PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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1B3T	EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX 分子名称: DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3'), PROTEIN (NUCLEAR PROTEIN EBNA1) 著者 Bochkarev, A, Bochkareva, E, Edwards, A, Frappier, L. 登録日 1998-12-14 公開日 1998-12-15 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1. J.Mol.Biol., 284, 1998
8EFC	Structure of Lates calcarifer DNA polymerase theta polymerase domain with long duplex DNA, complex Ia 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*CP*TP*GP*TP*GP*AP*GP*GP*CP*AP*TP*CP*CP*GP*TP*AP*GP*(2DA))-3'), DNA (5'-D(*AP*GP*CP*TP*CP*TP*AP*CP*GP*GP*AP*TP*GP*CP*CP*TP*CP*AP*CP*AP*G)-3'), ... 著者 Li, C, Zhu, H, Sun, J, Gao, Y. 登録日 2022-09-08 公開日 2022-12-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis of DNA polymerase theta mediated DNA end joining. Nucleic Acids Res., 51, 2023
1LQ1	DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria 分子名称: 5'-D(*AP*CP*AP*AP*AP*AP*TP*TP*CP*GP*AP*CP*AP*CP*GP*A)-3', 5'-D(*TP*TP*CP*GP*TP*GP*TP*CP*GP*AP*AP*TP*TP*TP*TP*G)-3', Stage 0 sporulation protein A 著者 Zhao, H, Msadek, T, Zapf, J, Madhusudan, Hoch, J.A, Varughese, K.I. 登録日 2002-05-08 公開日 2002-08-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 DNA complexed structure of the key transcription factor initiating development in sporulating bacteria. Structure, 10, 2002
5YBD	X-ray structure of ETS domain of Ergp55 in complex with E74DNA 分子名称: DNA (5'-D(P*AP*CP*CP*GP*GP*AP*AP*GP*T)-3'), DNA (5'-D(P*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'), Transcriptional regulator ERG 著者 Saxena, A.K, Gangwar, S.P. 登録日 2017-09-04 公開日 2018-11-14 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.769 Å) 主引用文献 Comparative structure analysis of the ETSi domain of ERG3 and its complex with the E74 promoter DNA sequence Acta Crystallogr F Struct Biol Commun, 74, 2018
1A1I	RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3'), RADR ZIF268 ZINC FINGER PEPTIDE, ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-17 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
5D2S	Crystal structure of STPR from Bombyx mori in complex with 18-bp DNA containing four repetitive units of ATAC 分子名称: DNA (36-MER), Fibroin-modulator-binding protein-1 著者 Cheng, W. 登録日 2015-08-06 公開日 2016-03-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structures of an all-alpha protein running along the DNA major groove. Nucleic Acids Res., 2016
5D2Q	Crystal structure of STPR from Bombyx Mori in complex with 20-bp DNA derived from +290 site of the fibroin gene 分子名称: DNA (40-MER), Fibroin-modulator-binding protein-1 著者 Cheng, W. 登録日 2015-08-06 公開日 2016-03-23 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of an all-alpha protein running along the DNA major groove. Nucleic Acids Res., 2016
1HCP	DNA RECOGNITION BY THE OESTROGEN RECEPTOR: FROM SOLUTION TO THE CRYSTAL 分子名称: HUMAN/CHICKEN ESTROGEN RECEPTOR, ZINC ION 著者 Schwabe, J.W.R, Rhodes, D, Neuhaus, D. 登録日 1993-11-23 公開日 1995-11-23 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 DNA recognition by the oestrogen receptor: from solution to the crystal. Structure, 1, 1993
7TYR	Cryo-EM structure of the basal state of the Artemis:DNA-PKcs complex (see COMPND 13/14) 分子名称: DNA-dependent protein kinase catalytic subunit, Protein artemis 著者 Watanabe, G, Lieber, M.R, Williams, D.R. 登録日 2022-02-14 公開日 2022-07-20 最終更新日 2022-08-03 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Structural analysis of the basal state of the Artemis:DNA-PKcs complex. Nucleic Acids Res., 50, 2022
1A1G	DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3'), DSNR ZINC FINGER PEPTIDE, ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-10 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
1A1L	ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3'), PROTEIN (ZIF268 ZINC FINGER PEPTIDE), ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-17 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
1A1K	RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3'), RADR ZIF268 VARIANT, ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-10 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
