PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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8YGG	pP1192R-apo Closed state 分子名称: DNA topoisomerase 2 著者 Sun, J.Q, Liu, R.L. 登録日 2024-02-26 公開日 2024-09-18 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Structural basis for difunctional mechanism of m-AMSA against African swine fever virus pP1192R. Nucleic Acids Res., 2024
5DEU	Crystal structure of TET2-5hmC complex 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, DNA (5'-D(*AP*CP*CP*AP*CP*(5HC)P*GP*GP*TP*GP*GP*T)-3'), ... 著者 Hu, L, Cheng, J, Rao, Q, Li, Z, Li, J, Xu, Y. 登録日 2015-08-26 公開日 2015-11-04 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.801 Å) 主引用文献 Structural insight into substrate preference for TET-mediated oxidation. Nature, 527, 2015
7VZ4	Cryo-EM structure of human nucleosome core particle composed of the Widom 601L DNA sequence 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Takizawa, Y, Ho, C.-H, Sato, S, Danev, R, Kurumizaka, H. 登録日 2021-11-15 公開日 2023-05-17 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (1.89 Å) 主引用文献 Methods for High Resolution Cryo-EM Analyses of Nucleosomes To Be Published
1CR0	CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE4 PROTEIN OF BACTERIOPHAGE T7 分子名称: DNA PRIMASE/HELICASE, SULFATE ION 著者 Sawaya, M.R, Guo, S, Tabor, S, Richardson, C.C, Ellenberger, T. 登録日 1999-08-12 公開日 1999-11-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7. Cell(Cambridge,Mass.), 99, 1999
7LV8	Structure of the Marseillevirus nucleosome 分子名称: DNA (123-MER), Histone doublet Beta-Alpha (Alpha), Histone doublet Beta-Alpha (Beta), ... 著者 Valencia-Sanchez, M.I, Abini-Agbomson, S, Armache, K.-J. 登録日 2021-02-24 公開日 2021-05-05 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 The structure of a virus-encoded nucleosome. Nat.Struct.Mol.Biol., 28, 2021
8J91	Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones 分子名称: DNA (169-MER), HTA13, Histone H2B.6, ... 著者 Osakabe, A, Takizawa, Y, Horikoshi, N, Hatazawa, S, Berger, F, Kurumizaka, H, Kakutani, T. 登録日 2023-05-02 公開日 2024-07-03 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Molecular and structural basis of the chromatin remodeling activity by Arabidopsis DDM1. Nat Commun, 15, 2024
1AG3	DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*AP*TP*CP*GP*CP*PP*CP*GP*GP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*GP*CP*CP*GP*CP*GP*AP*T)-3') 著者 Weisenseel, J.P, Stone, M.P. 登録日 1997-03-31 公開日 1997-07-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of a duplex oligodeoxynucleotide containing propanodeoxyguanosine opposite a two-base deletion in the (CpG)3 frame shift hotspot of Salmonella typhimurium hisD3052 determined by 1H NMR and restrained molecular dynamics. Biochemistry, 34, 1995
2RVB	Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain 分子名称: DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1 著者 Okuda, M, Nishimura, Y. 登録日 2015-07-01 公開日 2015-09-09 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC. Structure, 23, 2015
2IZO	Structure of an Archaeal PCNA1-PCNA2-FEN1 Complex 分子名称: DNA POLYMERASE SLIDING CLAMP B, DNA POLYMERASE SLIDING CLAMP C, FLAP STRUCTURE-SPECIFIC ENDONUCLEASE, ... 著者 Dore, A.S, Kilkenny, M.L, Roe, S.M, Pearl, L.H. 登録日 2006-07-25 公開日 2006-09-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of an Archaeal PCNA1-PCNA2-Fen1 Complex: Elucidating PCNA Subunit and Client Enzyme Specificity. Nucleic Acids Res., 34, 2006
1D42	SOLUTION STRUCTURE OF [D(GTATATAC)]2 VIA RESTRAINED MOLECULAR DYNAMICS SIMULATIONS WITH NUCLEAR MAGNETIC RESONANCE CONSTRAINTS DERIVED FROM RELAXATION MATRIX ANALYSIS OF TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT EXPERIMENTS 分子名称: DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3') 著者 Schmitz, U, James, T.L. 登録日 1991-05-15 公開日 1993-04-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments. J.Mol.Biol., 221, 1991
