PDB: 42053 件ウェブページステータス検索Chemie searchBIRD

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3G4U	Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and dichloropropane bound to the XE4 cavity 分子名称: 1,3-dichloropropane, CARBON MONOXIDE, GLOBIN-1, ... 著者 Knapp, J.E, Pahl, R, Cohen, J, Nichols, J.C, Schulten, K, Gibson, Q.H, Srajer, V, Royer Jr, W.E. 登録日 2009-02-04 公開日 2009-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis. Structure, 17, 2009
4L51	Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition 分子名称: 5-O-phosphono-alpha-D-ribofuranose, Transcriptional regulator LsrR 著者 Ryu, K.S, Ha, J.H, Eo, Y. 登録日 2013-06-10 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition. J.Am.Chem.Soc., 135, 2013
4L5J	Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition 分子名称: 5-O-phosphono-alpha-D-ribofuranose, Transcriptional regulator LsrR 著者 Ryu, K.S, Ha, J.H, Eo, Y. 登録日 2013-06-11 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition. J.Am.Chem.Soc., 135, 2013
5NL0	Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1 分子名称: DNA (197-MER), Histone H1.0-B, Histone H2A type 1, ... 著者 Garcia-Saez, I, Petosa, C, Dimitrov, S. 登録日 2017-04-03 公開日 2017-05-17 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (5.4 Å) 主引用文献 Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1. Mol. Cell, 66, 2017
5YPY	Crystal structure of IlvN. Val-1c 分子名称: Acetolactate synthase isozyme 1 small subunit, VALINE 著者 Sarma, S.P, Bansal, A, Schindelin, H, Demeler, B. 登録日 2017-11-04 公開日 2018-09-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.966 Å) 主引用文献 Crystallographic Structures of IlvN·Val/Ile Complexes: Conformational Selectivity for Feedback Inhibition of Aceto Hydroxy Acid Synthases. Biochemistry, 58, 2019
3T38	Corynebacterium glutamicum thioredoxin-dependent arsenate reductase Cg_ArsC1' 分子名称: (4S,5S)-1,2-DITHIANE-4,5-DIOL, Arsenate Reductase 著者 Messens, J, Wahni, K, Dufe, T.V. 登録日 2011-07-25 公開日 2011-11-23 最終更新日 2011-11-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Corynebacterium glutamicum survives arsenic stress with arsenate reductases coupled to two distinct redox mechanisms. Mol.Microbiol., 82, 2011
3BS6	1.8 Angstrom crystal structure of the periplasmic domain of the membrane insertase YidC 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Inner membrane protein oxaA, ... 著者 Ravaud, S, Sinning, I. 登録日 2007-12-22 公開日 2008-02-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The Crystal Structure of the Periplasmic Domain of the Escherichia coli Membrane Protein Insertase YidC Contains a Substrate Binding Cleft J.Biol.Chem., 283, 2008
5WTF	Cryo-EM structure for Hepatitis A virus empty particle 分子名称: VP0, VP1, VP3 著者 Wang, X, Zhu, L, Dang, M, Hu, Z, Gao, Q, Yuan, S, Sun, Y, Zhang, B, Ren, J, Walter, T.S, Wang, J, Fry, E.E, Stuart, D.I, Rao, Z. 登録日 2016-12-11 公開日 2017-01-25 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Potent neutralization of hepatitis A virus reveals a receptor mimic mechanism and the receptor recognition site Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3BXF	Crystal structure of effector binding domain of central glycolytic gene regulator (CggR) from Bacillus subtilis in complex with effector fructose-1,6-bisphosphate 分子名称: 1,3-DIHYDROXYACETONEPHOSPHATE, 1,6-di-O-phosphono-beta-D-fructofuranose, CHLORIDE ION, ... 著者 Rezacova, P, Otwinowski, Z. 登録日 2008-01-13 公開日 2008-07-01 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structures of the effector-binding domain of repressor Central glycolytic gene Regulator from Bacillus subtilis reveal ligand-induced structural changes upon binding of several glycolytic intermediates. Mol.Microbiol., 69, 2008
2CJ5	Crystal Structure of a Cell Wall Invertase Inhibitor from Tobacco (pH 5.0) 分子名称: ACETATE ION, INVERTASE INHIBITOR, SULFATE ION 著者 Hothorn, M, Scheffzek, K. 登録日 2006-03-29 公開日 2006-03-30 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Multiple Crystal Forms of the Cell-Wall Invertase Inhibitor from Tobacco Support High Conformational Rigidity Over a Broad Ph-Range Acta Crystallogr.,Sect.D, 62, 2006
4ZBO	Streptomyces bingchenggensis acetoacetate decarboxylase in non-covalent complex with potassium formate 分子名称: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Acetoacetate decarboxylase, ... 著者 Mydy, L.S, Silvaggi, N.R. 登録日 2015-04-15 公開日 2015-06-17 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Sbi00515, a Protein of Unknown Function from Streptomyces bingchenggensis, Highlights the Functional Versatility of the Acetoacetate Decarboxylase Scaffold. Biochemistry, 54, 2015
2OR3	Pre-oxidation Complex of Human DJ-1 分子名称: Protein DJ-1, SULFATE ION 著者 Witt, A.C, Lakshminarasimhan, M, Wilson, M.A. 登録日 2007-02-01 公開日 2007-02-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Cysteine pKa depression by a protonated glutamic acid in human DJ-1. Biochemistry, 47, 2008
