PDB: 5605 件ウェブページステータス検索Chemie searchBIRD

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7JH6	De novo designed two-domain di-Zn(II) and porphyrin-binding protein 分子名称: NONAETHYLENE GLYCOL, Two-domain di-Zn(II) and porphyrin-binding protein, ZINC ION, ... 著者 Schmidt, N, Liu, L, DeGrado, W.F. 登録日 2020-07-20 公開日 2020-12-09 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Allosteric cooperation in a de novo-designed two-domain protein. Proc.Natl.Acad.Sci.USA, 117, 2020
7MGQ	AICAR transformylase/IMP cyclohydrolase (ATIC) is essential for de novo purine biosynthesis and infection by Cryptococcus neoformans 分子名称: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase, MAGNESIUM ION 著者 Wizrah, M.S, Chua, S.M.H, Luo, Z, Manik, M.K, Pan, M, Whyte, J.M, Robertson, A.B, Kappler, U, Kobe, B, Fraser, J.A. 登録日 2021-04-13 公開日 2022-04-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 AICAR transformylase/IMP cyclohydrolase (ATIC) is essential for de novo purine biosynthesis and infection by Cryptococcus neoformans. J.Biol.Chem., 298, 2022
2MTQ	Solution Structure of a De Novo Designed Peptide that Sequesters Toxic Heavy Metals 分子名称: Designed Peptide 著者 Plegaria, J.S, Zuiderweg, E.R, Stemmler, T.L, Pecoraro, V.L. 登録日 2014-08-28 公開日 2015-04-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Apoprotein Structure and Metal Binding Characterization of a de Novo Designed Peptide, alpha 3DIV, that Sequesters Toxic Heavy Metals. Biochemistry, 54, 2015
3P6J	Crystal structure of Symfoil-4T Permutation #3: de novo designed beta-trefoil architecture with symmetric primary structure 分子名称: de novo designed beta-trefoil architecture with symmetric primary structure 著者 Blaber, M, Lee, J. 登録日 2010-10-11 公開日 2011-10-12 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Permutations study of de novo designed symmetric beta-trefoil architecture To be Published
8AH9	De novo retro-aldolase RAbetaB-16.1 分子名称: BENZOIC ACID, RAbetaB-16.1 著者 Mittl, P, Oualb Chaib, A, Hilvert, D. 登録日 2022-07-21 公開日 2023-08-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.747 Å) 主引用文献 Design and optimization of enzymatic activity in a de novo beta-barrel scaffold. Protein Sci., 31, 2022
6LLQ	Solution NMR structure of de novo Rossmann2x2 fold with most of the core mutated to valine, R2x2_VAL88 分子名称: VAL88 著者 Kobayashi, N, Sugiki, T, Fujiwara, T, Koga, R, Yamamoto, M, Kosugi, T, Koga, N. 登録日 2019-12-23 公開日 2020-12-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Robust folding of a de novo designed ideal protein even with most of the core mutated to valine. Proc.Natl.Acad.Sci.USA, 117, 2020
6W40	An enumerative algorithm for de novo design of proteins with diverse pocket structures 分子名称: DENOVO NTF2 著者 Bera, A.K, Basanta, B, Sankaran, B, Baker, D. 登録日 2020-03-09 公開日 2020-04-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proc.Natl.Acad.Sci.USA, 117, 2020
6Z0L	Het-N2 - De novo designed three-helix heterodimer with Cysteine at the N2 position of the alpha-helix 分子名称: CADMIUM ION, Cys-N2 Strand, Positive Strand, ... 著者 McEwen, A.G, Poussin-Courmontagne, P, Naudin, E.A, DeGrado, W.F, Torbeev, V. 登録日 2020-05-09 公開日 2021-03-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of alpha-Helix As Oxyanion-Binding Site. J.Am.Chem.Soc., 143, 2021
6Z0M	Het-Ncap - De novo designed three-helix heterodimer with Cysteine at the Ncap position of the alpha-helix 分子名称: Cys-Ncap strand, Positive Strand, SULFATE ION, ... 著者 McEwen, A.G, Poussin-Courmontagne, P, Naudin, E.A, DeGrado, W.F, Torbeev, V. 登録日 2020-05-09 公開日 2021-03-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of alpha-Helix As Oxyanion-Binding Site. J.Am.Chem.Soc., 143, 2021
7BEY	Het-N2-SO3- - De novo designed three-helix heterodimer with Cysteine S-sulfate at the N2 position of the alpha-helix 分子名称: 'Cys-N2-SO3-' Strand, 'Positive' Strand, SULFATE ION 著者 McEwen, A.G, Poussin-Courmontagne, P, Naudin, E.A, DeGrado, W.F, Torbeev, V. 登録日 2021-01-06 公開日 2021-03-17 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of alpha-Helix As Oxyanion-Binding Site. J.Am.Chem.Soc., 143, 2021
