Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7SQC
DownloadVisualize
BU of 7sqc by Molmil
Ciliary C1 central pair apparatus isolated from Chlamydomonas reinhardtii
分子名称: ADENOSINE-5'-DIPHOSPHATE, CPC1, Calmodulin, ...
著者Gui, M, Wang, X, Dutcher, S.K, Brown, A, Zhang, R.
登録日2021-11-05
公開日2022-04-13
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Ciliary central apparatus structure reveals mechanisms of microtubule patterning.
Nat.Struct.Mol.Biol., 29, 2022
5VYC
DownloadVisualize
BU of 5vyc by Molmil
Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
著者Lomakin, I.B, Stolboushkina, E.A, Vaidya, A.T, Garber, M.B, Dmitriev, S.E, Steitz, T.A.
登録日2017-05-24
公開日2017-07-19
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (6 Å)
主引用文献Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1.
Cell Rep, 20, 2017
4NH1
DownloadVisualize
BU of 4nh1 by Molmil
Crystal structure of a heterotetrameric CK2 holoenzyme complex carrying the Andante-mutation in CK2beta and consistent with proposed models of autoinhibition and trans-autophosphorylation
分子名称: Casein kinase II subunit alpha, Casein kinase II subunit beta, GLYCEROL, ...
著者Schnitzler, A, Issinger, O.-G, Niefind, K.
登録日2013-11-04
公開日2014-03-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献The Protein Kinase CK2(Andante) Holoenzyme Structure Supports Proposed Models of Autoregulation and Trans-Autophosphorylation
J.Mol.Biol., 426, 2014
3LX6
DownloadVisualize
BU of 3lx6 by Molmil
Crystal structure of putative dna cytosine methylase from shigella flexneri 2a str. 2457T
分子名称: Cytosine-specific methyltransferase
著者Ramagopal, U.A, Toro, R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-02-24
公開日2010-03-23
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Crystal structure of putative dna cytosine methylase from shigella flexneri 2a str. 2457T
To be Published
3ME5
DownloadVisualize
BU of 3me5 by Molmil
Crystal structure of putative dna cytosine methylase from shigella flexneri 2a str. 2457T
分子名称: Cytosine-specific methyltransferase
著者Ramagopal, U.A, Malashkevich, V.N, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-03-31
公開日2010-04-21
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of putative dna cytosine methylase from shigella flexneri 2a str. 2457T
To be Published
3MHT
DownloadVisualize
BU of 3mht by Molmil
TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCY
分子名称: DNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE (E.C.2.1.1.73)), ...
著者O'Gara, M, Klimasauskas, S, Roberts, R.J, Cheng, X.
登録日1996-07-24
公開日1997-01-27
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes.
J.Mol.Biol., 261, 1996
4MHT
DownloadVisualize
BU of 4mht by Molmil
TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCY
分子名称: DNA (5'-D(*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE (E.C.2.1.1.73)), ...
著者Cheng, X.
登録日1996-07-24
公開日1997-01-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes.
J.Mol.Biol., 261, 1996
5UKD
DownloadVisualize
BU of 5ukd by Molmil
PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TRANSFER TRANSITION STATE ANALOG
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CYTIDINE-5'-MONOPHOSPHATE, ...
著者Schlichting, I, Reinstein, J.
登録日1999-04-18
公開日1999-08-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献pH influences fluoride coordination number of the AlFx phosphoryl transfer transition state analog.
Nat.Struct.Biol., 6, 1999
5WLC
DownloadVisualize
BU of 5wlc by Molmil
The complete structure of the small subunit processome
分子名称: 18S pre-rRNA, 5' ETS, Bms1, ...
著者Barandun, J, Chaker-Margot, M, Hunziker, M, Klinge, S.
登録日2017-07-26
公開日2017-09-27
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献The complete structure of the small-subunit processome.
Nat. Struct. Mol. Biol., 24, 2017
5WYJ
DownloadVisualize
BU of 5wyj by Molmil
Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)
分子名称: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 40S ribosomal protein S1-A, ...
著者Ye, K, Zhu, X, Sun, Q.
登録日2017-01-13
公開日2017-03-29
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (8.7 Å)
主引用文献Molecular architecture of the 90S small subunit pre-ribosome.
Elife, 6, 2017
7SX3
DownloadVisualize
BU of 7sx3 by Molmil
Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 1/2
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kschonsak, M, Chua, H.C, Weidling, C, Chakouri, N, Noland, C.L, Schott, K, Chang, T, Tam, C, Patel, N, Arthur, C.P, Leitner, A, Ben-Johny, M, Ciferri, C, Pless, S.A, Payandeh, J.
登録日2021-11-22
公開日2021-12-29
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural architecture of the human NALCN channelosome.
Nature, 603, 2022
7SX4
DownloadVisualize
BU of 7sx4 by Molmil
Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 2/2
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kschonsak, M, Chua, H.C, Weidling, C, Chakouri, N, Noland, C.L, Schott, K, Chang, T, Tam, C, Patel, N, Arthur, C.P, Leitner, A, Ben-Johny, M, Ciferri, C, Pless, S.A, Payandeh, J.
登録日2021-11-22
公開日2021-12-29
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural architecture of the human NALCN channelosome.
