Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8XQO
DownloadVisualize
BU of 8xqo by Molmil
Structure of human class T GPCR TAS2R14-Gi complex with Aristolochic acid A.
分子名称: 8-methoxy-6-nitro-naphtho[1,2-e][1,3]benzodioxole-5-carboxylic acid, CHOLESTEROL, Exo-alpha-sialidase,Taste receptor type 2 member 14,LgBiT, ...
著者Hu, X.L, Wu, L.J, Hua, T, Liu, Z.J.
登録日2024-01-05
公開日2024-07-10
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献Bitter taste TAS2R14 activation by intracellular tastants and cholesterol.
Nature, 631, 2024
6NFY
DownloadVisualize
BU of 6nfy by Molmil
Crystal structure of nonphosphorylated, HPK1 kinase domain in complex with sunitinib in the inactive state.
分子名称: Mitogen-activated protein kinase kinase kinase kinase 1, N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide
著者Johnson, E, McTigue, M, Cronin, C.N.
登録日2018-12-21
公開日2019-05-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation.
J.Biol.Chem., 294, 2019
1ZKW
DownloadVisualize
BU of 1zkw by Molmil
Crystal structure of Arg347Ala mutant of botulinum neurotoxin E catalytic domain
分子名称: CHLORIDE ION, ZINC ION, botulinum neurotoxin type E
著者Agarwal, R, Binz, T, Swaminathan, S.
登録日2005-05-04
公開日2005-06-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Analysis of Active Site Residues of Botulinum Neurotoxin E by Mutational, Functional, and Structural Studies: Glu335Gln Is an Apoenzyme.
Biochemistry, 44, 2005
9DOM
DownloadVisualize
BU of 9dom by Molmil
PVTX-405: A Potent, Highly Selective, and Orally Efficacious Molecular Glue Degrader of IKZF2 for Cancer Immunotherapy
分子名称: (3S)-3-(1'-benzyl-6-oxo-6,8-dihydro-2H,7H-spiro[furo[2,3-e]isoindole-3,4'-piperidin]-7-yl)piperidine-2,6-dione, Protein cereblon, ZINC ION, ...
著者Strickland, C.O, Rice, C.T.
登録日2024-09-19
公開日2025-05-14
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Development of PVTX-405 as a potent and highly selective molecular glue degrader of IKZF2 for cancer immunotherapy.
Nat Commun, 16, 2025
2OLW
DownloadVisualize
BU of 2olw by Molmil
Crystal Structure of E. coli pseudouridine synthase RluE
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ACETIC ACID, Ribosomal large subunit pseudouridine synthase E, ...
著者Pan, H, Ho, J.D, Stroud, R.M, Finer-Moore, J.
登録日2007-01-19
公開日2007-03-13
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Crystal Structure of E. coli rRNA Pseudouridine Synthase RluE.
J.Mol.Biol., 367, 2007
9IYB
DownloadVisualize
BU of 9iyb by Molmil
Cryo-EM Structure of the Prostaglandin D2 Receptor 2-PGD2 Coupled to G Protein
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
著者Xu, J, Xu, Y, Wu, C, Xu, H.E.
登録日2024-07-30
公開日2024-12-04
最終更新日2025-02-26
実験手法ELECTRON MICROSCOPY (2.82 Å)
主引用文献Molecular basis of lipid and ligand regulation of prostaglandin receptor DP2.
Proc.Natl.Acad.Sci.USA, 121, 2024
9GFT
DownloadVisualize
BU of 9gft by Molmil
Structure of the HrpA-bound E. coli disome, Class I
分子名称: 16S ribosomal RNA, 23S RNA, 50S ribosomal protein L11, ...
著者Esser, H.F, Berninghausen, O, Becker, T, Beckmann, R.
登録日2024-08-12
公開日2025-02-12
最終更新日2025-03-19
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The RNA helicase HrpA rescues collided ribosomes in E. coli.
Mol.Cell, 85, 2025
7ZP8
DownloadVisualize
BU of 7zp8 by Molmil
70S E. coli ribosome with a stalled filamin domain 5 nascent chain
分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Mitropoulou, A, Plessa, E, Wlodarski, T, Ahn, M, Chan, S.H.S, Becker, T.A, Beckmann, R, Cabrita, L.D, Christodoulou, J.
登録日2022-04-26
公開日2022-08-10
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献Modulating co-translational protein folding by rational design and ribosome engineering.
Nat Commun, 13, 2022
4RZB
DownloadVisualize
BU of 4rzb by Molmil
The structure of N-formimino-L-Glutamate Iminohydrolase from Pseudomonas aeruginosa complexed with N-formimino-L-Aspartate, SOAKED WITH MERCURY
分子名称: GLYCEROL, MERCURY (II) ION, N-[(E)-iminomethyl]-L-aspartic acid, ...
