PDB: 183105 件ウェブページステータス検索Chemie searchBIRD

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7Y82	CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA complex bound to self RNA target 分子名称: MAGNESIUM ION, RAMP superfamily protein, Self RNA target, ... 著者 Zhang, J.T, Cui, N, Huang, H.D, Jia, N. 登録日 2022-06-22 公開日 2022-12-14 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase. Nat Commun, 13, 2022
7Y83	CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA in complex with TPR-CHAT protease bound to non-self RNA target 分子名称: CHAT domain protein, MAGNESIUM ION, RAMP superfamily protein, ... 著者 Zhang, J.T, Cui, N, Huang, H.D, Jia, N. 登録日 2022-06-22 公開日 2022-12-14 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase. Nat Commun, 13, 2022
7Y84	CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA in complex with TPR-CHAT protease 分子名称: CHAT domain protein, MAGNESIUM ION, RAMP superfamily protein, ... 著者 Zhang, J.T, Cui, N, Huang, H.D, Jia, N. 登録日 2022-06-22 公開日 2022-12-14 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (2.61 Å) 主引用文献 Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase. Nat Commun, 13, 2022
3HFO	Crystal Structure of an Hfq protein from Synechocystis sp. 分子名称: Ssr3341 protein 著者 Boggild, A, Overgaard, M, Valentin-Hansen, P, Brodersen, D.E. 登録日 2009-05-12 公開日 2009-07-14 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties. Febs J., 276, 2009
3UCA	Crystal structure of isoprenoid synthase (target EFI-501974) from clostridium perfringens 分子名称: Geranyltranstransferase 著者 Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Poulter, C.D, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI) 登録日 2011-10-26 公開日 2011-11-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily. Proc.Natl.Acad.Sci.USA, 110, 2013
7QTV	Beryllium fluoride form of the Na+,K+-ATPase (E2-BeFx) 分子名称: 1-O-decanoyl-beta-D-tagatofuranosyl beta-D-allopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Fruergaard, M.U, Dach, I, Andersen, J.L, Ozol, M, Shahsavar, A, Quistgaard, E.M, Poulsen, H, Fedosova, N.U, Nissen, P. 登録日 2022-01-16 公開日 2022-11-23 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (4.05 Å) 主引用文献 The Na + ,K + -ATPase in complex with beryllium fluoride mimics an ATPase phosphorylated state. J.Biol.Chem., 298, 2022
2XHZ	Probing the active site of the sugar isomerase domain from E. coli arabinose-5-phosphate isomerase via X-ray crystallography 分子名称: ARABINOSE 5-PHOSPHATE ISOMERASE 著者 Gourlay, L.J, Sommaruga, S, Nardini, M, Sperandeo, P, Deho, G, Polissi, A, Bolognesi, M. 登録日 2010-06-24 公開日 2011-01-26 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Probing the Active Site of the Sugar Isomerase Domain from E. Coli Arabinose-5-Phosphate Isomerase Via X-Ray Crystallography. Protein Sci., 19, 2010
3UKI	Crystal structure of reduced OxyR from Porphyromonas gingivalis 分子名称: OxyR 著者 Svintradze, D.V, Wright, H.T, Collazo-Santiago, E.A, Lewis, J.P. 登録日 2011-11-09 公開日 2013-07-31 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (4.15 Å) 主引用文献 Structures of the Porphyromonas gingivalis OxyR regulatory domain explain differences in expression of the OxyR regulon in Escherichia coli and P. gingivalis. Acta Crystallogr.,Sect.D, 69, 2013
6K0R	Ruvbl1-Ruvbl2 with truncated domain II in complex with phosphorylated Cordycepin 分子名称: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Zhang, W, Chen, L, Li, W, Ju, D, Huang, N, Zhang, E. 登録日 2019-05-07 公開日 2020-05-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.502 Å) 主引用文献 Chemical perturbations reveal that RUVBL2 regulates the circadian phase in mammals. Sci Transl Med, 12, 2020
4V7K	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E. 登録日 2009-11-02 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell(Cambridge,Mass.), 139, 2009
2Y41	Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - complex with IPM and MN 分子名称: 3-ISOPROPYLMALATE DEHYDROGENASE, 3-ISOPROPYLMALIC ACID, MANGANESE (II) ION 著者 Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M. 登録日 2011-01-04 公開日 2011-01-19 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase. Mol.Biosyst., 7, 2011
