PDB: 589 件ウェブページステータス検索Chemie searchBIRD

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2DUK	Crystal structure of MS0616 分子名称: MS0616 著者 Hosaka, T, Nishino, A, Uchikubo, K.-T, Kishishita, S, Murayama, K, Shirouzu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-07-24 公開日 2007-01-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.62 Å) 主引用文献 Crystal structure of MS0616 To be Published
2DSC	Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and ADP-ribose 分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-sugar pyrophosphatase, MAGNESIUM ION 著者 Zha, M, Zhong, C, Ding, J. 登録日 2006-06-28 公開日 2006-11-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity J.Mol.Biol., 364, 2006
2ICK	Human isopentenyl diphophate isomerase complexed with substrate analog 分子名称: DIMETHYLALLYL DIPHOSPHATE, Isopentenyl-diphosphate delta isomerase, MANGANESE (II) ION 著者 Zheng, W, Bartlam, M, Rao, Z. 登録日 2006-09-12 公開日 2007-03-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis J.Mol.Biol., 366, 2007
2KDV	Solution structure of RNA Pyrophosphohydrolase RppH from Escherichia coli 分子名称: RNA pyrophosphohydrolase 著者 Bi, Y, Li, H, Jin, C. 登録日 2009-01-19 公開日 2010-01-26 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of RNA pyrophosphohydrolase RppH from Escherichia coli To be Published
2ICJ	The crystal structure of human isopentenyl diphophate isomerase 分子名称: Isopentenyl-diphosphate delta isomerase, MAGNESIUM ION, SULFATE ION 著者 Zheng, W, Bartlam, M, Rao, Z. 登録日 2006-09-12 公開日 2007-03-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis J.Mol.Biol., 366, 2007
2KDW	Solution structure of RppH mutant E53A from Escherichia coli 分子名称: RNA pyrophosphohydrolase 著者 Li, H, Bi, Y, Jin, C. 登録日 2009-01-19 公開日 2010-01-26 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of RppH mutant E53A from Escherichia coli To be Published
2I8T	GDP-mannose mannosyl hydrolase-calcium-GDP-mannose complex 分子名称: CALCIUM ION, GDP-mannose mannosyl hydrolase, GLYCEROL, ... 著者 Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K. 登録日 2006-09-03 公開日 2007-06-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme Biochemistry, 46, 2007
2AZW	Crystal structure of the MutT/nudix family protein from Enterococcus faecalis 分子名称: MutT/nudix family protein, PENTAETHYLENE GLYCOL 著者 Zhang, R, Zhou, M, Moy, S, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2005-09-12 公開日 2006-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The 1.9A crystal structure of the MutT/nudix family protein from Enterococcus faecalis To be Published
2GT4	Crystal Structure of the Y103F mutant of the GDP-mannose mannosyl hydrolase in complex with GDP-mannose and MG+2 分子名称: GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, MAGNESIUM ION, ... 著者 Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, Mildvan, A.S, Amzel, L.A. 登録日 2006-04-27 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction. Biochemistry, 45, 2006
2B0V	NUDIX hydrolase from Nitrosomonas europaea. 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, NUDIX hydrolase, ... 著者 Osipiuk, J, Skarina, T, Savchenko, A, Edwards, A, Joachimiak, A, MCSG, Midwest Center for Structural Genomics (MCSG) 登録日 2005-09-14 公開日 2005-09-27 最終更新日 2018-01-24 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 X-ray structure of NUDIX hydrolase from Nitrosomonas europaea. To be Published
2B06	Crystal structure of the MutT/nudix family protein from Streptococcus pneumoniae 分子名称: MAGNESIUM ION, MutT/nudix family protein 著者 Zhang, R, Zhou, M, Abdullah, J, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2005-09-13 公開日 2006-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 The 1.4 A crystal structure of the MutT/nudix family protein from Streptococcus pneumoniae To be Published
2I6K	Crystal structure of human type I IPP isomerase complexed with a substrate analog 分子名称: ACETIC ACID, AMINOETHANOLPYROPHOSPHATE, Isopentenyl-diphosphate delta-isomerase 1, ... 著者 Zhang, C, Wei, Z, Gong, W. 登録日 2006-08-29 公開日 2007-06-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of human IPP isomerase: new insights into the catalytic mechanism J.Mol.Biol., 366, 2007
2I8U	GDP-mannose mannosyl hydrolase-calcium-GDP product complex 分子名称: CALCIUM ION, GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE 著者 Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K. 登録日 2006-09-03 公開日 2007-06-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme Biochemistry, 46, 2007
2DSD	Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and AMP 分子名称: ADENOSINE MONOPHOSPHATE, ADP-sugar pyrophosphatase, MAGNESIUM ION 著者 Zha, M, Zhong, C, Ding, J. 登録日 2006-06-28 公開日 2006-11-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity J.Mol.Biol., 364, 2006
2GT2	Structure of the E. coli GDP-mannose mannosyl hydrolase 分子名称: GDP-mannose mannosyl hydrolase 著者 Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, MIldvan, A.S, Amzel, L.M. 登録日 2006-04-27 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction. Biochemistry, 45, 2006
2FKB	Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12 分子名称: ACETATE ION, GLYCEROL, MAGNESIUM ION, ... 著者 Nocek, B, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-01-04 公開日 2006-02-21 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12 To be Published
2DSB	Crystal structure of human ADP-ribose pyrophosphatase NUDT5 分子名称: ADP-sugar pyrophosphatase 著者 Zha, M, Zhong, C, Ding, J. 登録日 2006-06-28 公開日 2006-11-14 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity J.Mol.Biol., 364, 2006
2G74	Y104F mutant of type 1 isopentenylpyrophosphate-dimethylallylpyrophosphate isomerase 分子名称: Isopentenyl-diphosphate delta-isomerase, MAGNESIUM ION, MANGANESE (II) ION 著者 de Ruyck, J, Wouters, J. 登録日 2006-02-27 公開日 2006-04-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Structural role for Tyr-104 in Escherichia coli isopentenyl-diphosphate isomerase: site-directed mutagenesis, enzymology, and protein crystallography. J.Biol.Chem., 281, 2006
2YYH	Crystal structure of Nudix family protein from Aquifex aeolicus 分子名称: 8-OXO-dGTPase domain 著者 Nakagawa, N, Kishishita, S, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-30 公開日 2007-11-06 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of Nudix family protein from Aquifex aeolicus To be Published
2YVP	Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8 分子名称: MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, MutT/nudix family protein 著者 Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-13 公開日 2008-02-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
2YVN	Crystal structure of NDX2 from thermus thermophilus HB8 分子名称: MutT/nudix family protein 著者 Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-13 公開日 2008-02-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
2YVM	Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8 分子名称: MAGNESIUM ION, MutT/nudix family protein 著者 Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-13 公開日 2008-02-26 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
3A6V	Crystal structure of the MutT protein in MN(II) bound holo form 分子名称: L(+)-TARTARIC ACID, MANGANESE (II) ION, Mutator mutT protein, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2009-09-09 公開日 2009-10-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base J.Biol.Chem., 285, 2010
3A6T	Crystal structure of MutT-8-OXO-DGMP complex 分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, Mutator mutT protein, SODIUM ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2009-09-09 公開日 2009-10-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base J.Biol.Chem., 285, 2010
3AC9	Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese 分子名称: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate), ADP-sugar pyrophosphatase, MANGANESE (II) ION 著者 Arimori, T, Yamagata, Y. 登録日 2009-12-30 公開日 2011-01-12 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Diverse substrate recognition and hydrolysis mechanisms of human NUDT5 Nucleic Acids Res., 39, 2011

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