PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2FKI	NMR Structure of Protein yjbR from Escherichia coli; Northeast Structural Genomics Consortium Target ER226 分子名称: Protein yjbR 著者 Singarapu, K.K, Liu, G, Xiao, R, Shetty, K.G, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG) 登録日 2006-01-04 公開日 2006-02-28 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif. Proteins, 67, 2007
2CW7	Crystal structure of intein homing endonuclease II 分子名称: Endonuclease PI-PkoII, SULFATE ION 著者 Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y. 登録日 2005-06-17 公開日 2006-04-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1 Proteins, 63, 2006
3QXR	Crystal structure of the brominated CKIT-1 proto-oncogene promoter quadruplex DNA 分子名称: 5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*(BRU)P*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3', MAGNESIUM ION, POTASSIUM ION 著者 Wei, D, Parkinson, G.N, Neidle, S. 登録日 2011-03-02 公開日 2012-01-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Crystal structure of a c-kit promoter quadruplex reveals the structural role of metal ions and water molecules in maintaining loop conformation. Nucleic Acids Res., 40, 2012
1J8B	Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function 分子名称: YbaB 著者 Lim, K, Tempcyzk, A, Toedt, J, Parsons, J.F, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F) 登録日 2001-05-21 公開日 2003-01-14 最終更新日 2012-09-26 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR Proteins, 50, 2003
3IR2	Crystal structure of the APOBEC3G catalytic domain 分子名称: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3G, MAGNESIUM ION, ... 著者 Shandilya, S.M.D, Schiffer, C.A. 登録日 2009-08-21 公開日 2010-01-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Crystal Structure of the APOBEC3G Catalytic Domain Reveals Potential Oligomerization Interfaces. Structure, 18, 2010
1XWY	Crystal structure of tatD deoxyribonuclease from Escherichia coli K12 at 2.0 A resolution 分子名称: Deoxyribonuclease tatD, ZINC ION 著者 Malashkevich, V.N, Xiang, D.F, Raushel, F.M, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2004-11-02 公開日 2005-01-25 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of tatD DNase from Escherichia coli at 2.0 A resolution To be Published
2A3Z	Ternary complex of the WH2 domain of WASP with Actin-DNAse I 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... 著者 Chereau, D, Kerff, F, Dominguez, R. 登録日 2005-06-27 公開日 2005-11-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.078 Å) 主引用文献 Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
2A41	Ternary complex of the WH2 Domain of WIP with Actin-DNAse I 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ... 著者 Chereau, D, Kerff, F, Dominguez, R. 登録日 2005-06-27 公開日 2005-11-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
1NVY	Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 分子名称: STRONTIUM ION, d(TCGGTACCGA)4 著者 Cardin, C.J, Thorpe, J.H, Gale, B.C, Teixeira, S.C.M. 登録日 2003-02-05 公開日 2003-02-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Strontium, a MAD taerget for the DNA Holliday junction To be published
6JZB	Structural characterization of DnaJ from Streptococcus pneumonia presents a new tetramer of Hsp40 family 分子名称: Chaperone protein DnaJ, ZINC ION 著者 Zhu, M, Zhu, Z.L. 登録日 2019-04-30 公開日 2020-11-04 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.754 Å) 主引用文献 Structural insights into the formation of oligomeric state by a type I Hsp40 chaperone. Biochimie, 176, 2020
1IFY	Solution Structure of the Internal UBA Domain of HHR23A 分子名称: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A 著者 Mueller, T.D, Feigon, J. 登録日 2001-04-13 公開日 2002-07-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structures of UBA domains reveal a conserved hydrophobic surface for protein-protein interactions. J.Mol.Biol., 319, 2002
2AQY	(3+1) assembly of three human telomeric DNA repeats into an asymmetrical dimeric G-quadruplex 分子名称: 5'-D(*GP*(OIP)P*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*T)-3', 5'-D(*TP*AP*GP*GP*GP*(DU))-3' 著者 Zhang, N, Phan, A.T, Patel, D.J. 登録日 2005-08-18 公開日 2006-03-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 (3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex J.Am.Chem.Soc., 127, 2005
2IX0	RNase II 分子名称: CALCIUM ION, CYTIDINE-5'-MONOPHOSPHATE, EXORIBONUCLEASE 2, ... 著者 Frazao, C, Mcvey, C.E, Amblar, M, Barbas, A, Vonrhein, C, Arraiano, C.M, Carrondo, M.A. 登録日 2006-07-05 公開日 2006-10-05 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.44 Å) 主引用文献 Unravelling the Dynamics of RNA Degradation by Ribonuclease II and its RNA-Bound Complex Nature, 7, 2006
2IX1	RNase II D209N mutant 分子名称: 5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP *AP*AP*A)-3', EXORIBONUCLEASE 2, MAGNESIUM ION 著者 Frazao, C, McVey, C.E, Amblar, M, Barbas, A, Vonrhein, C, Arraiano, C.M, Carrondo, M.A. 登録日 2006-07-05 公開日 2006-10-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.74 Å) 主引用文献 Unravelling the Dynamics of RNA Degradation by Ribonuclease II and its RNA-Bound Complex Nature, 443, 2006