4V6A	Structure of EF-P bound to the 70S ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Stanley, R.E, Blaha, G. 登録日 2009-06-15 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome. Science, 325, 2009
3UR0	Crystal structures of murine norovirus RNA-dependent RNA polymerase in complex with Suramin 分子名称: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID, RNA-dependent RNA polymerase, SULFATE ION 著者 Milani, M, Mastrangelo, E, Bolognesi, M. 登録日 2011-11-21 公開日 2012-05-02 最終更新日 2012-05-23 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structure-Based Inhibition of Norovirus RNA-Dependent RNA Polymerases. J.Mol.Biol., 419, 2012
2Y42	Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - complex with NADH and Mn 分子名称: 3-ISOPROPYLMALATE DEHYDROGENASE, BICINE, MANGANESE (II) ION, ... 著者 Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M. 登録日 2011-01-04 公開日 2011-01-19 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase. Mol.Biosyst., 7, 2011
2Y3Z	Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - apo enzyme 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-ISOPROPYLMALATE DEHYDROGENASE, GLYCEROL, ... 著者 Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M. 登録日 2011-01-04 公開日 2011-01-19 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase. Mol.Biosyst., 7, 2011
2Y40	Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - complex with Mn 分子名称: 3-ISOPROPYLMALATE DEHYDROGENASE, MANGANESE (II) ION 著者 Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M. 登録日 2011-01-04 公開日 2011-01-19 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase. Mol.Biosyst., 7, 2011
5CRO	REFINED STRUCTURE OF CRO REPRESSOR PROTEIN FROM BACTERIOPHAGE LAMBDA 分子名称: CRO REPRESSOR PROTEIN, PHOSPHATE ION 著者 Ohlendorf, D.H, Tronrud, D.E, Matthews, B.W. 登録日 1998-04-17 公開日 1998-06-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Refined structure of Cro repressor protein from bacteriophage lambda suggests both flexibility and plasticity. J.Mol.Biol., 280, 1998
8EEE	Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ104-d in complex with ZIKV E glycoprotein 分子名称: Envelope protein E, SULFATE ION, rhMZ104-D antibody heavy chain, ... 著者 Sankhala, R.S, Joyce, M.G. 登録日 2022-09-07 公開日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.819 Å) 主引用文献 Zika-specific neutralizing antibodies targeting inter-dimer envelope epitopes. Cell Rep, 42, 2023
8S5N	RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-24 公開日 2024-04-10 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
9JDW	CRYSTAL STRUCTURE OF HUMAN L-ARGININE:GLYCINE AMIDINOTRANSFERASE IN COMPLEX WITH ALPHA-AMINO BUTYRIC ACID 分子名称: ALPHA-AMINOBUTYRIC ACID, PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE) 著者 Fritsche, E, Humm, A, Huber, R. 登録日 1998-10-12 公開日 1999-02-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study. J.Biol.Chem., 274, 1999
8S55	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S51	RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8SBH	YeiE effector binding domain from E. coli 分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ... 著者 Momany, C, Nune, M, Brondani, J.C, Afful, D, Neidle, E. 登録日 2023-04-03 公開日 2024-04-17 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 FinR, a LysR-type transcriptional regulator involved in sulfur homeostasis with homologs in diverse microorganisms To Be Published
8S52	RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8RTZ	The structure of E. coli penicillin binding protein 3 (PBP3) in complex with a bicyclic peptide inhibitor 分子名称: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one, Bicyclic peptide inhibitor, Peptidoglycan D,D-transpeptidase FtsI 著者 Newman, H, Rowland, C.E, Dods, R, Lewis, N, Stanway, S.J, Bellini, D, Beswick, P. 登録日 2024-01-29 公開日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Discovery and chemical optimisation of a Potent, Bi-cyclic (Bicycle) Antimicrobial Inhibitor of Escherichia coli PBP3 To Be Published

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