PDB: 7404 件ウェブページステータス検索Chemie searchBIRD

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4LQ4	crystal structure of mutant ribosomal protein L1 from Methanococcus jannaschii with deletion of 8 residues from C-terminus 分子名称: 50S ribosomal protein L1, CHLORIDE ION, ISOPROPYL ALCOHOL, ... 著者 Gabdulkhakov, A.G, Tishchenko, S.V, Shkliaeva, A.A, Garber, M.B, Nikonov, S.V, Sarskikh, A.V. 登録日 2013-07-17 公開日 2014-07-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of a mutant of archaeal ribosomal protein L1 from Methanococcus jannaschii Crystallography Reports, 59, 2014
5GAH	RNC in complex with SRP with detached NG domain 分子名称: 1A9L SS, 23S rRNA, 50S ribosomal protein L10, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-26 公開日 2016-01-27 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon. Nat Commun, 7, 2016
5GAE	RNC in complex with a translocating SecYEG 分子名称: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-25 公開日 2016-01-27 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon. Nat Commun, 7, 2016
5GAG	RNC in complex with SRP-SR in the closed state 分子名称: 1A9L SS, 23S rRNA, 50S ribosomal protein L10, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-26 公開日 2016-01-27 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon. Nat Commun, 7, 2016
4D5N	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state 分子名称: CRICKET PARALYSIS VIRUS IRES RNA, EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 著者 Muhs, M, Hilal, T, Mielke, T, Skabkin, M.A, Sanbonmatsu, K.Y, Pestova, T.V, Spahn, C.M.T. 登録日 2014-11-06 公開日 2015-02-04 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires. Mol.Cell, 57, 2015
2OQA	X-ray Sequence and Crystal Structure of Luffaculin 1, a Novel Type 1 Ribosome-inactivating Protein 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Luffaculin 1, ... 著者 Hou, X, Huang, M. 登録日 2007-01-31 公開日 2007-05-29 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 X-ray sequence and crystal structure of luffaculin 1, a novel type 1 ribosome-inactivating protein Bmc Struct.Biol., 7, 2007
2KRL	The ensemble of the solution global structures of the 102-nt ribosome binding structure element of the turnip crinkle virus 3' UTR RNA 分子名称: RNA (102-MER) 著者 Zuo, X, Wang, J, Yu, P, Eyler, D, Xu, H, Starich, M, Tiede, D, Simon, A, Kasprzak, W, Schwieters, C, Shapiro, B. 登録日 2009-12-18 公開日 2011-02-09 最終更新日 2024-05-01 実験手法 SOLUTION NMR, SOLUTION SCATTERING 主引用文献 Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus. Proc.Natl.Acad.Sci.USA, 107, 2010
1QI7	THE CRYSTAL STRUCTURE AT 2.0 A OF SAPORIN SO6, A RIBOSOME INACTIVATING PROTEIN FROM SAPONARIA OFFICINALIS 分子名称: PROTEIN (N-GLYCOSIDASE), SULFATE ION 著者 Savino, C, Federici, L, Ippoliti, R, Lendaro, E, Tsernoglou, D. 登録日 1999-06-08 公開日 2000-06-05 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The crystal structure of saporin SO6 from Saponaria officinalis and its interaction with the ribosome. FEBS Lett., 470, 2000
6TQO	rrn anti-termination complex 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S4, DNA-directed RNA polymerase subunit alpha, ... 著者 Huang, Y.H, Wahl, M.C, Loll, B, Hilal, T, Said, N. 登録日 2019-12-17 公開日 2020-08-05 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure-Based Mechanisms of a Molecular RNA Polymerase/Chaperone Machine Required for Ribosome Biosynthesis. Mol.Cell, 79, 2020
7QH7	Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4 分子名称: 16S ribosomal RNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Rebelo-Guiomar, P, Pellegrino, S, Dent, K.C, Warren, A.J, Minczuk, M. 登録日 2021-12-10 公開日 2022-05-18 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 A late-stage assembly checkpoint of the human mitochondrial ribosome large subunit. Nat Commun, 13, 2022
5GAF	RNC in complex with SRP 分子名称: 1A9L SS, 23S ribosomal RNA, 50S ribosomal protein L10, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-25 公開日 2016-02-03 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon Nat Commun, 7, 2016
3LE7	Crystal structure of PD-L1 from P. dioica in complex with adenine 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Ribosome-inactivating protein PD-L1/PD-L2 著者 Ruggiero, A, Berisio, R. 登録日 2010-01-14 公開日 2010-04-14 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 The role of the glycan moiety on the structure-function relationships of PD-L1, type 1 ribosome-inactivating protein from P. dioica leaves Mol Biosyst, 6, 2010
