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7U0I
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Structure of LIN28b nucleosome bound 2 OCT4
分子名称: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
著者Tengfei, L, Guan, R, Bai, Y.
登録日2022-02-18
公開日2023-06-28
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structural mechanism of LIN28B nucleosome targeting by OCT4.
Mol.Cell, 83, 2023
7U0J
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BU of 7u0j by Molmil
Structure of 162bp LIN28b nucleosome
分子名称: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
著者Lian, T, Guan, R, Bai, Y.
登録日2022-02-18
公開日2023-06-28
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural mechanism of LIN28B nucleosome targeting by OCT4.
Mol.Cell, 83, 2023
6V2K
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BU of 6v2k by Molmil
The nucleosome structure after H2A-H2B exchange
分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A, ...
著者Arimura, Y, Hirano, R, Kurumizaka, H.
登録日2019-11-24
公開日2020-11-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome.
Commun Biol, 4, 2021
3R9L
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BU of 3r9l by Molmil
Crystal structure of nucleoside diphosphate kinase from Giardia lamblia featuring a disordered dinucleotide binding site
分子名称: CHLORIDE ION, Nucleoside diphosphate kinase
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2011-03-25
公開日2011-04-20
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Crystal structure of nucleoside diphosphate kinase from Giardia lamblia featuring a disordered dinucleotide binding site
To be Published
1MNS
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ON THE ROLE OF LYSINE 166 IN THE MECHANISM OF MANDELATE RACEMASE FROM PSEUDOMONAS PUTIDA: MECHANISTIC AND CRYSTALLOGRAPHIC EVIDENCE FOR STEREOSPECIFIC ALKYLATION BY (R)-ALPHA-PHENYLGLYCIDATE
分子名称: ATROLACTIC ACID (2-PHENYL-LACTIC ACID), MAGNESIUM ION, MANDELATE RACEMASE
著者Neidhart, D.J, Landro, J.A, Kozarich, J.W.
登録日1993-07-06
公開日1993-10-31
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate.
Biochemistry, 33, 1994
1MDR
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BU of 1mdr by Molmil
THE ROLE OF LYSINE 166 IN THE MECHANISM OF MANDELATE RACEMASE FROM PSEUDOMONAS PUTIDA: MECHANISTIC AND CRYSTALLOGRAPHIC EVIDENCE FOR STEREOSPECIFIC ALKYLATION BY (R)-ALPHA-PHENYLGLYCIDATE
分子名称: ATROLACTIC ACID (2-PHENYL-LACTIC ACID), MAGNESIUM ION, MANDELATE RACEMASE
著者Landro, J.A, Gerlt, J.A, Kozarich, J.W, Koo, C.W, Shah, V.J, Kenyon, G.L, Neidhart, D.J, Fujita, S, Petsko, G.A.
登録日1993-11-19
公開日1994-08-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate.
Biochemistry, 33, 1994
3MVD
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BU of 3mvd by Molmil
Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle
分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Makde, R.D, England, J.R, Yennawar, H.P, Tan, S.
登録日2010-05-04
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of RCC1 chromatin factor bound to the nucleosome core particle.
Nature, 467, 2010
3JB9
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Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Yan, C, Hang, J, Wan, R, Huang, M, Wong, C, Shi, Y.
登録日2015-08-09
公開日2015-09-23
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure of a yeast spliceosome at 3.6-angstrom resolution
Science, 349, 2015
8DU4
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Complex between RbBP5-WDR5 and an H2B-ubiquitinated nucleosome
分子名称: 601 DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Niklas, H.A, Rahman, S, Worden, E.J, Wolberger, C.
登録日2022-07-26
公開日2022-09-21
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome.
Proc.Natl.Acad.Sci.USA, 119, 2022
3KUY
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BU of 3kuy by Molmil
DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent
分子名称: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ...
著者Wu, B, Davey, C.A.
登録日2009-11-28
公開日2010-01-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent
Nucleic Acids Res., 38, 2010
3LJA
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Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome
分子名称: 147mer DNA, Histone H2A, Histone H2B 1.1, ...
著者Wu, B, Davey, C.A.
登録日2010-01-26
公開日2010-04-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome
J.Mol.Biol., 398, 2010
6UPH
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Structure of a Yeast Centromeric Nucleosome at 2.7 Angstrom resolution
分子名称: DNA (119-MER), Histone H2A, Histone H2B.1, ...
著者Migl, D, Kschonsak, M, Arthur, C.P, Khin, Y, Harrison, S.C, Ciferri, C, Dimitrova, Y.N.
登録日2019-10-17
公開日2019-11-06
最終更新日2025-05-14
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Cryoelectron Microscopy Structure of a Yeast Centromeric Nucleosome at 2.7 angstrom Resolution.
Structure, 28, 2020
8EVJ
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CX3CR1 nucleosome bound PU.1 and C/EBPa
分子名称: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
著者Guan, R, Bai, Y, Lian, T.
