PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8GUK	Human nucleosome core particle (free form) 分子名称: DNA (147-mer), Histone H2A type 1, Histone H2B type 1-J, ... 著者 Onishi, S, Sato, K, Nishizawa, T, Nureki, O, Ogata, K, Sengoku, T. 登録日 2022-09-12 公開日 2023-09-20 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (2.51 Å) 主引用文献 Structure of the human Bre1 complex bound to the nucleosome. Nat Commun, 15, 2024
2ORH	Directing Macromolecular Conformation Through Halogen Bonds 分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(DU)P*CP*GP*G)-3'), SODIUM ION 著者 Voth, A.R, Hays, F.A, Ho, P.S. 登録日 2007-02-02 公開日 2007-03-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Directing macromolecular conformation through halogen bonds. Proc.Natl.Acad.Sci.Usa, 104, 2007
2ORF	Directing Macromolecular Conformation Through Halogen Bonds 分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3'), SODIUM ION 著者 Voth, A.R, Hays, F.A, Ho, P.S. 登録日 2007-02-02 公開日 2007-03-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Directing macromolecular conformation through halogen bonds. Proc.Natl.Acad.Sci.Usa, 104, 2007
8J12	Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex 分子名称: DNA (38-MER), MAGNESIUM ION, RNA (247-MER), ... 著者 Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. 登録日 2023-04-12 公開日 2023-09-27 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Minimal and most efficient genome editing Cas enzyme To Be Published
4GNX	Structure of U. maydis Replication protein A bound to ssDNA 分子名称: DNA (25-MER), Putative uncharacterized protein, ZINC ION 著者 Pavletich, N.P, Fan, J. 登録日 2012-08-17 公開日 2013-02-20 最終更新日 2013-07-24 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of To be Published
8VFX	Cryo-EM structure of 186bp ALBN1 nucleosome aided by scFv 分子名称: DNA (158-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Zhou, B.R, Bai, Y. 登録日 2023-12-22 公開日 2024-08-07 最終更新日 2024-09-04 実験手法 ELECTRON MICROSCOPY (2.65 Å) 主引用文献 Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4. Mol.Cell, 84, 2024
7CRP	NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (1:1 binding mode) 分子名称: DNA (168-MER), Histone H2A, Histone H2B, ... 著者 Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z. 登録日 2020-08-14 公開日 2020-10-21 最終更新日 2021-03-03 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases. Nature, 590, 2021
8VG0	Cryo-EM structure of GATA4 in complex with ALBN1 nucleosome 分子名称: DNA (159-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Zhou, B.R, Bai, Y. 登録日 2023-12-22 公開日 2024-08-07 最終更新日 2024-09-04 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4. Mol.Cell, 84, 2024
5WE0	Structural Basis for Shelterin Bridge Assembly 分子名称: DNA-binding protein rap1, Protection of telomeres protein poz1, Protection of telomeres protein tpz1, ... 著者 Kim, J.-K, Liu, J, Hu, X, Yu, C, Roskamp, K, Sankaran, B, Huang, L, Komives, E.-A, Qiao, F. 登録日 2017-07-06 公開日 2017-12-20 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Basis for Shelterin Bridge Assembly. Mol. Cell, 68, 2017
5X0X	Complex of Snf2-Nucleosome complex with Snf2 bound to position +6 of the nucleosome 分子名称: DNA (167-MER), Histone H2A, Histone H2B 1.1, ... 著者 Li, M, Liu, X, Xia, X, Chen, Z, Li, X. 登録日 2017-01-23 公開日 2017-04-19 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.97 Å) 主引用文献 Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure. Nature, 544, 2017
5X0Y	Complex of Snf2-Nucleosome complex with Snf2 bound to SHL2 of the nucleosome 分子名称: DNA (167-MER), Histone H2A, Histone H2B 1.1, ... 著者 Li, M, Liu, X, Xia, X, Chen, Z, Li, X. 登録日 2017-01-23 公開日 2017-04-19 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.69 Å) 主引用文献 Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure. Nature, 544, 2017
6JQS	Structure of Transcription factor, GerE 分子名称: DNA-binding response regulator 著者 Lee, J.H, Lee, C.W. 登録日 2019-04-01 公開日 2019-04-24 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 Crystal structure of a transcription factor, GerE (PaGerE), from spore-forming bacterium Paenisporosarcina sp. TG-14. Biochem.Biophys.Res.Commun., 513, 2019
6KIW	Cryo-EM structure of human MLL3-ubNCP complex (4.0 angstrom) 分子名称: DNA (144-MER), DNA (145-MER), Histone H2A, ... 著者 Huang, J, Xue, H, Yao, T. 登録日 2019-07-20 公開日 2019-09-11 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural basis of nucleosome recognition and modification by MLL methyltransferases. Nature, 573, 2019
