Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1Q4B
DownloadVisualize
BU of 1q4b by Molmil
S65T Q80R Green Fluorescent Protein (GFP) pH 5.5
分子名称: Green Fluorescent Protein
著者Jain, R.K, Ranganathan, R.
登録日2003-08-02
公開日2004-02-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Local complexity of amino acid interactions in a protein core.
Proc.Natl.Acad.Sci.USA, 101, 2004
1S3G
DownloadVisualize
BU of 1s3g by Molmil
Crystal structure of adenylate kinase from Bacillus globisporus
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION
著者Bae, E, Phillips Jr, G.N.
登録日2004-01-13
公開日2004-05-04
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases.
J.Biol.Chem., 279, 2004
1P3J
DownloadVisualize
BU of 1p3j by Molmil
Adenylate Kinase from Bacillus subtilis
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
著者Bae, E, Phillips Jr, G.N.
登録日2003-04-17
公開日2004-05-04
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases.
J.Biol.Chem., 279, 2004
1S6Z
DownloadVisualize
BU of 1s6z by Molmil
Enhanced Green Fluorescent Protein Containing the Y66L Substitution
分子名称: CHLORIDE ION, green fluorescent protein
著者Rosenow, M.A, Huffman, H.A, Phail, M.E, Wachter, R.M.
登録日2004-01-28
公開日2004-05-04
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The Crystal Structure of the Y66L Variant of Green Fluorescent Protein Supports a Cyclization-Oxidation-Dehydration Mechanism for Chromophore Maturation(,).
Biochemistry, 43, 2004
1RMO
DownloadVisualize
BU of 1rmo by Molmil
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
分子名称: wunen-nonfunctional GFP fusion protein
著者Budisa, N, Pal, P.P, Alefelder, S, Birle, P, Krywcun, T, Rubini, M, Wenger, W, Bae, J.H, Steiner, T.
登録日2003-11-28
公開日2004-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code
Biol.Chem., 385, 2004
1RM9
DownloadVisualize
BU of 1rm9 by Molmil
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
分子名称: avermectin-sensitive chloride channel GluCl beta/cyan fluorescent protein fusion
著者Budisa, N, Pal, P.P, Alefelder, S, Birle, P, Krywcun, T, Rubini, M, Wenger, W, Bae, J.H, Steiner, T.
登録日2003-11-27
公開日2004-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code
Biol.Chem., 385, 2004
1RMP
DownloadVisualize
BU of 1rmp by Molmil
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
分子名称: SIGF1-GFP fusion protein
著者Budisa, N, Pal, P.P, Alefelder, S, Birle, P, Krywcun, T, Rubini, M, Wenger, W, Bae, J.H, Steiner, T.
登録日2003-11-28
公開日2004-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code
Biol.Chem., 385, 2004
1RMM
DownloadVisualize
BU of 1rmm by Molmil
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
分子名称: SIGF1-GFP fusion protein
著者Budisa, N, Pal, P.P, Alefelder, S, Birle, P, Krywcun, T, Rubini, M, Wenger, W, Bae, J.H, Steiner, T.
登録日2003-11-28
公開日2004-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code
Biol.Chem., 385, 2004
1RRX
DownloadVisualize
BU of 1rrx by Molmil
Crystallographic Evidence for Isomeric Chromophores in 3-Fluorotyrosyl-Green Fluorescent Protein
分子名称: SIGF1-GFP fusion protein
著者Bae, J.H, Paramita Pal, P, Moroder, L, Huber, R, Budisa, N.
登録日2003-12-09
公開日2004-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystallographic Evidence for Isomeric Chromophores in 3-Fluorotyrosyl-Green Fluorescent Protein.
Chembiochem, 5, 2004
1TEV
DownloadVisualize
BU of 1tev by Molmil
Crystal structure of the human UMP/CMP kinase in open conformation
分子名称: SULFATE ION, UMP-CMP kinase
著者Segura-Pena, D, Sekulic, N, Ort, S, Konrad, M, Lavie, A.
登録日2004-05-25
公開日2004-06-22
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate-induced Conformational Changes in Human UMP/CMP Kinase.
J.Biol.Chem., 279, 2004
1SVU
DownloadVisualize
BU of 1svu by Molmil
Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions
分子名称: Modification methylase HhaI, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
著者Dong, A, Zhou, L, Zhang, X, Stickel, S, Roberts, R.J, Cheng, X.
登録日2004-03-30
公開日2004-06-29
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions
Biol.Chem., 385, 2004
1SKM
DownloadVisualize
BU of 1skm by Molmil
HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site
分子名称: 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3', 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', Modification methylase HhaI, ...
著者Horton, J.R, Ratner, G, Banavali, N, Huang, N, Marquez, V.E, MacKerell, A.D, Cheng, X.
登録日2004-03-05
公開日2004-08-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase
Nucleic Acids Res., 32, 2004
1SZR
DownloadVisualize
BU of 1szr by Molmil
A Dimer interface mutant of ornithine decarboxylase reveals structure of gem diamine intermediate
分子名称: N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE, Ornithine decarboxylase, ...
著者Jackson, L.K, Baldwin, J, Goldsmith, E.J, Phillips, M.A.
登録日2004-04-06
公開日2004-10-26