登録日2022-10-20
公開日2023-11-01
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 31, 2024
8EVI
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CX3CR1 nucleosome and PU.1 complex containing disulfide bond mutations
分子名称: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
著者Lian, T, Guan, R, Bai, Y.
登録日2022-10-20
公開日2023-11-01
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.64 Å)
主引用文献Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 31, 2024
8EVH
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CX3CR1 nucleosome and wild type PU.1 complex
分子名称: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
著者Lian, T, Guan, R, Bai, Y.
登録日2022-10-20
公開日2023-11-01
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 31, 2024
8DK5
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Structure of 187bp LIN28b nucleosome with site 0 mutation
分子名称: DNA (187-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
著者Lian, T, Guan, R, Bai, Y.
登録日2022-07-02
公開日2023-06-28
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (2.71 Å)
主引用文献Structural mechanism of LIN28B nucleosome targeting by OCT4.
Mol.Cell, 83, 2023
8COM
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Structure of the Nucleosome Core Particle from Trypanosoma brucei
分子名称: Histone H2A, Histone H2B, Histone H3, ...
著者Burdett, H, Deak, G, Wilson, M.D.
登録日2023-02-28
公開日2023-07-12
最終更新日2023-09-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Histone divergence in trypanosomes results in unique alterations to nucleosome structure.
Nucleic Acids Res., 51, 2023
6VYP
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Crystal structure of the LSD1/CoREST histone demethylase bound to its nucleosome substrate
分子名称: DNA (191-MER), FLAVIN-ADENINE DINUCLEOTIDE, Histone H2A type 1, ...
著者Kim, S, Zhu, J, Eek, P, Yennawar, N, Song, T.
登録日2020-02-27
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (4.99 Å)
主引用文献Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate.
Mol.Cell, 78, 2020
7UD5
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Complex between MLL1-WRAD and an H2B-ubiquitinated nucleosome
分子名称: 601 DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Niklas, H.A, Rahman, S, Worden, E.J, Wolberger, C.
登録日2022-03-18
公開日2022-09-21
最終更新日2024-12-25
実験手法ELECTRON MICROSCOPY (4.25 Å)
主引用文献Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome.
Proc.Natl.Acad.Sci.USA, 119, 2022
3W98
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BU of 3w98 by Molmil
Crystal Structure of Human Nucleosome Core Particle lacking H3.1 N-terminal region
分子名称: 146-mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Iwasaki, W, Miya, Y, Horikoshi, N, Osakabe, A, Tachiwana, H, Shibata, T, Kagawa, W, Kurumizaka, H.
登録日2013-04-01
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.42 Å)
主引用文献Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
1MJ3
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BU of 1mj3 by Molmil
Crystal Structure Analysis of rat enoyl-CoA hydratase in complex with hexadienoyl-CoA
分子名称: ENOYL-COA HYDRATASE, MITOCHONDRIAL, HEXANOYL-COENZYME A
著者Bell, A.F, Feng, Y, Hofstein, H.A, Parikh, S, Wu, J, Rudolph, M.J, Kisker, C, Tonge, P.J.
登録日2002-08-26
公開日2002-09-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Stereoselectivity of Enoyl-CoA Hydratase Results from Preferential Activation of One of Two Bound Substrate Conformers
Chem.Biol., 9, 2002
3W99
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Crystal Structure of Human Nucleosome Core Particle lacking H4 N-terminal region
分子名称: 146-mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Iwasaki, W, Miya, Y, Horikoshi, N, Osakabe, A, Tachiwana, H, Shibata, T, Kagawa, W, Kurumizaka, H.
登録日2013-04-01
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
1E7K
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Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
分子名称: 15.5 KD RNA BINDING PROTEIN, RNA (5'-R(*GP*CP*CP*AP*AP*UP*GP*AP*GP*GP*UP*UP*UP* AP*UP*CP*CP*GP*AP*GP*G*C(-3')
著者Vidovic, I, Nottrott, S, Harthmuth, K, Luhrmann, R, Ficner, R.
登録日2000-08-29
公開日2001-02-19
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of the Spliceosomal 15.5Kd Protein Bound to a U4 Snrna Fragment
Mol.Cell, 6, 2000
3HW4
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Crystal structure of avian influenza A virus in complex with TMP
分子名称: MAGNESIUM ION, Polymerase acidic protein, THYMIDINE-5'-PHOSPHATE
著者Zhao, C, Lou, Z, Guo, Y, Ma, M, Chen, Y, Rao, Z.
登録日2009-06-17
公開日2009-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Nucleoside monophosphate complex structures of the endonuclease domain from the influenza virus polymerase PA subunit reveal the substrate binding site inside the catalytic center
J.Virol., 83, 2009
3HW5
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crystal structure of avian influenza virus PA_N in complex with AMP
分子名称: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, Polymerase acidic protein
著者Zhao, C, Lou, Z, Guo, Y, Ma, M, Chen, Y, Liang, S, Rao, Z.
登録日2009-06-17
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Nucleoside monophosphate complex structures of the endonuclease domain from the influenza virus polymerase PA subunit reveal the substrate binding site inside the catalytic center
J.Virol., 83, 2009

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