著者Fedorov, A.A, Fedorov, E.V, Marti-Arbona, R, Raushel, F.M, Almo, S.C.
登録日2014-12-19
公開日2015-01-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.863 Å)
主引用文献Structure of N-Formimino-l-glutamate Iminohydrolase from Pseudomonas aeruginosa.
Biochemistry, 54, 2015
4RDV
DownloadVisualize
BU of 4rdv by Molmil
The structure of N-formimino-L-Glutamate Iminohydrolase from Pseudomonas aeruginosa complexed with N-formimino-L-Aspartate
分子名称: 1,2-ETHANEDIOL, GLYCEROL, N-FORMIMINO-L-GLUTAMATE IMINOHYDROLASE, ...
著者Fedorov, A.A, Fedorov, E.V, Marti-Arbona, R, Raushel, F.M, Almo, S.C.
登録日2014-09-19
公開日2014-10-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献The structure of N-formimino-L-Glutamate Iminohydrolase from Pseudomonas aeruginosa complexed with N-formimino-L-Aspartate
To be Published
8Q4H
DownloadVisualize
BU of 8q4h by Molmil
a membrane-bound menaquinol:organohalide oxidoreductase complex RDH complex
分子名称: (~{Z})-1,2-bis(chloranyl)ethene, CO-METHYLCOBALAMIN, IRON/SULFUR CLUSTER, ...
著者Dongchun, N, Ekundayo, B, Henning, S, Julien, M, Holliger, C, Cimmino, L.
登録日2023-08-07
公開日2023-10-18
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.83 Å)
主引用文献Structure of a membrane-bound menaquinol:organohalide oxidoreductase.
Nat Commun, 14, 2023
6O5V
DownloadVisualize
BU of 6o5v by Molmil
Binary complex of native hAChE with oxime reactivator RS-170B
分子名称: 4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium, Acetylcholinesterase, GLYCEROL, ...
著者Gerlits, O, Kovalevsky, A, Radic, Z.
登録日2019-03-04
公開日2019-05-29
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.152 Å)
主引用文献Productive reorientation of a bound oxime reactivator revealed in room temperature X-ray structures of native and VX-inhibited human acetylcholinesterase.
J.Biol.Chem., 294, 2019
2OML
DownloadVisualize
BU of 2oml by Molmil
crystal structure of E. coli pseudouridine synthase RluE
分子名称: Ribosomal large subunit pseudouridine synthase E, SULFATE ION
著者Pan, H, Ho, J.D, Stroud, R.M, Finer-Moore, J.
登録日2007-01-22
公開日2007-03-13
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献The Crystal Structure of E. coli rRNA Pseudouridine Synthase RluE.
J.Mol.Biol., 367, 2007
8JI9
DownloadVisualize
BU of 8ji9 by Molmil
Crystal Structure of cas7 and AcrIE10 complex
分子名称: Uncharacterized protein, type I-E Cascade subunit cas7
著者Zhang, Y, Yu, C.Z, Sun, S.Y.
登録日2023-05-26
公開日2024-07-24
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献A new anti-CRISPR gene promotes the spread of drug-resistance plasmids in Klebsiella pneumoniae.
Nucleic Acids Res., 52, 2024
8A0L
DownloadVisualize
BU of 8a0l by Molmil
Tubulin-CW1-complex
分子名称: (3~{S},4~{R},8~{S},10~{S},12~{S},14~{S})-14-[(~{Z},4~{R})-4-(hydroxymethyl)hex-2-en-2-yl]-4,12-dimethoxy-9,9-dimethyl-3,8,10-tris(oxidanyl)-1-oxacyclotetradecan-2-one, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
著者Prota, A.E, Diaz, J.F, Steinmetz, M.O, Oliva, M.A.
登録日2022-05-28
公開日2022-12-14
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9981 Å)
主引用文献Chemical modulation of microtubule structure through the laulimalide/peloruside site.
Structure, 31, 2023
3ZJT
DownloadVisualize
BU of 3zjt by Molmil
Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation
分子名称: LEUCYL-TRNA SYNTHETASE, MAGNESIUM ION, TRNALEU5 UAA ISOACCEPTOR
著者Cusack, S, Palencia, A, Crepin, T, Hernandez, V, Akama, T, Baker, S.J, Bu, W, Feng, L, Freund, Y.R, Liu, L, Meewan, M, Mohan, M, Mao, W, Rock, F.L, Sexton, H, Sheoran, A, Zhang, Y, Zhang, Y, Zhou, Y, Nieman, J.A, Anugula, M.R, Keramane, E.M, Savariraj, K, Reddy, D.S, Sharma, R, Subedi, R, Singh, R, OLeary, A, Simon, N.L, DeMarsh, P.L, Mushtaq, S, Warner, M, Livermore, D.M, Alley, M.R.K, Plattner, J.J.
登録日2013-01-18
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria.