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Multiple active site conformations revealed by distant site mutation in ornithine decarboxylase
Biochemistry, 43, 2004
1XQM
DownloadVisualize
BU of 1xqm by Molmil
Variations on the GFP chromophore scaffold: A fragmented 5-membered heterocycle revealed in the 2.1A crystal structure of a non-fluorescent chromoprotein
分子名称: ACETIC ACID, kindling fluorescent protein
著者Wilmann, P.G, Petersen, J, Devenish, R.J, Prescott, M, Rossjohn, J.
登録日2004-10-13
公開日2004-11-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Variations on the GFP chromophore: A polypeptide fragmentation within the chromophore revealed in the 2.1-A crystal structure of a nonfluorescent chromoprotein from Anemonia sulcata
J.Biol.Chem., 280, 2005
1TWB
DownloadVisualize
BU of 1twb by Molmil
SspB disulfide crosslinked to an ssrA degradation tag
分子名称: Stringent starvation protein B homolog, ssrA peptide
著者Bolon, D.N, Grant, R.A, Baker, T.A, Sauer, R.T.
登録日2004-06-30
公開日2004-11-16
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Nucleotide-Dependent Substrate Handoff from the SspB Adaptor to the AAA+ ClpXP Protease.
Mol.Cell, 16, 2004
1XAE
DownloadVisualize
BU of 1xae by Molmil
Crystal structure of wild type yellow fluorescent protein zFP538 from Zoanthus
分子名称: BETA-MERCAPTOETHANOL, fluorescent protein FP538
著者Remington, S.J, Wachter, R.M, Yarbrough, D.K, Branchaud, B, Anderson, D.C, Kallio, K, Lukyanov, K.A.
登録日2004-08-25
公開日2005-02-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore.
Biochemistry, 44, 2005
1XA9
DownloadVisualize
BU of 1xa9 by Molmil
Crystal structure of yellow fluorescent protein zFP538 K66M green mutant
分子名称: BETA-MERCAPTOETHANOL, fluorescent protein FP538
著者Remington, S.J, Wachter, R.M, Yarbrough, D.K, Branchaud, B, Anderson, D.C, Kallio, K, Lukyanov, K.A.
登録日2004-08-25
公開日2005-02-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore.
Biochemistry, 44, 2005
1YHG
DownloadVisualize
BU of 1yhg by Molmil
Uncyclized precursor structure of S65G Y66S V68G GFP variant
分子名称: green fluorescent protein
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-01-07
公開日2005-02-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry.
Biochemistry, 44, 2005
1YHH
DownloadVisualize
BU of 1yhh by Molmil
Uncyclized precursor structure of S65A Y66S G67A GFP variant
分子名称: green fluorescent protein
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-01-07
公開日2005-02-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry.
Biochemistry, 44, 2005
1YHI
DownloadVisualize
BU of 1yhi by Molmil
Uncyclized precursor structure of S65A Y66S R96A GFP variant
分子名称: Green Fluorescent Protein
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-01-08
公開日2005-02-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry(,).
Biochemistry, 44, 2005
1YJ2
DownloadVisualize
BU of 1yj2 by Molmil
Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant
分子名称: 1,2-ETHANEDIOL, Green Fluorescent Protein, MAGNESIUM ION
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-01-13
公開日2005-02-15
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry.
Biochemistry, 44, 2005
1YJF
DownloadVisualize
BU of 1yjf by Molmil
Cyclized post-translational product for S65A Y66S (GFPhal) green fluorescent protein variant
分子名称: Green Fluorescent Protein, MAGNESIUM ION
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-01-14
公開日2005-02-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry.
Biochemistry, 44, 2005
1XMZ
DownloadVisualize
BU of 1xmz by Molmil
Crystal structure of the dark state of kindling fluorescent protein kfp from anemonia sulcata
分子名称: BETA-MERCAPTOETHANOL, GFP-like non-fluorescent chromoprotein FP595 chain 1, GFP-like non-fluorescent chromoprotein FP595 chain 2
著者Quillin, M.L, Anstrom, D.M, Shu, X, O'Leary, S, Kallio, K, Chudakov, D.M, Remington, S.J.
登録日2004-10-04
公開日2005-04-19
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Kindling Fluorescent Protein from Anemonia sulcata: Dark-State Structure at 1.38 Resolution
Biochemistry, 44, 2005
1Z2Q
DownloadVisualize
BU of 1z2q by Molmil
High-resolution solution structure of the LM5-1 FYVE domain from Leishmania major
分子名称: LM5-1
著者Mertens, H.D.T, Callaghan, J.M, McConville, M.J, Gooley, P.R.
登録日2005-03-08
公開日2005-04-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A high-resolution solution structure of a trypanosomatid FYVE domain.
Protein Sci., 16, 2007
1ZD8
DownloadVisualize
BU of 1zd8 by Molmil
Structure of human adenylate kinase 3 like 1
分子名称: GTP:AMP phosphotransferase mitochondrial
著者Choe, J, Atanassova, A, Arrowsmith, C, Edwards, A, Sundstrom, M, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日2005-04-14
公開日2005-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structure of human adenylate kinase 3 like 1
to be published

222036

件を2024-07-03に公開中

PDB statisticsPDBj update infoContact PDBjnumon