PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7K63	Cryo-EM structure of a chromatosome containing chimeric linker histone gH1.10-ncH1.4 分子名称: DNA (197-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Zhou, B.-R, Bai, Y. 登録日 2020-09-18 公開日 2020-11-25 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms. Mol.Cell, 81, 2021
2C2F	Dps from Deinococcus radiodurans 分子名称: DNA-BINDING STRESS RESPONSE PROTEIN, FE (III) ION, GLYCEROL, ... 著者 Romao, C.V, Mitchell, E, McSweeney, S. 登録日 2005-09-28 公開日 2006-07-26 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 The Crystal Structure of Deinococcus Radiodurans Dps Protein (Dr2263) Reveals the Presence of a Novel Metal Centre in the N Terminus. J.Biol.Inorg.Chem., 11, 2006
6BUZ	Cryo-EM structure of CENP-A nucleosome in complex with kinetochore protein CENP-N 分子名称: DNA (147-MER), Histone H2A, Histone H2B, ... 著者 Chittori, S, Hong, J, Kelly, A.E, Bai, Y, Subramaniam, S. 登録日 2017-12-11 公開日 2017-12-20 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.92 Å) 主引用文献 Structural mechanisms of centromeric nucleosome recognition by the kinetochore protein CENP-N. Science, 359, 2018
8OOA	CryoEM Structure INO80core Hexasome complex Hexasome refinement state1 分子名称: DNA Strand 2, DNA strand 1, Histone H2A, ... 著者 Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. 登録日 2023-04-04 公開日 2023-07-26 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
2C2J	Crystal Structure Of The Dps92 From Deinococcus Radiodurans 分子名称: DNA-BINDING STRESS RESPONSE PROTEIN, FE (III) ION, MAGNESIUM ION 著者 Cuypers, M.G, Romao, C.V, Mitchell, E, McSweeney, S. 登録日 2005-09-29 公開日 2007-02-20 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The Crystal Structure of the Dps2 from Deinococcus Radiodurans Reveals an Unusual Pore Profile with a Non-Specific Metal Binding Site. J.Mol.Biol., 371, 2007
4DEZ	Structure of MsDpo4 分子名称: DNA polymerase IV 1 著者 Nair, D.T, Sharma, A. 登録日 2012-01-22 公開日 2012-08-22 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The PAD region in the mycobacterial DinB homologue MsPolIV exhibits positional heterogeneity. Acta Crystallogr.,Sect.D, 68, 2012
3QFQ	Asymmetric Assembly of Merkel Cell Polyomavirus Large T-antigen Origin Binding Domains at the Viral Origin 分子名称: DNA (26-MER), Large T antigen 著者 Harrison, C.J, Meinke, G, Bohm, A. 登録日 2011-01-22 公開日 2011-04-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.9001 Å) 主引用文献 Asymmetric assembly of merkel cell polyomavirus large T-antigen origin binding domains at the viral origin. J.Mol.Biol., 409, 2011
7Q3Z	DNA/RNA binding protein 分子名称: SODIUM ION, Schlafen family member 5, ZINC ION 著者 Huber, E, Lammens, K. 登録日 2021-10-29 公開日 2022-01-26 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural and biochemical characterization of human Schlafen 5. Nucleic Acids Res., 50, 2022
7MXR	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (r-2) 分子名称: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), Exonuclease 1, ... 著者 Shi, Y, Beese, L.S. 登録日 2021-05-19 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.101 Å) 主引用文献 Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published
7MXS	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (cr) 分子名称: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), Exonuclease 1, ... 著者 Shi, Y, Beese, L.S. 登録日 2021-05-19 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.798 Å) 主引用文献 Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published
7MXU	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (cf2) 分子名称: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3'), DNA (5'-D(P*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), Exonuclease 1, ... 著者 Shi, Y, Beese, L.S. 登録日 2021-05-19 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.042 Å) 主引用文献 Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published
7MXV	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (ur) 分子名称: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), Exonuclease 1, ... 著者 Shi, Y, Beese, L.S. 登録日 2021-05-19 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.211 Å) 主引用文献 Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published
7MXT	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (cmr) 分子名称: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), Exonuclease 1, ... 著者 Shi, Y, Beese, L.S. 登録日 2021-05-19 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.048 Å) 主引用文献 Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published
