PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

---

8TJG	Structure of Nei2 from Mycobacterium smegmatis in complex with Zn2+ 分子名称: DNA-(apurinic or apyrimidinic site) lyase, ZINC ION 著者 Warren, G, Shuman, S. 登録日 2023-07-21 公開日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Structure of Nei2 from Mycobacterium smegmatis in complex with Zn2+ To Be Published
2MW8	Solution structure of SATB1 homeodomain 分子名称: DNA-binding protein SATB1 著者 Yamasaki, K, Yamasaki, T. 登録日 2014-10-31 公開日 2015-11-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of SATB1 homeodomain To be Published
5OD6	Crystal structure of Smad3-MH1 bound to the GGCGC site. 分子名称: DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3'), Mothers against decapentaplegic homolog 3, ZINC ION 著者 Kaczmarska, Z, Marquez, J.A, Macias, M.J. 登録日 2017-07-04 公開日 2017-11-15 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors. Nat Commun, 8, 2017
6EKM	Crystal structure of mammalian Rev7 in complex with human Rev3 second binding site 分子名称: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B 著者 Huber, F, Tropia, L, Emamzadah, S, Halazonetis, T. 登録日 2017-09-26 公開日 2018-10-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Crystal structure of mammalian Rev7 in complex with human Rev3 To Be Published
6UML	Structural Basis for Thalidomide Teratogenicity Revealed by the Cereblon-DDB1-SALL4-Pomalidomide Complex 分子名称: DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ... 著者 Clayton, T.L, Matyskiela, M.E, Pagarigan, B.E, Tran, E.T, Chamberlain, P.P. 登録日 2019-10-09 公開日 2020-04-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.58 Å) 主引用文献 Crystal structure of the SALL4-pomalidomide-cereblon-DDB1 complex. Nat.Struct.Mol.Biol., 27, 2020
7S3C	Crystal structure of intact U2AF65 RRM-region bound to AdML-A5 oligonucleotide 分子名称: DNA/RNA (5'-R(P*UP*UP*(UD)P*AP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit 著者 Glasser, E, Jenkins, J.L, Kielkopf, C.L. 登録日 2021-09-05 公開日 2022-05-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
7S3A	Crystal structure of intact U2AF65 RRM-region bound to AdML-C5 oligonucleotide 分子名称: DNA/RNA (5'-R(P*UP*UP*(UD)P*CP*U)-D(P*(BRU))-R(P*CP*C)-3'), SODIUM ION, Splicing factor U2AF 65 kDa subunit 著者 Jenkins, J.L, Henderson, S, Kielkopf, C.L. 登録日 2021-09-05 公開日 2022-05-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
4KA4	Crystal structure of a proteolytically defined Zbeta domain of human DAI (ZBP1, DLM-1) 分子名称: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), Z-DNA-binding protein 1 著者 Athanasiadis, A, de Rosa, M, De Sanctis, D. 登録日 2013-04-22 公開日 2013-05-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of a proteolytically defined Zbeta domain of human DAI (ZBP1, DLM-1) To be Published
2KV6	Tetrapeptide KWKK conjugated to oligonucleotide duplex by a trimethylene tether 分子名称: 5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3', KWKK Tetrapeptide 著者 Huang, H, Kozekov, I.D, Kozekova, A, Rizzo, C.J, McCullough, A, LLoyd, R.S, Stone, M.P. 登録日 2010-03-08 公開日 2010-07-21 最終更新日 2011-07-13 実験手法 SOLUTION NMR 主引用文献 Minor Groove Orientation of the KWKK Peptide Tethered via the N-Terminal Amine to the Acrolein-Derived 1,N(2)-gamma-Hydroxypropanodeoxyguanosine Lesion with a Trimethylene Linkage . Biochemistry, 49, 2010
7O1E	Crystal structure of PCNA from Chaetomium thermophilum 分子名称: Proliferating cell nuclear antigen 著者 Alphey, M.A, MacNeill, S, Yang, D. 登録日 2021-03-29 公開日 2022-04-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
7O1F	PCNA from Chaetomium thermophilum in complex with PolD4 PIP peptide 分子名称: Peptide fragment from PolD4, Proliferating cell nuclear antigen, SODIUM ION 著者 Alphey, M.A, MacNeill, S, Yang, D. 登録日 2021-03-29 公開日 2022-04-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
3JA8	Cryo-EM structure of the MCM2-7 double hexamer 分子名称: ADENOSINE-5'-DIPHOSPHATE, Minichromosome Maintenance 2, Minichromosome Maintenance 3, ... 著者 Li, N, Zhai, Y, Zhang, Y, Li, W, Yang, M, Lei, J, Tye, B.K, Gao, N. 登録日 2015-05-09 公開日 2015-08-05 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure of the eukaryotic MCM complex at 3.8 angstrom Nature, 524, 2015
2KLO	Structure of the Cdt1 C-terminal domain 分子名称: DNA replication factor Cdt1 著者 Khayrutdinov, B.I, Bae, W.J, Yun, Y.M, Tsuyama, T, Kim, J.J, Hwang, E, Ryu, K.-S, Cheong, H.-K, Cheong, C, Karplus, P.A, Guntert, P, Tada, S, Jeon, Y.H, Cho, Y. 登録日 2009-07-06 公開日 2009-10-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of the Cdt1 C-terminal domain: Conservation of the winged helix fold in replication licensing factors Protein Sci., 18, 2009