2ORG	Directing Macromolecular Conformation Through Halogen Bonds 分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3') 著者 Voth, A.R, Hays, F.A, Ho, P.S. 登録日 2007-02-02 公開日 2007-03-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Directing macromolecular conformation through halogen bonds. Proc.Natl.Acad.Sci.Usa, 104, 2007
1VTO	1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF TATAAAAG 分子名称: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TATA BINDING PROTEIN 著者 Kim, J.L, Burley, S.K. 登録日 1996-09-06 公開日 2011-07-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 1.9 A Resolution Refined Structure of TBP Recognizing the Minor Groove of TATAAAAG Nat.Struct.Biol., 1, 1994
2LOX	NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad2 分子名称: DNA repair protein RAD2, RNA polymerase II transcription factor B subunit 1 著者 Lafrance-Vanasse, J, Legault, P, Omichinski, J. 登録日 2012-01-27 公開日 2012-02-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2. Nucleic Acids Res., 40, 2012
2DWN	Crystal structure of the PriA protein complexed with oligonucleotides 分子名称: DNA (5'-D(*A*G)-3'), Primosomal protein N' 著者 Sasaki, K, Ose, T, Tanaka, T, Masai, H, Maenaka, K, Kohda, D. 登録日 2006-08-15 公開日 2006-11-07 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
6VBH	Human XPG endonuclease catalytic domain 分子名称: DNA repair protein complementing XP-G cells,Flap endonuclease 1, SULFATE ION 著者 Tsutakawa, S.E, Arvai, A.S, Tainer, J.A. 登録日 2019-12-18 公開日 2020-06-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.995 Å) 主引用文献 Human XPG nuclease structure, assembly, and activities with insights for neurodegeneration and cancer from pathogenic mutations. Proc.Natl.Acad.Sci.USA, 117, 2020
8EIH	Cryo-EM structure of human DNMT3B homo-tetramer (form I) 分子名称: DNA (cytosine-5)-methyltransferase 3B, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Lu, J.W, Song, J.K. 登録日 2022-09-15 公開日 2023-09-20 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Structural basis for the allosteric regulation and dynamic assembly of DNMT3B. Nucleic Acids Res., 51, 2023
8EII	Cryo-EM structure of human DNMT3B homo-tetramer (form II) 分子名称: DNA (cytosine-5)-methyltransferase 3B, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Lu, J.W, Song, J.K. 登録日 2022-09-15 公開日 2023-09-20 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.12 Å) 主引用文献 Structural basis for the allosteric regulation and dynamic assembly of DNMT3B. Nucleic Acids Res., 51, 2023
8EIK	Cryo-EM structure of human DNMT3B homo-hexamer 分子名称: DNA (cytosine-5)-methyltransferase 3B, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Lu, J.W, Song, J.K. 登録日 2022-09-15 公開日 2023-09-20 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.19 Å) 主引用文献 Structural basis for the allosteric regulation and dynamic assembly of DNMT3B. Nucleic Acids Res., 51, 2023
8EIJ	Cryo-EM structure of human DNMT3B homo-trimer 分子名称: DNA (cytosine-5)-methyltransferase 3B, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Lu, J.W, Song, J.K. 登録日 2022-09-15 公開日 2023-09-20 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Structural basis for the allosteric regulation and dynamic assembly of DNMT3B. Nucleic Acids Res., 51, 2023
1EN1	STRUCTURE OF THE HIV-1 MINUS STRAND PRIMER BINDING SITE 分子名称: DNA (5'-D(P*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') 著者 Johnson, P.E, Turner, R.B, Wu, Z.R, Levin, J.G, Summers, M.F. 登録日 2000-03-20 公開日 2000-04-04 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription Biochemistry, 39, 2000
2MBJ	Structure of an antiparallel (2+2) G-quadruplex formed by human telomeric repeats in Na+ solution (with G22-to-BrG substitution) 分子名称: DNA_(27-MER) 著者 Lim, K.W, Ng, V.C.M, Martin-Pintado, N, Heddi, B, Phan, A.T. 登録日 2013-08-02 公開日 2013-09-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of the human telomere in Na+ solution: an antiparallel (2+2) G-quadruplex scaffold reveals additional diversity. Nucleic Acids Res., 41, 2013
1DNX	RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES 分子名称: DNA/RNA (5'-R(*GP)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION 著者 Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J. 登録日 1999-12-16 公開日 2000-04-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes. Nucleic Acids Res., 28, 2000

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