7MXQ	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (r-1) 分子名称: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), Exonuclease 1, ... 著者 Shi, Y, Beese, L.S. 登録日 2021-05-19 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.23 Å) 主引用文献 Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published
6T79	Structure of a human nucleosome at 3.2 A resolution 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... 著者 Dodonova, S.O, Zhu, F, Dienemann, C, Taipale, J, Cramer, P. 登録日 2019-10-21 公開日 2020-04-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function. Nature, 580, 2020
7LYA	Cryo-EM structure of the human nucleosome core particle with linked histone proteins H2A and H2B 分子名称: DNA (146-MER), DNA (147-MER), Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, D, Mer, E, Mer, G. 登録日 2021-03-06 公開日 2021-07-28 最終更新日 2021-09-01 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation. Nature, 596, 2021
4GJR	Crystal structure of the TAL effector dHax3 bound to methylated dsDNA 分子名称: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*TP*AP*GP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*(5CM)P*TP*AP*(5CM)P*CP*TP*CP*(5CM)P*CP*T)-3'), Hax3 著者 Yan, N, Deng, D, Yan, C.Y, Yin, P, Pan, X.J, Shi, Y.G. 登録日 2012-08-10 公開日 2012-10-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structure of a protein complex To be Published
6KIX	Cryo-EM structure of human MLL1-NCP complex, binding mode1 分子名称: DNA (145-MER), GLUTAMINE, Histone H2A, ... 著者 Huang, J, Xue, H, Yao, T. 登録日 2019-07-20 公開日 2019-09-11 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural basis of nucleosome recognition and modification by MLL methyltransferases. Nature, 573, 2019
6KIZ	Cryo-EM structure of human MLL1-NCP complex, binding mode2 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Huang, J, Xue, H, Yao, T. 登録日 2019-07-20 公開日 2019-09-11 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structural basis of nucleosome recognition and modification by MLL methyltransferases. Nature, 573, 2019
6KIV	Cryo-EM structure of human MLL1-ubNCP complex (4.0 angstrom) 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Huang, J, Xue, H, Yao, T. 登録日 2019-07-20 公開日 2019-09-11 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural basis of nucleosome recognition and modification by MLL methyltransferases. Nature, 573, 2019
6KIU	Cryo-EM structure of human MLL1-ubNCP complex (3.2 angstrom) 分子名称: DNA (145-MER), GLUTAMINE, Histone H2A, ... 著者 Huang, J, Xue, H, Yao, T. 登録日 2019-07-20 公開日 2019-09-11 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis of nucleosome recognition and modification by MLL methyltransferases. Nature, 573, 2019
7M1X	Cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z 分子名称: DNA (136-MER), Histone H2A.Z, Histone H2B 1.1, ... 著者 Tan, D, Lewis, T. 登録日 2021-03-15 公開日 2021-09-29 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis of chromatin regulation by histone variant H2A.Z. Nucleic Acids Res., 49, 2021
1D75	CONFORMATION OF THE GUANINE.8-OXOADENINE BASE PAIRS IN THE CRYSTAL STRUCTURE OF D(CGCGAATT(O8A)GCG) 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(A38)P*GP*CP*G)-3') 著者 Leonard, G.A, Guy, A, Brown, T, Teoule, R, Hunter, W.N. 登録日 1992-05-07 公開日 1993-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Conformation of guanine-8-oxoadenine base pairs in the crystal structure of d(CGCGAATT(O8A)GCG). Biochemistry, 31, 1992
2NOV	Breakage-reunion domain of S.pneumoniae topo IV: crystal structure of a gram-positive quinolone target 分子名称: DNA topoisomerase 4 subunit A 著者 Laponogov, I, Veselkov, D.A, Sohi, M.K, Pan, X.S, Achari, A, Yang, C, Ferrara, J.D, Fisher, L.M, Sanderson, M.R. 登録日 2006-10-26 公開日 2006-11-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 Breakage-Reunion Domain of Streptococcus pneumoniae Topoisomerase IV: Crystal Structure of a Gram-Positive Quinolone Target. PLoS ONE, 2, 2007
1VOL	TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX 分子名称: DNA (5'-D(*CP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)-3'), PROTEIN (TATA BINDING PROTEIN (TBP)), ... 著者 Nikolov, D.B, Chen, H, Halay, E.D, Usheva, A.U, Hisatake, K, Lee, D.K, Roeder, R.G, Burley, S.K. 登録日 1996-04-29 公開日 1996-11-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature, 377, 1995

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