PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1P6R	Solution structure of the DNA binding domain of the repressor BlaI. 分子名称: Penicillinase repressor 著者 Melckebeke, H.V, Vreuls, C, Gans, P, Llabres, G, Filee, P, Joris, B, Simorre, J.P. 登録日 2003-04-30 公開日 2003-12-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structural study of BlaI: implications for the repression of genes involved in beta-lactam antibiotic resistance. J.Mol.Biol., 333, 2003
4XPC	Crystal structure of 5'- CTTATAAATTTATAAG in a host-guest complex 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*TP*TP*AP*TP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*AP*TP*AP*AP*G)-3'), ... 著者 Georgiadis, M.M, Singh, I. 登録日 2015-01-16 公開日 2015-05-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Structural basis for a six nucleotide genetic alphabet. J. Am. Chem. Soc., 137, 2015
6J9C	Crystal structure of Arabidopsis thaliana transcription factor LEC2-DNA complex 分子名称: B3 domain-containing transcription factor LEC2, DNA (5'-D(*CP*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*T)-3') 著者 Hu, H, Du, J. 登録日 2019-01-22 公開日 2019-05-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.102 Å) 主引用文献 Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis. Nat.Plants, 5, 2019
4XPE	Crystal structure of 5'-CTTATGGGCCCATAAG in a host-guest complex 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*TP*TP*AP*TP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*AP*TP*AP*AP*G)-3'), ... 著者 Georgiadis, M.M, Singh, I. 登録日 2015-01-16 公開日 2015-05-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Structural basis for a six nucleotide genetic alphabet. J. Am. Chem. Soc., 137, 2015
6J9B	Arabidopsis FUS3-DNA complex 分子名称: B3 domain-containing transcription factor FUS3, DNA (5'-D(*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*TP*C)-3'), DNA (5'-D(*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*TP*G)-3') 著者 Hu, H, Du, J. 登録日 2019-01-22 公開日 2019-05-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis. Nat.Plants, 5, 2019
4YM5	Crystal structure of the human nucleosome containing 6-4PP (inside) 分子名称: 144 mer-DNA, 144-mer DNA, Histone H2A type 1-B/E, ... 著者 Osakabe, A, Tachiwana, H, Kagawa, W, Horikoshi, N, Matsumoto, S, Hasegawa, M, Matsumoto, N, Toga, T, Yamamoto, J, Hanaoka, F, Thoma, N.H, Sugasawa, K, Iwai, S, Kurumizaka, H. 登録日 2015-03-06 公開日 2015-12-02 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (4.005 Å) 主引用文献 Structural basis of pyrimidine-pyrimidone (6-4) photoproduct recognition by UV-DDB in the nucleosome Sci Rep, 5, 2015
5T5K	Structure of histone-based chromatin in Archaea 分子名称: CACODYLATE ION, DNA (90-MER), DNA-binding protein HMf-2 著者 Bhattacharyya, S, Mattiroli, F, Dyer, P.N, Sandman, K, Reeve, J.N, Luger, K. 登録日 2016-08-31 公開日 2017-08-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Structure of histone-based chromatin in Archaea. Science, 357, 2017
7C9C	Human DMC1 pre-synaptic complexes 分子名称: CALCIUM ION, DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Meiotic recombination protein DMC1/LIM15 homolog, ... 著者 Luo, S.C, Yeh, H.Y, Chi, P, Ho, M.C, Tsai, M.D. 登録日 2020-06-05 公開日 2020-11-25 最終更新日 2021-01-27 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures. Nat Commun, 12, 2021
7C98	Human DMC1 post-synaptic complexes 分子名称: CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ... 著者 Luo, S.C, Yeh, H.Y, Chi, P, Ho, M.C, Tsai, M.D. 登録日 2020-06-05 公開日 2020-11-18 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.47 Å) 主引用文献 Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures. Nat Commun, 12, 2021
7VVU	NuA4 HAT module bound to the nucleosome 分子名称: CARBOXYMETHYL COENZYME *A, Chromatin modification-related protein EAF6, Chromatin modification-related protein YNG2, ... 著者 Chen, Z, Qu, K. 登録日 2021-11-09 公開日 2022-08-10 最終更新日 2022-11-16 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of the NuA4 acetyltransferase complex bound to the nucleosome. Nature, 610, 2022
7VVZ	NuA4 bound to the nucleosome 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, Actin-related protein 4, ... 著者 Qu, K, Chen, Z. 登録日 2021-11-09 公開日 2022-08-10 最終更新日 2022-11-16 実験手法 ELECTRON MICROSCOPY (8.8 Å) 主引用文献 Structure of the NuA4 acetyltransferase complex bound to the nucleosome. Nature, 610, 2022
3LEL	Structural Insight into the Sequence-Dependence of Nucleosome Positioning 分子名称: 147-MER DNA, Histone H2A, Histone H2B 1.1, ... 著者 Wu, B, Vasudevan, D, Davey, C.A. 登録日 2010-01-15 公開日 2010-05-19 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structural insight into the sequence dependence of nucleosome positioning Structure, 18, 2010
2BJ8	NIKR IN CLOSED CONFORMATION AND NICKEL BOUND TO HIGH and LOW-AFFINITY SITES 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ... 著者 Tahirov, T.H. 登録日 2005-01-31 公開日 2005-04-08 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition J.Mol.Biol., 348, 2005