2CKC	Solution structures of the BRK domains of the human Chromo Helicase Domain 7 and 8, reveals structural similarity with GYF domain suggesting a role in protein interaction 分子名称: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7 著者 Ab, E, de Jong, R.N, Diercks, T, Xiaoyun, J, Daniels, M, Kaptein, R, Folkers, G.E. 登録日 2006-04-14 公開日 2007-05-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution Structures of the Brk Domains of the Human Chromo Helicase Domain 7 and 8, Reveals Structural Similarity with Gyf Domain Suggesting a Role in Protein Interaction To be Published
8TK7	Myxococcus xanthus EncA protein shell with compartmentalized SNAP-tag cargo protein 分子名称: Methylated-DNA--protein-cysteine methyltransferase, Type 1 encapsulin shell protein EncA 著者 Andreas, M.P, Kwon, S, Giessen, T.W. 登録日 2023-07-25 公開日 2023-09-13 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (2.53 Å) 主引用文献 Structure and heterogeneity of a highly cargo-loaded encapsulin shell. J.Struct.Biol., 215, 2023
8K87	Dimer structure of procaryotic Ago 分子名称: DNA (41-mer), MAGNESIUM ION, Piwi domain protein, ... 著者 Gao, X, Sun, D, Cui, S, Wang, Y. 登録日 2023-07-29 公開日 2024-07-03 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural Basis of prokaryotic Argonaute System To Be Published
8EVG	162bp CX3CR1 nucleosome (further classified with better nucleosome end) 分子名称: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Tengfei, L, Ruifang, G, Yawen, B. 登録日 2022-10-20 公開日 2023-11-01 実験手法 ELECTRON MICROSCOPY (2.75 Å) 主引用文献 Structural basis of cooperative targeting of the CX3CR1 nucleosome To Be Published
8TNP	Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40 分子名称: DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, Protein cereblon, ... 著者 Roy Burman, S.S, Hunkeler, M, Fischer, E.S. 登録日 2023-08-02 公開日 2024-03-13 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Continuous evolution of compact protein degradation tags regulated by selective molecular glues. Science, 383, 2024
5MKW	Crystal structure of the human ZRANB3 HNH domain 分子名称: DNA annealing helicase and endonuclease ZRANB3, GLYCEROL, ZINC ION 著者 Ariza, A. 登録日 2016-12-05 公開日 2017-06-28 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into the function of ZRANB3 in replication stress response. Nat Commun, 8, 2017
6H0G	Structure of the DDB1-CRBN-pomalidomide complex bound to ZNF692(ZF4) 分子名称: DNA damage-binding protein 1,DNA damage-binding protein 1,DNA damage-binding protein 1,DDB1 (DNA damage binding protein 1),DNA damage-binding protein 1,DNA damage-binding protein 1,DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ... 著者 Bunker, R.D, Petzold, G, Thoma, N.H. 登録日 2018-07-09 公開日 2018-11-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (4.25 Å) 主引用文献 Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN. Science, 362, 2018
5WCE	Caulobacter crescentus pol III beta 分子名称: DNA polymerase III subunit beta 著者 Oakley, A.J. 登録日 2017-06-30 公開日 2017-07-26 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of Pol III beta from Caulobacter crescentus To Be Published
6A1O	Crystal structures of disordered Z-type helices 分子名称: DNA (5'-D(P*CP*A)-3'), DNA (5'-D(P*CP*AP*CP*A)-3'), DNA (5'-D(P*TP*G)-3'), ... 著者 Karthik, S, Mandal, P.K, Thirugnanasambandam, A, Gautham, N. 登録日 2018-06-07 公開日 2019-01-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Crystal structures of disordered Z-type helices. Nucleosides Nucleotides Nucleic Acids, 38, 2019
6A1Q	Crystal structures of disordered Z-type helices 分子名称: DNA (5'-D(P*CP*AP*CP*A)-3'), DNA (5'-D(P*TP*GP*TP*G)-3') 著者 Karthik, S, Mandal, P.K, Thirugnanasambandam, A, Gautham, N. 登録日 2018-06-07 公開日 2019-01-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Crystal structures of disordered Z-type helices. Nucleosides Nucleotides Nucleic Acids, 38, 2019
6MC6	Crystal structure of PprA filament from Deinococcus radiodurans 分子名称: DNA repair protein PprA 著者 Szabla, R, Junop, M.S, Wood, K. 登録日 2018-08-30 公開日 2018-09-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.747 Å) 主引用文献 Crystal structure of PprA from Deinococcus radiodurans To Be Published
4XZQ	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis 分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... 著者 Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B. 登録日 2015-02-04 公開日 2015-10-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Mol.Cell.Biol., 35, 2015

<633634635636637638639640641642643644645646647648>