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6B3K
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Crystal structure of mutant Spinach RNA aptamer in complex with Fab BL3-6
分子名称: Heavy chain of Fab BL3-6, Light chain of Fab BL3-6, MAGNESIUM ION, ...
著者DasGupta, S, Koirala, D, Shelke, S.A, Piccirilli, J.A.
登録日2017-09-22
公開日2017-12-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography.
Nucleic Acids Res., 46, 2018
8DZ0
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BU of 8dz0 by Molmil
Crystal Structure of SARS-CoV-2 Main protease in complex with Ensitrelvir
分子名称: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione, DIMETHYL SULFOXIDE
著者Noske, G.D, Oliva, G, Godoy, A.S.
登録日2022-08-06
公開日2022-10-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structural basis of nirmatrelvir and ensitrelvir activity against naturally occurring polymorphisms of the SARS-CoV-2 main protease.
J.Biol.Chem., 299, 2023
8DRY
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BU of 8dry by Molmil
Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp12-nsp13 (C12) cut site sequence
分子名称: DI(HYDROXYETHYL)ETHER, Fusion protein of 3C-like proteinase nsp5 and nsp12-nsp13 (C12) cut site
著者Lee, J, Kenward, C, Worrall, L.J, Vuckovic, M, Paetzel, M, Strynadka, N.C.J.
登録日2022-07-21
公開日2022-09-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation.
Nat Commun, 13, 2022
6PDF
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BU of 6pdf by Molmil
Crystal structure of MYST acetyltransferase domain in complex with inhibitor 55
分子名称: 2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-(2H-1,2,3-triazol-2-yl)benzohydrazide, GLYCEROL, Histone acetyltransferase KAT8, ...
著者Hermans, S.J, Parker, M.W, Thomas, T, Baell, J.B.
登録日2019-06-18
公開日2020-04-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Discovery of Acylsulfonohydrazide-Derived Inhibitors of the Lysine Acetyltransferase, KAT6A, as Potent Senescence-Inducing Anti-Cancer Agents.
J.Med.Chem., 63, 2020
6N8R
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BU of 6n8r by Molmil
Crystal structure of the human cell polarity protein Lethal Giant Larvae 2 (Lgl2). aPKC phosphorylated, crystal form 2.
分子名称: CHLORIDE ION, GLYCEROL, Lethal(2) giant larvae protein homolog 2
著者Almagor, L, Weis, W.I.
登録日2018-11-30
公開日2019-05-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural insights into the aPKC regulatory switch mechanism of the human cell polarity protein lethal giant larvae 2.
Proc.Natl.Acad.Sci.USA, 116, 2019
8DZA
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BU of 8dza by Molmil
Crystal Structure of SARS-CoV-2 Main protease A193T mutant in complex with Nirmatrelvir
分子名称: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
著者Noske, G.D, Oliva, G, Godoy, A.S.
登録日2022-08-06
公開日2022-10-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.961 Å)
主引用文献Structural basis of nirmatrelvir and ensitrelvir activity against naturally occurring polymorphisms of the SARS-CoV-2 main protease.
J.Biol.Chem., 299, 2023
6PG4
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WDR5delta32 bound to (2-methyl-1H-imidazol-4-yl)methanol
分子名称: (2-methyl-1H-imidazol-4-yl)methanol, SULFATE ION, WD repeat-containing protein 5
著者Dennis, M.L, Peat, T.S.
登録日2019-06-24
公開日2019-12-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Fragment screening for a protein-protein interaction inhibitor to WDR5.
Struct Dyn., 6, 2019
7WWO
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BU of 7wwo by Molmil
Dimer form of hypothetical protein TTHA1873 from Thermus thermophilus
分子名称: CALCIUM ION, hypothetical protein TTHA1873
著者Yuvaraj, I, Sekar, K.
登録日2022-02-14
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Structure of the hypothetical protein TTHA1873 from Thermus thermophilus.
Acta Crystallogr.,Sect.F, 78, 2022
6PG9
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WDR5delta23 bound to N-(4-(5-(hydroxymethyl)-1H-imidazol-2-yl)butyl)benzamide
分子名称: N-{4-[4-(hydroxymethyl)-1H-imidazol-2-yl]butyl}benzamide, WD repeat-containing protein 5
著者Dennis, M.L, Peat, T.S.
登録日2019-06-24
公開日2019-12-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Fragment screening for a protein-protein interaction inhibitor to WDR5.
Struct Dyn., 6, 2019
8E8U
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BU of 8e8u by Molmil
Structure of the LOR domain of human AASS
分子名称: Alpha-aminoadipic semialdehyde synthase, mitochondrial, MAGNESIUM ION
著者Khamrui, S, Lazarus, M.B.
登録日2022-08-25
公開日2022-10-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Characterization and structure of the human lysine-2-oxoglutarate reductase domain, a novel therapeutic target for treatment of glutaric aciduria type 1.
Open Biology, 12, 2022
4ZQA
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BU of 4zqa by Molmil
Crystal Structure of the Sds3 Dimerization Domain
分子名称: Sin3 histone deacetylase corepressor complex component SDS3
著者Chan, C.W, Mondragon, A, Clark, M, Radhakrishnan, I.
登録日2015-05-08
公開日2015-07-15
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex.
Proc.Natl.Acad.Sci.USA, 112, 2015
8PTA
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BU of 8pta by Molmil
JNK1 covalently bound to BD837 cyclohexenone based inhibitor
分子名称: GLYCEROL, Mitogen-activated protein kinase 8, methyl (1R,3S)-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]carbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate
著者Sok, P, Poti, A, Remenyi, A.
登録日2023-07-13
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Tunable c-Jun N-terminal kinase (JNK) inhibitors that target a specific cysteine by a reversible covalent bond
To Be Published
6B4J
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BU of 6b4j by Molmil
Crystal structure of human Gle1 CTD-Nup42 GBM-DDX19B(AMPPNP) complex
分子名称: ATP-dependent RNA helicase DDX19B, MAGNESIUM ION, Nucleoporin GLE1, ...
著者Lin, D.H, Correia, A.R, Cai, S.W, Huber, F.M, Jette, C.A, Hoelz, A.
登録日2017-09-26
公開日2018-06-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural and functional analysis of mRNA export regulation by the nuclear pore complex.
Nat Commun, 9, 2018
4ZQK
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BU of 4zqk by Molmil
Structure of the complex of human programmed death-1 (PD-1) and its ligand PD-L1.
分子名称: Programmed cell death 1 ligand 1, Programmed cell death protein 1, SODIUM ION
著者Zak, K.M, Dubin, G, Holak, T.A.
登録日2015-05-10
公開日2015-11-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure of the Complex of Human Programmed Death 1, PD-1, and Its Ligand PD-L1.
Structure, 23, 2015
8DVO
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BU of 8dvo by Molmil
The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044
分子名称: 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-{[2-(trifluoromethyl)phenyl]methyl}-1,6-dihydropyrimidine-4-carboxamide, Hexa Vinylpyrrolidone K15, MANGANESE (II) ION, ...
著者Cuypers, M.G, Slavish, J.P, Rankovic, Z, White, S.W.
登録日2022-07-29
公開日2022-09-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044
To Be Published
8PGB
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BU of 8pgb by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2850
分子名称: 3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(5-methyl-1,2,4-oxadiazol-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
著者Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
登録日2023-06-18
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Crystal structure of the metallo-beta-lactamase VIM1 with 2850
To Be Published
4YXB
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BU of 4yxb by Molmil
FliM(SPOA)::FliN fusion protein
分子名称: Ambiguous peptide density, Flagellar motor switch protein FliM,Flagellar motor switch protein FliN, FliM::FliN fragment, ...
著者Notti, R.Q, Stebbins, C.E.
登録日2015-03-22
公開日2015-06-03
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献A common assembly module in injectisome and flagellar type III secretion sorting platforms.
Nat Commun, 6, 2015
7WUE
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BU of 7wue by Molmil
Crystal structure of SARS-CoV-2 Receptor Binding Domain in complex with the monoclonal antibody m31A7
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Mohapatra, A.
登録日2022-02-08
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Vaccination with SARS-CoV-2 spike protein lacking glycan shields elicits enhanced protective responses in animal models.
Sci Transl Med, 14, 2022
8DZ6
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BU of 8dz6 by Molmil
Crystal Structure of SARS-CoV-2 Main protease mutant Q189K in complex with Nirmatrelvir
分子名称: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
著者Noske, G.D, Oliva, G, Godoy, A.S.
登録日2022-08-06
公開日2022-10-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.366 Å)
主引用文献Structural basis of nirmatrelvir and ensitrelvir activity against naturally occurring polymorphisms of the SARS-CoV-2 main protease.
J.Biol.Chem., 299, 2023
7OWD
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BU of 7owd by Molmil
Structure of CYLD CAP-Gly3 (467-552) bound to Ub; tetragonal space group
分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase CYLD
著者Elliott, P.R, Komander, D.
登録日2021-06-17
公開日2021-10-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Regulation of CYLD activity and specificity by phosphorylation and ubiquitin-binding CAP-Gly domains.
Cell Rep, 37, 2021
8PGQ
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BU of 8pgq by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 3225
分子名称: 7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
著者Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
登録日2023-06-18
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Crystal structure of the metallo-beta-lactamase VIM1 with 3225
To Be Published
4YXV
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BU of 4yxv by Molmil
PksG, a HMG-CoA Synthase from Bacillus subtilus
分子名称: Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG
著者Till, M, Nair, A.V, Robson, A, Race, P.R.
登録日2015-03-23
公開日2016-06-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献PksG, a HMG-CoA Synthase from Bacillus subtilus
To Be Published
6PHL
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BU of 6phl by Molmil
Crystal structure of glucagon analog with mono-stereoinversion at position 23 (D-Val23) in space group I41 at 1.44 A resolution
分子名称: Glucagon
著者Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D.
登録日2019-06-25
公開日2020-07-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.443 Å)
主引用文献High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement.
To Be Published
8E8T
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BU of 8e8t by Molmil
Structure of the short LOR domain of human AASS
分子名称: Alpha-aminoadipic semialdehyde synthase, mitochondrial
著者Khamrui, S, Lazarus, M.B.
登録日2022-08-25
公開日2022-10-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Characterization and structure of the human lysine-2-oxoglutarate reductase domain, a novel therapeutic target for treatment of glutaric aciduria type 1.
Open Biology, 12, 2022
8PJW
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Crystal structure of the computationally designed SAKe6FE protein
分子名称: SAKe6FE
著者Wouters, S.M.L.
登録日2023-06-23
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Computational design of the SAKe scaffold proteins
To Be Published

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件を2024-08-21に公開中

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