2BJ9	NIKR with bound NICKEL and phosphate 分子名称: NICKEL (II) ION, NICKEL RESPONSIVE REGULATOR, PHOSPHATE ION, ... 著者 Tahirov, T.H, Chivers, P.T. 登録日 2005-01-31 公開日 2005-04-08 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition J.Mol.Biol., 348, 2005
2BJ7	NIKR IN CLOSED CONFORMATION AND NICKEL BOUND TO HIGH-AFFINITY SITES 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, NICKEL (II) ION, ... 著者 Tahirov, T.H. 登録日 2005-01-31 公開日 2005-04-08 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition J.Mol.Biol., 348, 2005
5IWM	2.5A structure of GSK945237 with S.aureus DNA gyrase and DNA. 分子名称: (1R)-1-[(4-{[(6,7-dihydro[1,4]dioxino[2,3-c]pyridazin-3-yl)methyl]amino}piperidin-1-yl)methyl]-9-fluoro-1,2-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-4-one, DNA (5'-D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*TP*TP*CP*AP*CP*CP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*GP*GP*TP*GP*AP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), ... 著者 Bax, B.D, Miles, T.J. 登録日 2016-03-22 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Novel tricyclics (e.g., GSK945237) as potent inhibitors of bacterial type IIA topoisomerases. Bioorg.Med.Chem.Lett., 26, 2016
7OTJ	Crystal structure of Pif1 helicase from Candida albicans 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase PIF1, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), ... 著者 Rety, S, Xi, X.G. 登録日 2021-06-10 公開日 2021-07-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Structural study of the function of Candida Albicans Pif1. Biochem.Biophys.Res.Commun., 567, 2021
7PII	Structure of the human CCAN CENP-A alpha-satellite complex 分子名称: Centromere protein C, DNA (122-MER), DNA (123-MER), ... 著者 Yatskevich, S, Muir, K.W, Bellini, D, Barford, D. 登録日 2021-08-19 公開日 2022-05-25 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.68 Å) 主引用文献 Structure of the human inner kinetochore bound to a centromeric CENP-A nucleosome. Science, 376, 2022
2BJ1	NIKR IN OPEN CONFORMATION AND NICKEL BOUND TO HIGH-AFFINITY SITES 分子名称: CHLORIDE ION, NICKEL (II) ION, NICKEL RESPONSIVE REGULATOR 著者 Tahirov, T.H. 登録日 2005-01-27 公開日 2005-04-08 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition J.Mol.Biol., 348, 2005
8DD7	The Cryo-EM structure of Drosophila Cryptochrome in complex with Timeless 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Methylated-DNA--protein-cysteine methyltransferase,Cryptochrome-1 fusion, Protein timeless,Methylated-DNA--protein-cysteine methyltransferase fusion 著者 Feng, S, Lin, C, DeOliveira, C.C, Crane, B.R. 登録日 2022-06-17 公開日 2023-02-15 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryptochrome-Timeless structure reveals circadian clock timing mechanisms. Nature, 617, 2023
2W57	Crystal structure of the Vibrio cholerae ferric uptake regulator (Fur) reveals structural rearrangement of the DNA-binding domains 分子名称: FERRIC UPTAKE REGULATION PROTEIN, ZINC ION 著者 Sheikh, M.A, Taylor, G.L. 登録日 2008-12-05 公開日 2009-01-20 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structure of the Vibrio Cholerae Ferric Uptake Regulator (Fur) Reveals Insights Into Metal Co-Ordination. Mol.Microbiol., 72, 2009
3B6F	Nucleosome core particle treated with cisplatin 分子名称: 147-MER DNA, Histone H2A, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2007-10-29 公開日 2007-12-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Site selectivity of platinum anticancer therapeutics Nat.Chem.Biol., 4, 2008
5T2O	Engineered variant of I-OnuI meganuclease targeting the Anopheles AGAP011377 gene; harbors 53 point mutations relative to wild-type I-OnuI 分子名称: CALCIUM ION, DNA (26-MER), I-OnuI_e-ag011377 著者 Stoddard, B.L, Werther, R. 登録日 2016-08-23 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 Crystallographic analyses illustrate significant plasticity and efficient recoding of meganuclease target specificity. Nucleic Acids Res., 45, 2017
5T2H	Engineered variant of I-OnuI meganuclease targeting the Human TCRa gene; harbors 43 point mutations relative to wild-type I-OnuI 分子名称: CALCIUM ION, DNA (26-MER), I-OnuI_e-hTCRa 著者 Stoddard, B.L, Werther, R. 登録日 2016-08-23 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.517 Å) 主引用文献 Crystallographic analyses illustrate significant plasticity and efficient recoding of meganuclease target specificity. Nucleic Acids Res., 45, 2017
5T2N	Engineered variant of I-OnuI meganuclease targeting the Anopheles AGAP007280 gene; harbors 38 point mutations relative to wild-type I-OnuI 分子名称: CALCIUM ION, DNA (26-MER), I-OnuI_e-ag007820 著者 Stoddard, B.L, Werther, R. 登録日 2016-08-23 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.079 Å) 主引用文献 Crystallographic analyses illustrate significant plasticity and efficient recoding of meganuclease target specificity. Nucleic Acids Res., 45, 2017

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