PDB: 1732 件ウェブページステータス検索Chemie searchBIRD

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3QF7	The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair 分子名称: MAGNESIUM ION, Mre11, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Moeckel, C, Lammens, K. 登録日 2011-01-21 公開日 2011-04-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Mre11:Rad50 Structure Shows an ATP-Dependent Molecular Clamp in DNA Double-Strand Break Repair. Cell(Cambridge,Mass.), 145, 2011
3QG5	The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair 分子名称: GLYCEROL, Mre11, rad50 著者 Lammens, K. 登録日 2011-01-24 公開日 2011-04-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 The Mre11:Rad50 Structure Shows an ATP-Dependent Molecular Clamp in DNA Double-Strand Break Repair. Cell(Cambridge,Mass.), 145, 2011
7Q2Z	Cryo-EM structure of S.cerevisiae condensin Ycg1-Brn1-DNA complex 分子名称: Condensin complex subunit 2, Condensin complex subunit 3, DNA 著者 Lee, B.-G, Rhodes, J, Lowe, J. 登録日 2021-10-26 公開日 2022-04-06 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Clamping of DNA shuts the condensin neck gate. Proc.Natl.Acad.Sci.USA, 119, 2022
6TRT	Chaetomium thermophilum UDP-Glucose Glucosyl Transferase (UGGT) double cysteine mutant S180C/T742C. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, TERBIUM(III) ION, UDP-glucose-glycoprotein glucosyltransferase-like protein, ... 著者 Roversi, P, Zitzmann, N, Ibba, R, Hensen, M. 登録日 2019-12-19 公開日 2020-01-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (4.58 Å) 主引用文献 Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase. Structure, 29, 2021
6TRF	Chaetomium thermophilum UDP-Glucose Glucosyl Transferase (UGGT) purified from cells treated with kifunensine. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, UDP-glucose-glycoprotein glucosyltransferase-like protein, ... 著者 Roversi, P, Zitzmann, N. 登録日 2019-12-18 公開日 2020-01-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (4.106 Å) 主引用文献 Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase. Structure, 29, 2021
6TS2	Truncated version of Chaetomium thermophilum UDP-Glucose Glucosyl Transferase (UGGT) lacking domain TRXL2 (417-650). 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, UDP-glucose-glycoprotein glucosyltransferase-like protein,UDP-glucose-glycoprotein glucosyltransferase-like protein, ... 著者 Roversi, P, Zitzmann, N. 登録日 2019-12-19 公開日 2020-01-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (5.74 Å) 主引用文献 Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase. Structure, 29, 2021
6TS8	Chaetomium thermophilum UDP-Glucose Glucosyl Transferase (UGGT) double cysteine mutant G177C/A786C. 分子名称: UDP-glucose-glycoprotein glucosyltransferase-like protein 著者 Roversi, P, Zitzmann, N, Ibba, R, Hensen, M, Chandran, A. 登録日 2019-12-20 公開日 2020-10-28 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (4.6 Å) 主引用文献 Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase. Structure, 29, 2021
7U1A	RFC:PCNA bound to dsDNA with a ssDNA gap of six nucleotides 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA - Primer, DNA - Template, ... 著者 Liu, X, Gaubitz, C, Pajak, J, Kelch, B.A. 登録日 2022-02-20 公開日 2022-07-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA. Elife, 11, 2022
7U19	RFC:PCNA bound to nicked DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA, MAGNESIUM ION, ... 著者 Liu, X, Gaubitz, C, Pajak, J, Kelch, B.A. 登録日 2022-02-20 公開日 2022-07-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA. Elife, 11, 2022
7U1P	RFC:PCNA bound to DNA with a ssDNA gap of five nucleotides 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA - Primer, DNA - Template, ... 著者 Liu, X, Gaubitz, C, Pajak, J, Kelch, B.A. 登録日 2022-02-21 公開日 2022-07-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA. Elife, 11, 2022
8ITE	Crystal structure of pE301R from African swine fever virus 分子名称: Uncharacterized protein E301R 著者 Zhang, H, Li, Y.H. 登録日 2023-03-22 公開日 2023-09-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication. Mbio, 14, 2023
