3V1D

Crystal structure of de novo designed MID1-cobalt

Summary for 3V1D

Related1YZM 3V1A 3V1B 3V1C 3V1E 3V1F
DescriptorComputational design, MID1-cobalt, COBALT (II) ION, PENTAETHYLENE GLYCOL, ... (4 entities in total)
Functional Keywordshelix-turn-helix, zinc homodimerization, de novo protein, metal binding protein
Biological sourceARTIFICIAL GENE
Total number of polymer chains8
Total molecular weight45417.52
Authors
Der, B.S.,Machius, M.,Miley, M.J.,Kuhlman, B. (deposition date: 2011-12-09, release date: 2012-01-11, Last modification date: 2019-11-20)
Primary citation
Der, B.S.,Machius, M.,Miley, M.J.,Mills, J.L.,Szyperski, T.,Kuhlman, B.
Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.
J.Am.Chem.Soc., 134:375-385, 2012
PubMed: 22092237 (PDB entries with the same primary citation)
DOI: 10.1021/ja208015j
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.239 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.18550 0.3% 8.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report