2HY7	Crystal Structure of GumK, a beta-glucuronosyltransferase from Xanthomonas campestris 分子名称: Glucuronosyltransferase GumK 著者 Barreras, M. 登録日 2006-08-04 公開日 2008-04-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and mechanism of GumK, a membrane-associated glucuronosyltransferase. J.Biol.Chem., 283, 2008
4ZGL	Hit Like Protein 分子名称: ADENOSINE MONOPHOSPHATE, Uncharacterized HIT-like protein HP_0404 著者 Tarique, K.F, Devi, S, Abdul Rehman, S.A, Gourinath, S. 登録日 2015-04-23 公開日 2015-05-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Crystal structure of HINT from Helicobacter pylori. Acta Crystallogr.,Sect.F, 72, 2016
2CC3	Structure of Agrobacterium tumefaciens VirB8 protein 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, PROTEIN VIRB8 著者 Bailey, S, Ward, D, Middleton, R, Grossmann, G, Zambryski, P.C. 登録日 2006-01-11 公開日 2006-01-30 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Agrobacterium Tumefaciens Virb8 Structure Reveals Potential Protein-Protein Interactions Sites. Proc.Natl.Acad.Sci.USA, 103, 2006
5WP6	Cryo-EM structure of a human TRPM4 channel in complex with calcium and decavanadate 分子名称: DECAVANADATE, Transient receptor potential cation channel subfamily M member 4 著者 Winkler, P.A, Huang, Y, Sun, W, Du, J, Lu, W. 登録日 2017-08-03 公開日 2017-12-13 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Electron cryo-microscopy structure of a human TRPM4 channel. Nature, 552, 2017
3BM1	Crystal structure of a minimal nitroreductase ydjA from Escherichia coli K12 with and without FMN cofactor 分子名称: FLAVIN MONONUCLEOTIDE, Protein ydjA 著者 Choi, J.W, Kim, J.S. 登録日 2007-12-12 公開日 2008-01-01 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a minimal nitroreductase, ydjA, from Escherichia coli K12 with and without FMN cofactor J.Mol.Biol., 377, 2008
4LI1	Crystal Structures of Lgr4 and its complex with R-spondin1 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat-containing G-protein coupled receptor 4 著者 Xu, Y, Rajashankar, K, Robev, D. 登録日 2013-07-02 公開日 2013-08-07 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.658 Å) 主引用文献 Crystal structures of lgr4 and its complex with R-spondin1. Structure, 21, 2013
5X2J	Crystal structure of a recombinant hybrid manganese superoxide dismutase from Staphylococcus equorum and Staphylococcus saprophyticus 分子名称: MANGANESE (II) ION, manganese superoxide dismutase 著者 Retnoningrum, D.S, Yoshida, H, Arumsari, S, Kamitori, S, Ismaya, W.T. 登録日 2017-01-31 公開日 2018-01-31 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 The first crystal structure of manganese superoxide dismutase from the genus Staphylococcus Acta Crystallogr F Struct Biol Commun, 74, 2018
2ZNW	Crystal Structure of ScFv10 in Complex with Hen Egg Lysozyme 分子名称: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Lysozyme C, ScFv10 著者 DeSantis, M.E, Acchione, M, Li, M, Walter, R.L, Wlodawer, A, Smith-Gill, S. 登録日 2008-05-02 公開日 2009-01-27 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 Specific fluorine labeling of the HyHEL10 antibody affects antigen binding and dynamics Biochemistry, 51, 2012
3TGO	Crystal structure of the E. coli BamCD complex 分子名称: CHLORIDE ION, GLYCEROL, Lipoprotein 34, ... 著者 Paetzel, M, Kim, K.H, Aulakh, S. 登録日 2011-08-17 公開日 2011-09-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of the beta-barrel assembly machinery BamCD protein complex J.Biol.Chem., 286, 2011
2CJ4	Crystal Structure of a Cell Wall Invertase Inhibitor from Tobacco at pH 4.6 分子名称: ACETATE ION, INVERTASE INHIBITOR, SULFATE ION 著者 Hothorn, M, Scheffzek, K. 登録日 2006-03-29 公開日 2006-03-30 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Multiple Crystal Forms of the Cell Wall Invertase Inhibitor from Tobacco Support High Conformational Rigidity Over a Broad Ph-Range Acta Crystallogr.,Sect.D, 62, 2006
2CB3	Crystal structure of peptidoglycan recognition protein-LE in complex with tracheal cytotoxin (monomeric diaminopimelic acid-type peptidoglycan) 分子名称: GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA, GLYCEROL, PEPTIDOGLYCAN-RECOGNITION PROTEIN-LE 著者 Lim, J.-H, Kim, M.-S, Oh, B.-H. 登録日 2005-12-29 公開日 2006-01-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Basis for Preferential Recognition of Diaminopimelic Acid-Type Peptidoglycan by a Subset of Peptidoglycan Recognition Proteins J.Biol.Chem., 281, 2006
6MVS	Structure of a bacterial ALDH16 complexed with NAD 分子名称: Aldehyde dehydrogenase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Tanner, J.J, Liu, L. 登録日 2018-10-28 公開日 2018-12-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer. J. Mol. Biol., 431, 2019
4NSE	BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE, H4B-FREE, L-ARG COMPLEX 分子名称: ACETATE ION, ARGININE, CACODYLATE ION, ... 著者 Raman, C.S, Li, H, Martasek, P, Kral, V, Masters, B.S.S, Poulos, T.L. 登録日 1998-10-07 公開日 1999-05-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of constitutive endothelial nitric oxide synthase: a paradigm for pterin function involving a novel metal center. Cell(Cambridge,Mass.), 95, 1998

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