1EM8	Crystal structure of chi and psi subunit heterodimer from DNA POL III 分子名称: DNA POLYMERASE III CHI SUBUNIT, DNA POLYMERASE III PSI SUBUNIT 著者 Gulbis, J.M, Finkelstein, J, O'Donnell, M, Kuriyan, J. 登録日 2000-03-16 公開日 2003-08-26 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of the chi:psi sub-assembly of the Escherichia coli DNA polymerase clamp-loader complex. Eur.J.Biochem., 271, 2004
8DR0	Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction 分子名称: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.42 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DQZ	Intermediate state of RFC:PCNA bound to a 3' ss/dsDNA junction 分子名称: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DQX	Open state of RFC:PCNA bound to a 3' ss/dsDNA junction 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*CP*CP*GP*AP*GP*CP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*GP*CP*CP*CP*GP*GP*A)-3'), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DR6	Closed state of RFC:PCNA bound to a nicked dsDNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (32-MER), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.39 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
5OHQ	Crystal structure of the KOW6-KOW7 domain of human DSIF 分子名称: CHLORIDE ION, SODIUM ION, Transcription elongation factor SPT5 著者 Bernecky, C, Plitzko, J.M, Cramer, P. 登録日 2017-07-17 公開日 2017-09-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.098 Å) 主引用文献 Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
5OIK	Structure of an RNA polymerase II-DSIF transcription elongation complex 分子名称: DNA (43-MER), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Bernecky, C, Plitzko, J.M, Cramer, P. 登録日 2017-07-18 公開日 2017-09-13 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
5OHO	Crystal structure of the KOWx-KOW4 domain of human DSIF 分子名称: CHLORIDE ION, GLYCEROL, Transcription elongation factor SPT5 著者 Bernecky, C, Plitzko, J.M, Cramer, P. 登録日 2017-07-17 公開日 2017-09-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.601 Å) 主引用文献 Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
6VVO	Structure of the human clamp loader (Replication Factor C, RFC) bound to the sliding clamp (Proliferating Cell Nuclear Antigen, PCNA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Gaubitz, C, Liu, X, Stone, N.P, Kelch, B.A. 登録日 2020-02-18 公開日 2020-02-26 最終更新日 2020-03-25 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism Biorxiv, 2020
8GJ3	E. coli clamp loader on primed template DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... 著者 Oakley, A.J, Xu, Z.-Q, Dixon, N.E. 登録日 2023-03-14 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
6KUF	Crystal structure of barley exohydrolaseI W434A mutant in complex with glucose. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ... 著者 Luang, S, Streltsov, V.A, Hrmova, M. 登録日 2019-09-02 公開日 2020-09-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
6L1J	Crystal structure of barley exohydrolaseI W434A mutant in complex with 4'-nitrophenyl thiolaminaritrioside 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4'-NITROPHENYL-S-(BETA-D-GLUCOPYRANOSYL)-(1-3)-(3-THIO-BETA-D-GLUCOPYRANOSYL)-(1-3)-BETA-D-GLUCOPYRANOSIDE, ACETATE ION, ... 著者 Luang, S, Streltsov, V.A, Hrmova, M. 登録日 2019-09-29 公開日 2020-09-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
6LC5	Crystal structure of barley exohydrolaseI W434F in complex with 4'-nitrophenyl thiolaminaribioside 分子名称: (2~{R},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-2,3,5-triol, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ... 著者 Luang, S, Streltsov, V.A, Hrmova, M. 登録日 2019-11-17 公開日 2020-09-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
6LBB	Crystal structure of barley exohydrolaseI W434A mutant in complex with 4I,4III,4V-S-trithiocellohexaose 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Beta-D-glucan exohydrolase isoenzyme ExoI, ... 著者 Luang, S, Streltsov, V.A, Hrmova, M. 登録日 2019-11-14 公開日 2020-09-30 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022

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