6TQN	rrn anti-termination complex without S4 分子名称: 30S ribosomal protein S10, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Huang, Y.H, Wahl, M.C, Loll, B, Hilal, T, Said, N. 登録日 2019-12-17 公開日 2020-08-05 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure-Based Mechanisms of a Molecular RNA Polymerase/Chaperone Machine Required for Ribosome Biosynthesis. Mol.Cell, 79, 2020
6X6H	Structure of Shiga toxin 2 with a C-terminal peptide of ribosomal P stalk proteins 分子名称: 1,2-ETHANEDIOL, ACETIC ACID, CHLORIDE ION, ... 著者 Rudolph, M.J. 登録日 2020-05-28 公開日 2020-09-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Structural basis for the interaction of Shiga toxin 2a with a C-terminal peptide of ribosomal P stalk proteins. J.Biol.Chem., 295, 2020
1PN6	Domain-wise fitting of the crystal structure of T.thermophilus EF-G into the low resolution map of the release complex.Puromycin.EFG.GDPNP of E.coli 70S ribosome. 分子名称: Elongation factor G 著者 Valle, M, Zavialov, A, Sengupta, J, Rawat, U, Ehrenberg, M, Frank, J. 登録日 2003-06-12 公開日 2003-07-15 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (10.8 Å) 主引用文献 Locking and Unlocking of Ribosomal Motions Cell(Cambridge,Mass.), 114, 2003
8KIE	Structure of YchF with 50S ribosomal subunit (local map) 分子名称: 23S rRNA (partial), 50S ribosomal protein L14, 50S ribosomal protein L19, ... 著者 Yu, T, Li, X, Zeng, F. 登録日 2023-08-23 公開日 2024-08-28 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structure basis of translation regulation by YchF bound to ribosome To Be Published
1TFM	CRYSTAL STRUCTURE OF A RIBOSOME INACTIVATING PROTEIN IN ITS NATURALLY INHIBITED FORM 分子名称: 2-AMINO-4-ISOPROPYL-PTERIDINE-6-CARBOXYLIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Mishra, V, Bilgrami, S, Paramasivam, M, Yadav, S, Sharma, R.S, Kaur, P, Srinivasan, A, Babu, C.R, Singh, T.P. 登録日 2004-05-27 公開日 2004-07-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 CRYSTAL STRUCTURE OF A RIBOSOME INACTIVATING PROTEIN IN ITS NATURALLY INHIBITED FORM To be Published
6ZUO	Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage) 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Plassart, L, Shayan, R, Plisson-Chastang, C. 登録日 2020-07-23 公開日 2021-05-12 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The final step of 40S ribosomal subunit maturation is controlled by a dual key lock. Elife, 10, 2021
6ZV6	Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage) 分子名称: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Plassart, L, Shayan, R, Plisson-Chastang, C. 登録日 2020-07-24 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 The final step of 40S ribosomal subunit maturation is controlled by a dual key lock. Elife, 10, 2021
5VPP	The 70S P-site tRNA SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2018-11-07 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VPO	The 70S P-site ASL SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2018-11-07 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8G38	Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate 分子名称: 16S, 23S, 30S ribosomal protein S10, ... 著者 Bhattacharjee, S, Brown, P.Z, Frank, J. 登録日 2023-02-07 公開日 2023-12-06 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time resolution in cryo-EM using a PDMS-based microfluidic chip assembly and its application to the study of HflX-mediated ribosome recycling. Cell, 187, 2024
8G31	Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate 分子名称: 16S, 23S, 30S ribosomal protein S10, ... 著者 Bhattacharjee, S, Brown, P.Z, Frank, J. 登録日 2023-02-06 公開日 2023-12-06 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time resolution in cryo-EM using a PDMS-based microfluidic chip assembly and its application to the study of HflX-mediated ribosome recycling. Cell, 187, 2024
8G34	Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate 分子名称: 16S, 23S, 30S ribosomal protein S10, ... 著者 Bhattacharjee, S, Brown, P.Z, Frank, J. 登録日 2023-02-06 公開日 2023-12-06 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time resolution in cryo-EM using a PDMS-based microfluidic chip assembly and its application to the study of HflX-mediated ribosome recycling. Cell, 187, 2024
4V65	Structure of the E. coli ribosome in the Pre-accommodation state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Devkota, B, Caulfield, T.R, Tan, R.-Z, Harvey, S.C. 登録日 2008-08-03 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 The Structure of the E. coli Ribosome Before and After Accommodation: Implications for Proofreading To be Published

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