PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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6BEO	Solution structure of de novo macrocycle design9.1 分子名称: (DPR)PY(DHI)PKDL(DGN) 著者 Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. 登録日 2017-10-25 公開日 2017-12-27 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BEQ	Solution structure of de novo macrocycle design10.1 分子名称: AAR(DVA)(DPR)R(DLE)(DTH)PE 著者 Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. 登録日 2017-10-25 公開日 2018-01-10 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BE9	Solution structure of de novo macrocycle design7.1 分子名称: T(DLY)NDT(DSG)(DPR) 著者 Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, B. 登録日 2017-10-24 公開日 2017-12-27 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BEU	Solution structure of de novo macrocycle design14_ss 分子名称: (DCY)N(DVA)(DPR)DVYC(DPR)(DSG)KY(DVA)(DPR) 著者 Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. 登録日 2017-10-25 公開日 2017-12-27 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
4RJV	Crystal Structure of a De Novo Designed Ferredoxin Fold, Northeast Structural Genomics Consortium (NESG) Target OR461 分子名称: OR461 著者 O'Connell, P.T, Lin, Y.-R, Guan, R, Koga, N, Koga, R, Seetharaman, J, Janjua, H, Xiao, R, Maglaqui, M, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2014-10-09 公開日 2014-10-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.523 Å) 主引用文献 Northeast Structural Genomics Consortium Target OR461 To be published
8BCT	X-ray crystal structure of a de novo selected helix-loop-helix heterodimer in a syn arrangement, 26alpha/26beta 分子名称: 26alpha, 26beta, ACETATE ION, ... 著者 Naudin, E.A, Mylemans, B, Smith, A.J, Savery, N.J, Woolfson, D.N. 登録日 2022-10-17 公開日 2023-06-07 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Design and Selection of Heterodimerizing Helical Hairpins for Synthetic Biology. Acs Synth Biol, 12, 2023
2KPO	Solution NMR structure of de novo designed rossmann 2x2 fold protein, Northeast Structural Genomics Consortium target OR16 分子名称: rossmann 2x2 fold protein 著者 Liu, G, Koga, R, Koga, N, Xiao, R, Hamilton, K, Ciccosanti, C, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2009-10-17 公開日 2009-12-01 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution NMR structure of denovo designed rossmann 2x2 fold protein, Northeast Structural Genomics Consortium target OR16 To be Published
6V67	Apo Structure of the De Novo PD-1 Binding Miniprotein GR918.2 分子名称: PD-1 Binding Miniprotein GR918.2 著者 Bick, M.J, Bryan, C.M, Baker, D, Dimaio, F, Kang, A. 登録日 2019-12-04 公開日 2020-12-09 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Computational design of a synthetic PD-1 agonist. Proc.Natl.Acad.Sci.USA, 118, 2021
7N2Y	Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing a dual Tris-thiolate Binding Site for Heavy Metal Complexes 分子名称: Apo-(GRAND CoilSerL16CL23C)3, ZINC ION 著者 Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. 登録日 2021-05-30 公開日 2022-06-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Open Reading Frame 1 Protein of the Human Long Interspersed Nuclear Element 1 Retrotransposon Binds Multiple Equivalents of Lead. J.Am.Chem.Soc., 143, 2021
7N2Z	Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing Trigonal Pyrmidal Pb(II) complexes in the dual Tris-thiolate Site 分子名称: CHLORIDE ION, LEAD (II) ION, Pb(II)2-(GRAND CoilSerL16CL23C)3, ... 著者 Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. 登録日 2021-05-30 公開日 2022-06-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Open Reading Frame 1 Protein of the Human Long Interspersed Nuclear Element 1 Retrotransposon Binds Multiple Equivalents of Lead. J.Am.Chem.Soc., 143, 2021
7O1D	A de novo Enzyme for the Morita-Baylis-Hillman Reaction BH32.7 分子名称: BH32.7 protein 著者 Levy, C.W. 登録日 2021-03-29 公開日 2021-11-03 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Engineering an efficient and enantioselective enzyme for the Morita-Baylis-Hillman reaction. Nat.Chem., 14, 2022
4OW4	Beta-trefoil designed by folding nucleus symmetric expansion ("Phifoil") 分子名称: Beta-terfoil designed by folding nucleus symmetric expansion ("Phifoil"), SULFATE ION 著者 Blaber, M, Longo, L.M. 登録日 2014-01-31 公開日 2014-12-17 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.148 Å) 主引用文献 Evolution and design of protein structure by folding nucleus symmetric expansion. Structure, 22, 2014