1R3G	1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues 分子名称: 5'-D(*GP*CP*GP*TP*AP*(GMU)P*AP*CP*GP*C)-3'), MAGNESIUM ION 著者 Prakash, T.P, Puschl, A, Lesnik, E, Tereshko, V, Egli, M, Manoharan, M. 登録日 2003-10-01 公開日 2003-10-21 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 2'-O-[2-(Guanidinium)ethyl]-Modified Oligonucleotides: Stabilizing Effect on Duplex and Triplex Structures. Org.Lett., 6, 2004
1ZZJ	Structure of the third KH domain of hnRNP K in complex with 15-mer ssDNA 分子名称: 5'-D(*TP*TP*CP*CP*CP*CP*TP*CP*CP*CP*CP*AP*TP*TP*T)-3', Heterogeneous nuclear ribonucleoprotein K 著者 Backe, P.H, Messias, A.C, Ravelli, R.B, Sattler, M, Cusack, S. 登録日 2005-06-14 公開日 2005-08-09 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids STRUCTURE, 13, 2005
2HN7	HLA-A*1101 in complex with HBV peptide homologue 分子名称: Beta-2-microglobulin, DNA polymerase PEPTIDE HOMOLOGUE, HLA class I histocompatibility antigen, ... 著者 Blicher, T. 登録日 2006-07-12 公開日 2006-11-28 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure of HLA-A*1101 in complex with a hepatitis B peptide homologue. Acta Crystallogr.,Sect.F, 62, 2006
1IFI	MOLECULAR MODELS AND STRUCTURAL COMPARISONS OF NATIVE AND MUTANT CLASS I FILAMENTOUS BACTERIOPHAGES FF (FD, F1, M13), IF1 AND IKE 分子名称: INOVIRUS 著者 Marvin, D.A. 登録日 1994-01-31 公開日 1994-07-31 最終更新日 2024-02-07 実験手法 FIBER DIFFRACTION (3.3 Å) 主引用文献 Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe. J.Mol.Biol., 235, 1994
1IFJ	MOLECULAR MODELS AND STRUCTURAL COMPARISONS OF NATIVE AND MUTANT CLASS I FILAMENTOUS BACTERIOPHAGES FF (FD, F1, M13), IF1 AND IKE 分子名称: INOVIRUS 著者 Marvin, D.A. 登録日 1994-01-31 公開日 1994-07-31 最終更新日 2024-02-07 実験手法 FIBER DIFFRACTION (3.3 Å) 主引用文献 Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe. J.Mol.Biol., 235, 1994
3I64	Crystal structure of an O-methyltransferase (NcsB1) from neocarzinostatin biosynthesis in complex with S-adenosyl-L-homocysteine (SAH) and 1,4-dihydroxy-2-naphthoic acid (DHN) 分子名称: 1,4-dihydroxy-2-naphthoic acid, GLYCEROL, O-methyltransferase, ... 著者 Cooke, H.A, Bruner, S.D. 登録日 2009-07-06 公開日 2009-09-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Molecular basis of substrate promiscuity for the SAM-dependent O-methyltransferase NcsB1, involved in the biosynthesis of the enediyne antitumor antibiotic neocarzinostatin. Biochemistry, 48, 2009
3QKJ	The PWWP domain of human DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3 BETA in complex with a bis-tris molecule 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA cytosine-5 methyltransferase 3 beta isoform 6 variant, SULFATE ION 著者 Zeng, H, Amaya, M.F, Mackenzie, F, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Botchkarev, A, Min, J, Wu, H, Structural Genomics Consortium (SGC) 登録日 2011-02-01 公開日 2011-03-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Structural and Histone Binding Ability Characterizations of Human PWWP Domains. Plos One, 6, 2011
3Q87	Structure of E. cuniculi Mtq2-Trm112 complex responible for the methylation of eRF1 translation termination factor 分子名称: N6 adenine specific DNA methylase, Putative uncharacterized protein ECU08_1170, S-ADENOSYLMETHIONINE, ... 著者 Liger, D, Mora, L, Lazar, N, Figaro, S, Henri, J, Scrima, N, Buckingham, R.H, van Tilbeurgh, H, Heurgue-Hamard, V, Graille, M. 登録日 2011-01-06 公開日 2011-05-18 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.997 Å) 主引用文献 Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein Nucleic Acids Res., 2011
7ZBS	Solution NMR structure of the HTH_8cm consensus miniprotein in 30% TFE at 278K 分子名称: HTH_8cm 著者 Socha, O, Jakubec, D. 登録日 2022-03-24 公開日 2022-04-06 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Consensus design of structured miniproteins using spectral analysis of domain residue interaction networks To Be Published
5BU5	HK620 Tail Needle crystallized at pH 9 (crystal form I) 分子名称: CALCIUM ION, CHLORIDE ION, DNA stabilization protein 著者 Bhardwaj, A, Cingolani, G. 登録日 2015-06-03 公開日 2015-06-24 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.952 Å) 主引用文献 Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions. J.Biol.Chem., 291, 2016
7YV4	Crystal structure of human UCHL3 in complex with Farrerol 分子名称: (2~{S})-2-(4-hydroxyphenyl)-6,8-dimethyl-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, Ubiquitin carboxyl-terminal hydrolase isozyme L3 著者 Mao, Z.Y, Xu, X.J, Zhang, W.T. 登録日 2022-08-18 公開日 2023-04-19 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Farrerol directly activates the deubiqutinase UCHL3 to promote DNA repair and reprogramming when mediated by somatic cell nuclear transfer. Nat Commun, 14, 2023

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