8D7U	Cereblon~DDB1 bound to CC-92480 with DDB1 in the linear conformation 分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ... 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7Y	Cereblon-DDB1 in the Apo form with DDB1 in the twisted conformation 分子名称: DNA damage-binding protein 1, Protein cereblon, ZINC ION 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7W	Cereblon~DDB1 bound to CC-92480 with DDB1 in the hinged conformation 分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ... 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7X	Cereblon~DDB1 in the Apo form with DDB1 in the hinged conformation 分子名称: DNA damage-binding protein 1, Protein cereblon, ZINC ION 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8CVP	Cereblon-DDB1 in the Apo form 分子名称: DNA damage-binding protein 1, Protein cereblon, ZINC ION 著者 Watson, E.R, Lander, G.C. 登録日 2022-05-18 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7V	Cereblon~DDB1 bound to CC-92480 with DDB1 in the twisted conformation 分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ... 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
1GHH	SOLUTION STRUCTURE OF DINI 分子名称: DNA-DAMAGE-INDUCIBLE PROTEIN I 著者 Ramirez, B.E, Voloshin, O.N, Camerini-Otero, R.D, Bax, A. 登録日 2000-12-19 公開日 2001-01-10 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure of DinI provides insight into its mode of RecA inactivation. Protein Sci., 9, 2000
1D90	REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH I.T MISMATCHED BASE PAIRS 分子名称: DNA (5'-D(*GP*GP*IP*GP*CP*TP*CP*C)-3') 著者 Cruse, W.B.T, Aymani, J, Kennard, O, Brown, T, Jack, A.G.C, Leonard, G.A. 登録日 1992-10-17 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Refined crystal structure of an octanucleotide duplex with I.T. mismatched base pairs. Nucleic Acids Res., 17, 1989
1D9H	Structural origins of the exonuclease resistance of a zwitterionic RNA 分子名称: DNA/RNA (5'-D(*GP*CP*GP*TP*AP)-R(*(U31)P)-D(*AP*CP*GP*C)-3') 著者 Teplova, M, Wallace, S.T, Tereshko, V, Minasov, G, Simons, A.M, Cook, P.D, Manoharan, M, Egli, M. 登録日 1999-10-27 公開日 1999-12-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural origins of the exonuclease resistance of a zwitterionic RNA Proc.Natl.Acad.Sci.USA, 96, 1999
4Q0R	The catalytic core of Rad2 (complex I) 分子名称: DNA (5'-D(*CP*TP*GP*AP*GP*TP*CP*AP*GP*AP*GP*CP*AP*AP*A)-3'), DNA repair protein RAD2 著者 Mietus, M, Nowak, E, Jaciuk, M, Kustosz, P, Nowotny, M. 登録日 2014-04-02 公開日 2014-08-27 最終更新日 2017-08-09 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding. Nucleic Acids Res., 42, 2014
1MSZ	Solution structure of the R3H domain from human Smubp-2 分子名称: DNA-binding protein SMUBP-2 著者 Liepinsh, E, Leonchiks, A, Sharipo, A, Guignard, L, Otting, G. 登録日 2002-09-20 公開日 2002-10-09 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the R3H domain from human Smubp-2 J.Mol.Biol., 326, 2003
6RR9	DNA/RNA binding protein 分子名称: GLYCEROL, SULFATE ION, Schlafen family member 5, ... 著者 Huber, E, Lammens, K. 登録日 2019-05-17 公開日 2020-07-08 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (3.432 Å) 主引用文献 Structural and biochemical characterization of human Schlafen 5. Nucleic Acids Res., 2022
7VBM	The mouse nucleosome structure containing H3mm18 aided by PL2-6 scFv 分子名称: DNA (126-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Hirai, S, Takizawa, Y, Kujirai, T, Kurumizaka, H. 登録日 2021-08-31 公開日 2022-01-19 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant. Nucleic Acids Res., 50, 2022
317D	STRUCTURE OF D(CCTAGGG): COMPARISON WITH NINE ISOMORPHOUS OCTAMER SEQUENCES REVEALS FOUR DISTINCT PATTERNS OF SEQUENCE-DEPENDENT INTERMOLECULAR INTERACTIONS 分子名称: DNA (5'-D(*CP*CP*CP*TP*AP*GP*GP*G)-3') 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of d(CCCTAGGG): comparison with nine isomorphous octamer sequences reveals four distinct patterns of sequence-dependent intermolecular interactions. Acta Crystallogr.,Sect.D, 52, 1996
4A11	Structure of the hsDDB1-hsCSA complex 分子名称: DNA DAMAGE-BINDING PROTEIN 1, DNA EXCISION REPAIR PROTEIN ERCC-8 著者 Bohm, K, Scrima, A, Fischer, E.S, Gut, H, Thomae, N.H. 登録日 2011-09-13 公開日 2011-12-07 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.31 Å) 主引用文献 The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation. Cell(Cambridge,Mass.), 147, 2011

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