5D23	The crystal structure of STPR from Bombyx mori in complex with 13-bp DNA derived from the +290 site of fibroin gene 分子名称: DNA (26-MER), Fibroin-modulator-binding protein-1 著者 Cheng, W. 登録日 2015-08-05 公開日 2016-03-23 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structures of an all-alpha protein running along the DNA major groove. Nucleic Acids Res., 2016
1A1J	RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3'), PROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE), ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-17 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
1A1F	DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3'), THREE-FINGER ZIF268 PEPTIDE, ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-10 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
5XXP	Crystal structure of CbnR_DBD-DNA complex 分子名称: DNA (25-MER), LysR-type regulatory protein 著者 Senda, T, Senda, M. 登録日 2017-07-04 公開日 2018-01-17 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region FEBS J., 285, 2018
1A1H	QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3'), QGSR ZINC FINGER PEPTIDE, ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
5ZKL	Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA dT12 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), SP_0782 著者 Lu, G, Li, S, Zhu, J, Yang, Y, Gong, P. 登録日 2018-03-24 公開日 2019-03-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.951 Å) 主引用文献 Structural insight into the length-dependent binding of ssDNA by SP_0782 from Streptococcus pneumoniae, reveals a divergence in the DNA-binding interface of PC4-like proteins. Nucleic Acids Res., 48, 2020
3FDS	Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DNA polymerase IV, ... 著者 Ling, H. 登録日 2008-11-26 公開日 2009-01-20 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA Mol.Microbiol., 71, 2009
5ZKM	Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA TCTTCC 分子名称: DNA (5'-D(P*TP*CP*TP*TP*CP*C)-3'), SP_0782 著者 Lu, G, Li, S, Zhu, J, Yang, Y, Gong, P. 登録日 2018-03-24 公開日 2019-03-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural insight into the length-dependent binding of ssDNA by SP_0782 from Streptococcus pneumoniae, reveals a divergence in the DNA-binding interface of PC4-like proteins. Nucleic Acids Res., 48, 2020
4E68	Unphosphorylated STAT3B core protein binding to dsDNA 分子名称: DNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3'), Signal transducer and activator of transcription 3 著者 Collie, G.W, Parkinson, G.N, Shah, R. 登録日 2012-03-15 公開日 2013-03-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.585 Å) 主引用文献 Observation of unphosphorylated STAT3 core protein binding to target dsDNA by PEMSA and X-ray crystallography. Febs Lett., 587, 2013
2VWK	Uracil Recognition in Archaeal DNA Polymerases Captured by X-ray Crystallography. V93Q polymerase variant 分子名称: DNA POLYMERASE, SODIUM ION, SULFATE ION 著者 Firbank, S.J, Wardle, J, Heslop, P, Lewis, R.J, Connolly, B.A. 登録日 2008-06-26 公開日 2008-07-22 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Uracil Recognition in Archaeal DNA Polymerases Captured by X-Ray Crystallography. J.Mol.Biol., 381, 2008
1DGS	CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE FROM T. FILIFORMIS 分子名称: ADENOSINE MONOPHOSPHATE, DNA LIGASE, ZINC ION 著者 Lee, J.Y, Chang, C, Song, H.K, Kwon, S.T, Suh, S.W. 登録日 1999-11-25 公開日 2000-11-27 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. EMBO J., 19, 2000
7T23	E. coli DnaB bound to two DnaG C-terminal domains, ssDNA, ADP and AlF4 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA primase, ... 著者 Oakley, A.J, Xu, Z.Q. 登録日 2021-12-02 公開日 2023-01-18 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Sequence of conformation changes of DnaB helicase during DNA unwinding and priming in Escherichia coli To Be Published
3JTG	Crystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA 分子名称: DNA (5'-D(*CP*AP*AP*AP*CP*AP*GP*GP*AP*AP*AP*CP*TP*CP*CP*T)-3'), DNA (5'-D(*GP*AP*GP*GP*AP*GP*TP*TP*TP*CP*CP*TP*GP*TP*TP*T)-3'), ETS-related transcription factor Elf-3 著者 Tahirov, T.H, Babayeva, N.D, Agarkar, V.B, Rizzino, A. 登録日 2009-09-11 公開日 2010-01-12 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA. J.Mol.Biol., 397, 2010

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