PDB: 20505 件ウェブページステータス検索Chemie searchBIRD

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6XFK	Crystal structure of the type III secretion system pilotin-secretin complex InvH-InvG 分子名称: SULFATE ION, Type 3 secretion system pilotin, Type 3 secretion system secretin 著者 Majewski, D.D, Okon, M, Heinkel, F, Robb, C.S, Vuckovic, M, McIntosh, L.P, Strynadka, N.C.J. 登録日 2020-06-15 公開日 2020-09-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Characterization of the Pilotin-Secretin Complex from the Salmonella enterica Type III Secretion System Using Hybrid Structural Methods. Structure, 29, 2021
3NS8	Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Ubiquitin 著者 Zhang, D, LaRonde-LeBlanc, N, Fushman, D. 登録日 2010-07-01 公開日 2011-07-20 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.707 Å) 主引用文献 Structural and biochemical studies of the open state of Lys48-linked diubiquitin. Biochim.Biophys.Acta, 1823, 2012
4IBK	Ebola virus VP35 bound to small molecule 分子名称: 3-{(2S)-2-(7-chloro-1,3-benzodioxol-5-yl)-3-[(5-chlorothiophen-2-yl)carbonyl]-4-hydroxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl}benzoic acid, DIMETHYL SULFOXIDE, GLYCEROL, ... 著者 Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K. 登録日 2012-12-08 公開日 2014-03-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol., 426, 2014
3O02	The Crystal Structure of the Salmonella Type III Secretion System Tip Protein SipD in Complex with Chenodeoxycholate 分子名称: CHENODEOXYCHOLIC ACID, Cell invasion protein sipD, NICKEL (II) ION 著者 Chatterjee, S, Zhong, D, Nordhues, B.A, Battaile, K.P, Lovell, S, DeGuzman, R.N. 登録日 2010-07-18 公開日 2010-11-17 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The crystal structures of the Salmonella type III secretion system tip protein SipD in complex with deoxycholate and chenodeoxycholate. Protein Sci., 20, 2011
4JWL	Complexe of ARNO Sec7 domain with the protein-protein interaction inhibitor N-(4-hydroxy-2,6-dimethylphenyl)benzenesulfonamide at pH7.5 分子名称: Cytohesin-2, N-(4-hydroxy-2,6-dimethylphenyl)benzenesulfonamide 著者 Hoh, F, Rouhana, J. 登録日 2013-03-27 公開日 2013-10-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Fragment-based identification of a locus in the Sec7 domain of Arno for the design of protein-protein interaction inhibitors J.Med.Chem., 56, 2013
3OBU	Crystal structure of the Tsg101 UEV domain in complex with a HIV-1 PTAP peptide 分子名称: Gag polyprotein, Tumor susceptibility gene 101 protein 著者 Im, Y.J, Hurley, J.H. 登録日 2010-08-09 公開日 2010-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic and Functional Analysis of the ESCRT-I /HIV-1 Gag PTAP Interaction. Structure, 18, 2010
6XV0	lauric acid functionalized hexamolybdoaluminate bound to human serum albumin 分子名称: MYRISTIC ACID, Serum albumin, lauric acid functionalized hexamolybdoaluminate 著者 Bijelic, A, Dobrov, A, Roller, A, Rompel, A. 登録日 2020-01-21 公開日 2020-03-18 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Binding of a Fatty Acid-Functionalized Anderson-Type Polyoxometalate to Human Serum Albumin. Inorg.Chem., 59, 2020
4JVW	IgM C4-domain from mouse 分子名称: Ig mu chain C region secreted form 著者 Mueller, R, Graewert, A.M, Kern, T, Madl, T, Peschek, J, Sattler, M, Groll, M, Buchner, J. 登録日 2013-03-26 公開日 2013-06-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 High-resolution structures of the IgM Fc domains reveal principles of its hexamer formation. Proc.Natl.Acad.Sci.USA, 110, 2013
8U14	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 2) 分子名称: DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-30 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
4JLO	Crystal structure of Aquifex adenylate kinase R150K mutant 分子名称: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase 著者 Cho, Y.-J, Phung, L, Kern, D. 登録日 2013-03-12 公開日 2014-06-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 The energy landscape of adenylate kinase during catalysis. Nat.Struct.Mol.Biol., 22, 2015
8UQE	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 26-residue linker (RING not modeled in density) 分子名称: E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2023-10-23 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3.562 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8TXV	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 1) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-24 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8TXX	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 3) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-24 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8UQB	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization condition 1) 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, ZINC ION 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2023-10-23 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.484 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8UPF	Cryo-EM structure of the human nucleosome core particle in complex with RNF168-UbcH5c 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-10-22 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8UQA	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 12-residue linker 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, SODIUM ION, ... 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2023-10-23 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.049 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
4JPB	The structure of a ternary complex between CheA domains P4 and P5 with CheW and with an unzipped fragment of TM14, a chemoreceptor analog from Thermotoga maritima. 分子名称: Chemotaxis protein CheA, Chemotaxis protein CheW, Methyl-accepting chemotaxis protein 著者 Li, X, Bayas, C, Bilwes, A.M, Crane, B.R. 登録日 2013-03-19 公開日 2013-08-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.186 Å) 主引用文献 The 3.2 angstrom resolution structure of a receptor: CheA:CheW signaling complex defines overlapping binding sites and key residue interactions within bacterial chemosensory arrays. Biochemistry, 52, 2013
8UQ9	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 4-residue linker 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, GLYCEROL, ... 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2023-10-23 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8U13	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 1) 分子名称: DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-30 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8UQ8	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 2-residue linker 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, GLYCEROL, ... 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2023-10-23 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8UQD	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (condition 2. RING not modeled in density) 分子名称: E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2023-10-23 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3.893 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8TXW	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 2) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-24 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8UQC	Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization condition 2) 分子名称: E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, ZINC ION 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2023-10-23 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.61 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
4KQM	Crystal structure of yeast glycogen synthase E169Q mutant in complex with glucose and UDP 分子名称: 6-O-phosphono-alpha-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Gsy2p, ... 著者 Chikwana, V.M, Hurley, T.D. 登録日 2013-05-15 公開日 2013-12-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.77 Å) 主引用文献 Structural basis for 2'-phosphate incorporation into glycogen by glycogen synthase. Proc.Natl.Acad.Sci.USA, 110, 2013
3N46	Human FPPS complex with NOV_980 and zoledronic acid/MG2+ 分子名称: (2R)-1-[(benzyloxy)carbonyl]-2,3-dihydro-1H-indole-2-carboxylic acid, FARNESYL PYROPHOSPHATE SYNTHASE, MAGNESIUM ION, ... 著者 Rondeau, J.-M. 登録日 2010-05-21 公開日 2010-08-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Allosteric non-bisphosphonate FPPS inhibitors identified by fragment-based discovery. Nat.Chem.Biol., 6, 2010

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