni(II) at pH 7.5 co-crystallized with methyl beta-cyclodextrin 分子名称: Cyclic 2,3-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-2,6-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-3-O-methyl-alpha-D-glucopyranose, NICKEL (II) ION, Proto-oncogene tyrosine-protein kinase Src 著者 Camara-Artigas, A. 登録日 2020-01-26 公開日 2020-04-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase. J.Biol.Inorg.Chem., 25, 2020
8QB3	ADDobody zinc containing condition 分子名称: ADDobody, ZINC ION 著者 Buzas, D, Toelzer, C, Berger, I, Schaffitzel, C. 登録日 2023-08-24 公開日 2023-12-27 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders. Structure, 32, 2024
8R4E	Hybrid-1R G-quadruplex with a +(lpp) loop progression 分子名称: DNA (27-MER) 著者 Jana, J, Vianney, Y.M, Weisz, K. 登録日 2023-11-13 公開日 2023-12-27 最終更新日 2024-01-31 実験手法 SOLUTION NMR 主引用文献 Impact of loop length and duplex extensions on the design of hybrid-type G-quadruplexes. Chem.Commun.(Camb.), 60, 2024
8QPP	Bacillus subtilis MutS2-collided disome complex (stalled 70S) 分子名称: 16S rRNA (1533-MER), 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Park, E, Mackens-Kiani, T, Berhane, R, Esser, H, Erdenebat, C, Burroughs, A.M, Berninghausen, O, Aravind, L, Beckmann, R, Green, R, Buskirk, A.R. 登録日 2023-10-02 公開日 2023-12-27 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. Embo J., 43, 2024
6XKQ	Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CV07-250 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CV07-250 Heavy Chain, CV07-250 Light Chain, ... 著者 Yuan, M, Liu, H, Zhu, X, Wu, N.C, Wilson, I.A. 登録日 2020-06-26 公開日 2020-10-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 A Therapeutic Non-self-reactive SARS-CoV-2 Antibody Protects from Lung Pathology in a COVID-19 Hamster Model. Cell, 183, 2020
8QOT	Structure of the mu opioid receptor bound to the antagonist nanobody NbE 分子名称: Anti-Fab Nanobody, Mu-type opioid receptor, NabFab HC, ... 著者 Yu, J, Kumar, A, Zhang, X, Martin, C, Raia, P, Manglik, A, Ballet, S, Boland, A, Stoeber, M. 登録日 2023-09-29 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural Basis of mu-Opioid Receptor-Targeting by a Nanobody Antagonist. Biorxiv, 2023
8R6F	CryoEM structure of wheat 40S ribosomal subunit, body domain 分子名称: 30S ribosomal protein S11, chloroplastic, 30S ribosomal protein S4, ... 著者 Kravchenko, O.V, Baymukhametov, T.N, Afonina, Z.A, Vasilenko, K.S. 登録日 2023-11-22 公開日 2023-12-27 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.34 Å) 主引用文献 High-Resolution Structure and Internal Mobility of a Plant 40S Ribosomal Subunit. Int J Mol Sci, 24, 2023

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