5L33	Crystal structure of a de novo designed protein with curved beta-sheet 分子名称: denovo NTF2 著者 Oberdorfer, G, Marcos, E, Basanta, B, Chidyausiku, T.M, Sankaran, B, Baker, D. 登録日 2016-08-03 公開日 2017-01-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Principles for designing proteins with cavities formed by curved beta sheets. Science, 355, 2017
2CW1	Solution structure of the de novo-designed lambda Cro fold protein 分子名称: SN4m 著者 Isogai, Y, Ito, Y, Ikeya, T, Shiro, Y, Ota, M. 登録日 2005-06-15 公開日 2005-12-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Design of lambda Cro fold: solution structure of a monomeric variant of the de novo protein. J.Mol.Biol., 354, 2005
5TPJ	Crystal structure of a de novo designed protein with curved beta-sheet 分子名称: denovo NTF2 著者 Basanta, B, Oberdorfer, G, Marcos, E, Chidyausiku, T.M, Sankaran, B, Baker, D. 登録日 2016-10-20 公開日 2017-01-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.101 Å) 主引用文献 Principles for designing proteins with cavities formed by curved beta sheets. Science, 355, 2017
5TRV	Crystal structure of a de novo designed protein with curved beta-sheet 分子名称: DI(HYDROXYETHYL)ETHER, denovo NTF2 著者 Basanta, B, Oberdorfer, G, Marcos, E, Chidyausiku, T.M, Sankaran, B, Baker, D. 登録日 2016-10-27 公開日 2017-01-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 Principles for designing proteins with cavities formed by curved beta sheets. Science, 355, 2017
5TS4	Crystal structure of a de novo designed protein with curved beta-sheet 分子名称: DI(HYDROXYETHYL)ETHER, denovo NTF2 著者 Basanta, B, Oberdorfer, G, Chidyausiku, T.M, Marcos, E, Pereira, J.H, Sankaran, B, Zwart, P.H, Baker, D. 登録日 2016-10-27 公開日 2017-01-25 最終更新日 2019-12-04 実験手法 X-RAY DIFFRACTION (3.005 Å) 主引用文献 Principles for designing proteins with cavities formed by curved beta sheets. Science, 355, 2017
3V1F	Crystal structure of de novo designed MID1-zinc H35E mutant 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Computational design, ... 著者 Der, B.S, Machius, M, Miley, M.J, Kuhlman, B. 登録日 2011-12-09 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.151 Å) 主引用文献 Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer. J.Am.Chem.Soc., 134, 2012
3V1C	Crystal structure of de novo designed MID1-zinc 分子名称: Computational design, MID1-zinc, L(+)-TARTARIC ACID, ... 著者 Der, B.S, Machius, M, Miley, M.J, Kuhlman, B. 登録日 2011-12-09 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.129 Å) 主引用文献 Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer. J.Am.Chem.Soc., 134, 2012
3V1D	Crystal structure of de novo designed MID1-cobalt 分子名称: COBALT (II) ION, Computational design, MID1-cobalt, ... 著者 Der, B.S, Machius, M, Miley, M.J, Kuhlman, B. 登録日 2011-12-09 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.239 Å) 主引用文献 Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer. J.Am.Chem.Soc., 134, 2012
3V1A	Crystal structure of de novo designed MID1-apo1 分子名称: Computational design, MID1-apo1 著者 Der, B.S, Machius, M, Miley, M.J, Kuhlman, B. 登録日 2011-12-09 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (0.98 Å) 主引用文献 Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer. J.Am.Chem.Soc., 134, 2012
3V1E	Crystal structure of de novo designed MID1-zinc H12E mutant 分子名称: Computational design, MID1-zinc H12E mutant, ZINC ION 著者 Der, B.S, Machius, M, Miley, M.J, Kuhlman, B. 登録日 2011-12-09 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.073 Å) 主引用文献 Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer. J.Am.Chem.Soc., 134, 2012
3V1B	Crystal structure of de novo designed MID1-apo2 分子名称: Computational design, MID1-apo2, GLYCEROL 著者 Der, B.S, Machius, M, Miley, M.J, Kuhlman, B. 登録日 2011-12-09 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.28 Å) 主引用文献 Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer. J.Am.Chem.Soc., 134, 2012
8FBK	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_65 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
8FBJ	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_60 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
8FBO	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_102 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023
8FBN	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains 分子名称: KWOCA_73 著者 Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.04 Å) 主引用文献 Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

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