7MWQ	Structure of De Novo designed beta sheet heterodimer LHD29A53/B53 分子名称: LHD29A53, LHD29B53 著者 Bera, A.K, Sahtoe, D.D, Kang, A, Praetorius, F, Baker, D. 登録日 2021-05-17 公開日 2022-01-19 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Reconfigurable asymmetric protein assemblies through implicit negative design. Science, 375, 2022
7MWR	Structure of De Novo designed beta sheet heterodimer LHD101A53/B4 分子名称: LHD101A54, LHD101B4, MALONATE ION 著者 Bera, A.K, Sahtoe, D.D, Kang, A, Praetorius, F, Baker, D. 登録日 2021-05-17 公開日 2022-01-19 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Reconfigurable asymmetric protein assemblies through implicit negative design. Science, 375, 2022
5VSG	Fibrils of the super helical repeat peptide, SHR-FF, grown at elevated temperature 分子名称: Super Helical Repeat Peptide SHR-FF 著者 Mondal, S, Sawaya, M.R, Eisenberg, D.S, Gazit, E. 登録日 2017-05-11 公開日 2018-06-27 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Transition of Metastable Cross-alpha Crystals into Cross-beta Fibrils by beta-Turn Flipping. J.Am.Chem.Soc., 141, 2019
5W0J	Antiparallel coiled coil hexamer formed by de novo peptides (ACC-Hex2). 分子名称: CHLORIDE ION, peptide 1 著者 Spencer, R.K, Hochbaum, A.I. 登録日 2017-05-30 公開日 2017-10-04 最終更新日 2022-12-14 実験手法 X-RAY DIFFRACTION (2.201 Å) 主引用文献 The Phe-Ile Zipper: A Specific Interaction Motif Drives Antiparallel Coiled-Coil Hexamer Formation. Biochemistry, 56, 2017
5DZB	6beta1 分子名称: 6beta1 著者 Kabasakal, B.V, MacDonald, J.T, Murray, W.W. 登録日 2015-09-25 公開日 2016-08-31 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.33 Å) 主引用文献 Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension. Proc.Natl.Acad.Sci.USA, 113, 2016
6EGN	Crystal Structure of a Three-stranded Coiled Coil Peptide Containing a Trigonal Planar Hg(II)S3 Site Modified by D-Leu in the Second Coordination Sphere 分子名称: CHLORIDE ION, Hg(II)(GRAND CoilSerL16CL19(DLE))3-, MERCURY (II) ION, ... 著者 Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. 登録日 2018-08-20 公開日 2019-04-03 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation. Chemistry, 25, 2019
5DQA	t3284 loop variant of beta1 分子名称: t3284 著者 Kabasakal, B.V, MacDonald, J.T, Murray, W.W. 登録日 2015-09-14 公開日 2016-08-31 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.27 Å) 主引用文献 Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension. Proc.Natl.Acad.Sci.USA, 113, 2016
6BE7	Solution structure of de novo macrocycle Design8.1 分子名称: DDPT(DPR)(DAR)Q(DGN) 著者 Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. 登録日 2017-10-24 公開日 2018-01-03 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
5SWK	Crystal structure of p53 epitope-scaffold based on a inhibitor of cysteine proteases in complex with human MDM2 分子名称: CHLORIDE ION, De novo protein based on the inhibitor Amoebiasin-1, E3 ubiquitin-protein ligase Mdm2, ... 著者 Jimenez-Sandoval, P, Brieba, L.G. 登録日 2016-08-08 公開日 2017-10-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.923 Å) 主引用文献 Mimicking a p53-MDM2 interaction based on a stable immunoglobulin-like domain scaffold. Proteins, 86, 2018
5DN0	t1555 loop variant 分子名称: beta1 t1555 loop variant 著者 MacDonald, J.T, Kabasakal, B.V, Murray, J.W. 登録日 2015-09-09 公開日 2016-08-31 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (4.4 Å) 主引用文献 Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension. Proc.Natl.Acad.Sci.USA, 113, 2016
2LSE	Solution NMR Structure of De Novo Designed Four Helix Bundle Protein, Northeast Structural Genomics Consortium (NESG) Target OR188 分子名称: Four Helix Bundle Protein 著者 Sathyamoorthy, B, Pulavarti, S, Murphy, G, Mills, J.L, Eletski, A, Der, B.S, Machius, M.C, Kuhlman, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG) 登録日 2012-04-28 公開日 2012-06-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of a Denovo Design Four Helix Bundle Protein, Northeast Structural Genomics Consortium Target OR188 To be Published
4YFO	beta1_ex1 分子名称: beta1_ex1 著者 Murray, J.W, MacDonald, J.T. 登録日 2015-02-25 公開日 2016-03-16 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.39 Å) 主引用文献 Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension. Proc.Natl.Acad.Sci.USA, 113, 2016
4YXY	Computationally designed left-handed alpha/alpha toroid with 9 repeats; two linked rings of 12 repeats each structure 分子名称: dTor_9x31L 著者 Doyle, L, Stoddard, B.L, Bradley, P. 登録日 2015-03-23 公開日 2015-12-16 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.203 Å) 主引用文献 Rational design of alpha-helical tandem repeat proteins with closed architectures. Nature, 528, 2015

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