Nature, 603, 2022
4NP6
DownloadVisualize
BU of 4np6 by Molmil
Crystal Structure of Adenylate Kinase from Vibrio cholerae O1 biovar eltor
分子名称: Adenylate kinase
著者Kim, Y, Zhou, M, Grimshaw, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2013-11-20
公開日2013-12-18
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献Crystal Structure of Adenylate Kinase from Vibrio cholerae O1 biovar eltor
To be Published
3L0P
DownloadVisualize
BU of 3l0p by Molmil
Crystal structures of Iron containing Adenylate kinase from Desulfovibrio gigas
分子名称: Adenylate kinase, FE (III) ION, GLYCEROL
著者Mukhopadhyay, A, Trincao, J, Romao, M.J.
登録日2009-12-10
公開日2010-12-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of the zinc-, cobalt-, and iron-containing adenylate kinase from Desulfovibrio gigas: a novel metal-containing adenylate kinase from Gram-negative bacteria
J.Biol.Inorg.Chem., 16, 2011
3M9S
DownloadVisualize
BU of 3m9s by Molmil
Crystal structure of respiratory complex I from Thermus thermophilus
分子名称: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
著者Efremov, R.G, Baradaran, R, Sazanov, L.A.
登録日2010-03-22
公開日2010-05-26
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献The architecture of respiratory complex I
Nature, 465, 2010
1VAX
DownloadVisualize
BU of 1vax by Molmil
Crystal Structure of Uricase from Arthrobacter globiformis
分子名称: Uric acid oxidase
著者Hossain, M.T, Suzuki, K, Yamamoto, T, Imamura, S, Sekiguchi, T, Takenaka, A.
登録日2004-02-19
公開日2005-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystal Structure of Uricase from Arthrobacter globiformis
To be Published
1UKE
DownloadVisualize
BU of 1uke by Molmil
UMP/CMP KINASE FROM SLIME MOLD
分子名称: MAGNESIUM ION, P1-(ADENOSINE-5'-P5-(URIDINE-5')PENTAPHOSPHATE, URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE
著者Scheffzek, K, Kliche, W, Wiesmueller, L, Reinstein, J.
登録日1998-01-07
公開日1998-04-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the complex of UMP/CMP kinase from Dictyostelium discoideum and the bisubstrate inhibitor P1-(5'-adenosyl) P5-(5'-uridyl) pentaphosphate (UP5A) and Mg2+ at 2.2 A: implications for water-mediated specificity.
Biochemistry, 35, 1996
1UKZ
DownloadVisualize
BU of 1ukz by Molmil
SUBSTRATE SPECIFICITY AND ASSEMBLY OF CATALYTIC CENTER DERIVED FROM TWO STRUCTURES OF LIGATED URIDYLATE KINASE
分子名称: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, URIDYLATE KINASE
著者Mueller-Dieckmann, H.-J, Schulz, G.E.
登録日1994-07-13
公開日1995-01-26
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Substrate specificity and assembly of the catalytic center derived from two structures of ligated uridylate kinase.
J.Mol.Biol., 246, 1995
3NDP
DownloadVisualize
BU of 3ndp by Molmil
Crystal structure of human AK4(L171P)
分子名称: Adenylate kinase isoenzyme 4, SULFATE ION
著者Liu, R, Wang, Y, Wei, Z, Gong, W.
登録日2010-06-07
公開日2010-06-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of human adenylate kinase 4 (L171P) suggests the role of hinge region in protein domain motion
Biochem.Biophys.Res.Commun., 379, 2009
5XJ5
DownloadVisualize
BU of 5xj5 by Molmil
Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the monoacylglycerol form
分子名称: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, GLYCINE, Glycerol-3-phosphate acyltransferase, ...
著者Li, Z, Li, D.
登録日2017-04-30
公開日2017-12-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.481 Å)
主引用文献Structural insights into the committed step of bacterial phospholipid biosynthesis.
Nat Commun, 8, 2017
5X6I
DownloadVisualize
BU of 5x6i by Molmil
Crystal structure of B. subtilis adenylate kinase variant
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ...
著者Moon, S, Bae, E.
登録日2017-02-22
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability.
Struct Dyn., 6, 2019
9NPX
DownloadVisualize
BU of 9npx by Molmil
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
分子名称: 18S ribosomal RNA, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
著者Gen, R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
登録日2025-03-11
公開日2025-06-11
実験手法ELECTRON MICROSCOPY (2.1 Å)
主引用文献SARS-CoV-2 nsp1 mediates broad inhibition of translation in mammals.
Cell Rep, 44, 2025
8UKB
DownloadVisualize
BU of 8ukb by Molmil
In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 18S rRNA, 28S rRNA, ...
著者Wei, Z, Yong, X.
登録日2023-10-12
公開日2024-11-20
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献In situ human hibernating rotated state 80S ribosome
To Be Published
3HPQ
DownloadVisualize
BU of 3hpq by Molmil
Crystal structure of wild-type adenylate kinase from E. coli, in complex with Ap5A
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
著者Hilser, V.J, Travis, T.P, Bolen, D.W.
登録日2009-06-04
公開日2009-11-03
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins.
Proc.Natl.Acad.Sci.USA, 106, 2009
8G4E
DownloadVisualize
BU of 8g4e by Molmil
Green Fluorescence Protein imaged on a cryo-EM imaging scaffold
分子名称: RCG-10 - Cryo-EM imaging scaffold subunit B fused to DARPin, Superfolder Green Fluorescent Protein
著者Castells-Graells, R, Sawaya, M.R, Yeates, T.O.
登録日2023-02-09
公開日2023-08-09
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献Cryo-EM structure determination of small therapeutic protein targets at 3 angstrom -resolution using a rigid imaging scaffold.
Proc.Natl.Acad.Sci.USA, 120, 2023

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon