PDB: 166 件ウェブページステータス検索Chemie searchBIRD

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4LHR	Crystal structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase from Burkholderia thailandensis 分子名称: Deoxyuridine 5'-triphosphate nucleotidohydrolase, TETRAETHYLENE GLYCOL 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2013-07-01 公開日 2013-08-07 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase from Burkholderia thailandensis TO BE PUBLISHED
4GV8	DUTPase from phage phi11 of S.aureus: visualization of the species-specific insert 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DUTPase, MAGNESIUM ION 著者 Leveles, I, Harmat, V, Nemeth, V, Bendes, A, Szabo, J, Kadar, V, Zagyva, I, Rona, G, Toth, J, Vertessy, B.G. 登録日 2012-08-30 公開日 2013-09-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure and enzymatic mechanism of a moonlighting dUTPase Acta Crystallogr.,Sect.D, 69, 2013
4XJC	dCTP deaminase-dUTPase from Bacillus halodurans 分子名称: DI(HYDROXYETHYL)ETHER, Deoxycytidine triphosphate deaminase, MAGNESIUM ION, ... 著者 Oehlenschlaeger, C, Loevgreen, M, Willemoes, M, Harris, P. 登録日 2015-01-08 公開日 2015-03-18 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Bacillus halodurans Strain C125 Encodes and Synthesizes Enzymes from Both Known Pathways To Form dUMP Directly from Cytosine Deoxyribonucleotides. Appl.Environ.Microbiol., 81, 2015
4OOP	Arabidopsis thaliana dUTPase with with magnesium and alpha,beta-imido-dUTP 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, MAGNESIUM ION 著者 Inoguchi, N, Bajaj, M, Moriyama, H. 登録日 2014-02-03 公開日 2015-04-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural insights into the mechanism defining substrate affinity in Arabidopsis thaliana dUTPase: the role of tryptophan 93 in ligand orientation. BMC Res Notes, 8, 2015
4OOQ	apo-dUTPase from Arabidopsis thaliana 分子名称: Deoxyuridine 5'-triphosphate nucleotidohydrolase, MAGNESIUM ION, SULFATE ION 著者 Inoguchi, N, Bajaj, M, Moriyama, H. 登録日 2014-02-03 公開日 2015-07-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.004 Å) 主引用文献 Structural insights into the mechanism defining substrate affinity in Arabidopsis thaliana dUTPase: the role of tryptophan 93 in ligand orientation. BMC Res Notes, 8, 2015
4WRK	The 3D structure of D95N mutant DUTPase from phage phi11 of S. aureus reveals the molecular details for the coordination of a structural Mg(II) ion 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DUTPase, MAGNESIUM ION 著者 Bendes, A.A, Leveles, I, Vertessy, B.G. 登録日 2014-10-24 公開日 2015-12-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The 3D structure of D95N mutant DUTPase from phage phi11 of S. aureus reveals the molecular details for the coordination of a structural Mg(II) ion To Be Published
5CCT	Staphylococcus bacteriophage 80alpha dUTPase G164S mutant with dUpNHpp. 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DUTPase, MAGNESIUM ION 著者 Maiques, E, Quiles-Puchalt, N, Donderis, J, Ciges, J.R, Alite, C, Bowring, J, Penades, J.R, Marina, A. 登録日 2015-07-02 公開日 2016-05-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party. Nucleic Acids Res., 44, 2016
5CCO	Staphylococcus bacteriophage 80alpha dUTPase with dUMP. 分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, DUTPase, MAGNESIUM ION 著者 Maiques, E, Quiles-Puchalt, N, Donderis, J, Ciges, J.R, Alite, C, Bowring, J, Penades, J.R, Marina, A. 登録日 2015-07-02 公開日 2016-05-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party. Nucleic Acids Res., 44, 2016
5ECT	Mycobacterium tuberculosis dUTPase G143STOP mutant 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Deoxyuridine 5'-triphosphate nucleotidohydrolase, ... 著者 Nagy, G.N, Leveles, I, Harmat, V, Vertessy, G.B. 登録日 2015-10-20 公開日 2016-11-02 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Structural Characterization of Arginine Fingers: Identification of an Arginine Finger for the Pyrophosphatase dUTPases. J. Am. Chem. Soc., 138, 2016
5EDD	Crystal structure of Mycobacterium tuberculosis dUTPase R140K, H145W mutant 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Deoxyuridine 5'-triphosphate nucleotidohydrolase, ... 著者 Nagy, G.N, Leveles, I, Lopata, A, Harmat, V, Toth, J, Vertessy, G.B. 登録日 2015-10-21 公開日 2016-11-02 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Structural Characterization of Arginine Fingers: Identification of an Arginine Finger for the Pyrophosphatase dUTPases. J. Am. Chem. Soc., 138, 2016
5F9K	Dictyostelium discoideum dUTPase at 2.2 Angstrom 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, MAGNESIUM ION, ... 著者 Inoguchi, N, Chia, C.P, Heck, K, Moriyama, H. 登録日 2015-12-09 公開日 2016-12-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.179 Å) 主引用文献 Mitochondrial localization of Dictyostelium discoideum dUTPase mediated by its N-terminus. Bmc Res Notes, 13, 2020
5VJY	Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri 分子名称: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, dUTP pyrophosphatase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2017-04-20 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri to be published
5NZ2	Twist and induce: Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. D95E mutant from dUTPase 80alpha phage. 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DUTPase, MAGNESIUM ION 著者 Alite, C, Humphrey, S, Donderis, J, Maiques, E, Ciges-Tomas, J.R, Penades, J.R, Marina, A. 登録日 2017-05-12 公開日 2017-09-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 alpha dUTPase. Sci Rep, 7, 2017
5NYZ	Twist and induce: Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. D95E mutant from dUTPase 80alpha phage. 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DUTPase, MAGNESIUM ION 著者 Alite, C, Humphrey, S, Donderis, J, Maiques, E, Ciges-Tomas, J.R, Penades, J.R, Marina, A. 登録日 2017-05-12 公開日 2017-09-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 alpha dUTPase. Sci Rep, 7, 2017
5H4J	Crystal structure of Human dUTPase in complex with N-[(1R)-1-[3-(Cyclopentyloxy)-phenyl]-ethyl]-3-[(3,4-dihydro-2,4-dioxo-1(2H)-pyrimidinyl)methoxy]-1-propanesulfonamide 分子名称: DIMETHYL SULFOXIDE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial, ... 著者 Chong, K.T, Miyahara, S, Miyakoshi, H, Fukuoka, M. 登録日 2016-11-01 公開日 2017-11-01 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 TAS-114, a First-in-Class Dual dUTPase/DPD Inhibitor, Demonstrates Potential to Improve Therapeutic Efficacy of Fluoropyrimidine-Based Chemotherapy. Mol. Cancer Ther., 17, 2018
5Y5P	Crystal structure of the dUTPase of white spot syndrome virus in complex with dU,PPi and Mg2+ 分子名称: 2'-DEOXYURIDINE, MAGNESIUM ION, PYROPHOSPHATE 2-, ... 著者 Ma, Q, Zang, K. 登録日 2017-08-09 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 The dUTPase of white spot syndrome virus assembles its active sites in a noncanonical manner. J. Biol. Chem., 293, 2018
5Y5Q	Crystal structure of the WSSV dUTPase D88N/R158E mutant in complex with dUTP 分子名称: DEOXYURIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Wsv112 著者 Ma, Q, Zang, K. 登録日 2017-08-09 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 The dUTPase of white spot syndrome virus assembles its active sites in a noncanonical manner. J. Biol. Chem., 293, 2018
5Y5O	Crystal structure of the dUTPase of white spot syndrome virus in the apo state 分子名称: Wsv112 著者 Ma, Q, Zang, K. 登録日 2017-08-09 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The dUTPase of white spot syndrome virus assembles its active sites in a noncanonical manner. J. Biol. Chem., 293, 2018
6MAI	Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 分子名称: 1,2-ETHANEDIOL, Deoxyuridine 5'-triphosphate nucleotidohydrolase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-08-27 公開日 2018-09-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 TO BE PUBLISHED
6MAO	Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 in complex with dUMP (Deoxyuridine 5'-monophosphate) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-08-28 公開日 2018-09-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 in complex with dUMP (Deoxyuridine 5'-monophosphate) TO BE PUBLISHED
6MJK	Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with deoxyuridine 分子名称: 2'-DEOXYURIDINE, MAGNESIUM ION, PYROPHOSPHATE, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-09-21 公開日 2018-10-31 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with deoxyuridine to be published
6H4C	A polyamorous repressor: deciphering the evolutionary strategy used by the phage-inducible chromosomal islands to spread in nature. 分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, NICKEL (II) ION, ... 著者 Ciges-Tomas, J.R, Alite, C, Bowring, J.Z, Donderis, J, Penades, J.R, Marina, A. 登録日 2018-07-20 公開日 2019-08-28 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 The structure of a polygamous repressor reveals how phage-inducible chromosomal islands spread in nature. Nat Commun, 10, 2019
6HDE	Structure of Escherichia coli dUTPase Q93H mutant 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, MAGNESIUM ION 著者 Benedek, A, Vertessy, B.G, Leveles, I. 登録日 2018-08-17 公開日 2019-08-28 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 The Role of a Key Amino Acid Position in Species-Specific Proteinaceous dUTPase Inhibition. Biomolecules, 9, 2019
6KY8	Crystal structure of ASFV dUTPase 分子名称: E165R 著者 Li, C, Chai, Y, Song, H, Qi, J, Sun, Y, Gao, G.F. 登録日 2019-09-17 公開日 2019-11-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.301 Å) 主引用文献 Crystal Structure of African Swine Fever Virus dUTPase Reveals a Potential Drug Target. Mbio, 10, 2019
6KY9	Crystal structure of ASFV dUTPase and UMP complex 分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, E165R 著者 Li, C, Chai, Y, Song, H, Qi, J, Sun, Y, Gao, G.F. 登録日 2019-09-17 公開日 2019-11-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal Structure of African Swine Fever Virus dUTPase Reveals a Potential Drug Target. Mbio, 10, 2019

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