Antimicrob.Agents Chemother., 57, 2013
1ZN3
DownloadVisualize
BU of 1zn3 by Molmil
Crystal structure of Glu335Ala mutant of Clostridium botulinum neurotoxin type E
分子名称: CHLORIDE ION, ZINC ION, botulinum neurotoxin type E
著者Agarwal, R, Binz, T, Swaminathan, S.
登録日2005-05-11
公開日2005-07-05
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Analysis of Active Site Residues of Botulinum Neurotoxin E by Mutational, Functional, and Structural Studies: Glu335Gln Is an Apoenzyme.
Biochemistry, 44, 2005
1D6K
DownloadVisualize
BU of 1d6k by Molmil
NMR SOLUTION STRUCTURE OF THE 5S RRNA E-LOOP/L25 COMPLEX
分子名称: 5S RRNA E-LOOP (5SE), RIBOSOMAL PROTEIN L25
著者Stoldt, M, Wohnert, J, Ohlenschlager, O, Gorlach, M, Brown, L.R.
登録日1999-10-14
公開日1999-11-22
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The NMR structure of the 5S rRNA E-domain-protein L25 complex shows preformed and induced recognition.
EMBO J., 18, 1999
2R6P
DownloadVisualize
BU of 2r6p by Molmil
Fit of E protein and Fab 1A1D-2 into 24 angstrom resolution cryoEM map of Fab complexed with dengue 2 virus.
分子名称: Heavy chain of 1A1D-2, Light chain of 1A1D-2, Major envelope protein E
著者Lok, S.M, Kostyuchenko, V.K, Holdaway, H.A, Chipman, P.R, Kuhn, R.J, Rossmann, M.G.
登録日2007-09-06
公開日2007-12-25
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (24 Å)
主引用文献Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins.
Nat.Struct.Mol.Biol., 15, 2008
1GKS
DownloadVisualize
BU of 1gks by Molmil
ECTOTHIORHODOSPIRA HALOPHILA CYTOCHROME C551 (REDUCED), NMR, 37 STRUCTURES
分子名称: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
著者Bersch, B, Blackledge, M.J, Meyer, T.E, Marion, D.
登録日1996-07-16
公開日1997-01-27
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Ectothiorhodospira halophila ferrocytochrome c551: solution structure and comparison with bacterial cytochromes c.
J.Mol.Biol., 264, 1996
4DT0
DownloadVisualize
BU of 4dt0 by Molmil
The structure of the peripheral stalk subunit E from Pyrococcus horikoshii
分子名称: V-type ATP synthase subunit E
著者Balakrishna, A.M, Gruber, G.
登録日2012-02-20
公開日2012-05-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献The structure of subunit E of the Pyrococcus horikoshii OT3 A-ATP synthase gives insight into the elasticity of the peripheral stalk.
J.Mol.Biol., 420, 2012
7DYQ
DownloadVisualize
BU of 7dyq by Molmil
Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile
分子名称: 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile, FE (III) ION, Lysine-specific demethylase 4D
著者Wang, T, Yang, L.
登録日2021-01-22
公開日2022-01-26
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.998 Å)
主引用文献Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile
To Be Published
8OWA
DownloadVisualize
BU of 8owa by Molmil
SR Ca(2+)-ATPase in the E2 state complexed with the photoswitch-thapsigargin derivative AzTG-4
分子名称: ACETYL GROUP, SODIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, ...
著者Hjorth-Jensen, S.J, Konrad, D.B, Quistgaard, E.M.H, Hansen, L.C, Novak, A, Chu, H, Jurasek, M, Zimmermann, T, Andersen, J.L, Baran, P.S, Nissen, P, Trauner, D.
登録日2023-04-27
公開日2023-06-21
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Photoswitchable inhibitors of the sarco(endo)plasmic calcium pump
To Be Published
8OWL
DownloadVisualize
BU of 8owl by Molmil
SR Ca(2+)-ATPase in the E2 state complexed with the photoswitch-thapsigargin derivative AzTG-6
分子名称: ACETYL GROUP, SODIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, ...
著者Hjorth-Jensen, S.J, Konrad, D.B, Quistgaard, E.M.H, Hansen, L.C, Novak, A, Chu, H, Jurasek, M, Zimmermann, T, Andersen, J.L, Baran, P.S, Nissen, P, Trauner, D.
登録日2023-04-28
公開日2023-06-21
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Photoswitchable inhibitors of the sarco(endo)plasmic calcium pump
To Be Published
7Z20
DownloadVisualize
BU of 7z20 by Molmil
70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Mitropoulou, A, Plessa, E, Wlodarski, T, Ahn, M, Sidhu, H, Becker, T.A, Beckmann, R, Cabrita, L.D, Christodoulou, J.
登録日2022-02-25
公開日2022-08-10
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (2.29 Å)
主引用文献Modulating co-translational protein folding by rational design and ribosome engineering.
Nat Commun, 13, 2022

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon