PDB: 97310 件ウェブページステータス検索Chemie searchBIRD

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7QIJ	Complex of the Yersinia enterocolitica Type III secretion export gate YscV with substrate:chaperone complex YscX:YscY 分子名称: Chaperone protein YscY, Low calcium response locus protein D, Yop proteins translocation protein X 著者 Gilzer, D, Niemann, H.H. 登録日 2021-12-15 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Direct interaction of a chaperone-bound type III secretion substrate with the export gate. Nat Commun, 13, 2022
7QII	Complex of the Yersinia enterocolitica Type III secretion proteins YscX and YscY 分子名称: Chaperone protein YscY, Yop proteins translocation protein X 著者 Gilzer, D, Schreiner, M, Niemann, H.H. 登録日 2021-12-15 公開日 2022-06-01 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.29 Å) 主引用文献 Direct interaction of a chaperone-bound type III secretion substrate with the export gate. Nat Commun, 13, 2022
7QIH	Complex of the Yersinia enterocolitica Type III secretion proteins YscX and YscY 分子名称: Chaperone protein YscY, Yop proteins translocation protein X 著者 Gilzer, D, Niemann, H.H. 登録日 2021-12-15 公開日 2022-06-01 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Direct interaction of a chaperone-bound type III secretion substrate with the export gate. Nat Commun, 13, 2022
4GS9	Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with an inactive benzoxadiazole antagonist 分子名称: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, ... 著者 Scheuermann, T.H, Gardner, K.H. 登録日 2012-08-27 公開日 2013-04-03 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Development of Inhibitors of the PAS-B Domain of the HIF-2 alpha Transcription Factor J.Med.Chem., 56, 2013
3O62	Nucleosome core particle modified with a cisplatin 1,3-cis-{Pt(NH3)2}2+-d(GpTpG) intrastrand cross-link 分子名称: Cisplatin, DNA (146-MER), Histone H2A type 1, ... 著者 Lippard, S.J, Todd, R.C. 登録日 2010-07-28 公開日 2011-01-05 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.216 Å) 主引用文献 Consequences of Cisplatin binding on nucleosome structure and dynamics. Chem.Biol., 17, 2010
6ZME	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Thoms, M, Buschauer, R, Ameismeier, M, Denk, T, Kratzat, H, Mackens-Kiani, T, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2020-07-02 公開日 2020-08-12 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2. Science, 369, 2020
8IXU	Rat Transcobalamin in Complex with Cobalamin 分子名称: CHLORIDE ION, COBALAMIN, NITRATE ION, ... 著者 Bokhove, M, Kumasaka, T. 登録日 2023-04-03 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 The structure of the rat vitamin B 12 transporter TC and its complex with glutathionylcobalamin. J.Biol.Chem., 300, 2024
8IXT	Rat Transcobalamin in Complex with Glutathionylcobalamin 分子名称: CHLORIDE ION, COBALAMIN, GLUTATHIONE, ... 著者 Bokhove, M, Kumasaka, T. 登録日 2023-04-03 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 The structure of the rat vitamin B 12 transporter TC and its complex with glutathionylcobalamin. J.Biol.Chem., 300, 2024
6IP8	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. 登録日 2018-11-02 公開日 2019-05-29 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6G04	NMR Solution Structure of Yeast TSR2(1-152) in Complex with S26A(100-119) 分子名称: 40S ribosomal protein S26-A, Pre-rRNA-processing protein TSR2 著者 Michel, E, Schuetz, S, Damberger, F.F, Allain, F.H.-T, Panse, V.G. 登録日 2018-03-16 公開日 2018-09-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Molecular basis for disassembly of an importin:ribosomal protein complex by the escortin Tsr2. Nat Commun, 9, 2018
7R81	Structure of the translating Neurospora crassa ribosome arrested by cycloheximide 分子名称: 18S rRNA, 26S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ... 著者 Shen, L, Su, Z, Yang, K, Wu, C, Becker, T, Bell-Pedersen, D, Zhang, J, Sachs, M.S. 登録日 2021-06-25 公開日 2021-12-01 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structure of the translating Neurospora ribosome arrested by cycloheximide Proc.Natl.Acad.Sci.USA, 118, 2021
3SIU	Structure of a hPrp31-15.5K-U4atac 5' stem loop complex, monomeric form 分子名称: NHP2-like protein 1, SULFATE ION, U4/U6 small nuclear ribonucleoprotein Prp31, ... 著者 Liu, S, Ghalei, H, Luhrmann, R, Wahl, M.C. 登録日 2011-06-20 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.626 Å) 主引用文献 Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31. Rna, 17, 2011
3SIV	Structure of a hPrp31-15.5K-U4atac 5' stem loop complex, dimeric form 分子名称: NHP2-like protein 1, U4/U6 small nuclear ribonucleoprotein Prp31, U4atac snRNA 著者 Liu, S, Ghalei, H, Luhrmann, R, Wahl, M.C. 登録日 2011-06-20 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.304 Å) 主引用文献 Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31. Rna, 17, 2011
6OKJ	Native ananain from Ananas comosus 分子名称: Ananain 著者 Yongqing, T, Wilmann, P.G, Pike, R.N, Wijeyewickrema, L.C. 登録日 2019-04-13 公開日 2019-04-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Determination of the crystal structure and substrate specificity of ananain. Biochimie, 166, 2019
6G03	NMR Solution Structure of yeast TSR2(1-152) 分子名称: Pre-rRNA-processing protein TSR2 著者 Michel, E, Schuetz, S, Damberger, F.F, Allain, F.H.-T, Panse, V.G. 登録日 2018-03-16 公開日 2018-09-19 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Molecular basis for disassembly of an importin:ribosomal protein complex by the escortin Tsr2. Nat Commun, 9, 2018
7OH4	Cryo-EM structure of Drs2p-Cdc50p in the E1 state with PI4P and Mg2+ bound 分子名称: (2R)-1-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Timcenko, M, Dieudonne, T, Montigny, C, Boesen, T, Lyons, J.A, Lenoir, G, Nissen, P. 登録日 2021-05-09 公開日 2021-06-09 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis of substrate-independent phosphorylation in a P4-ATPase lipid flippase J.Mol.Biol., 2021
7OH6	Cryo-EM structure of Drs2p-Cdc50p in the [PS]E2-AlFx state 分子名称: (2R)-1-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Timcenko, M, Dieudonne, T, Montigny, C, Boesen, T, Lyons, J.A, Lenoir, G, Nissen, P. 登録日 2021-05-09 公開日 2021-06-09 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis of substrate-independent phosphorylation in a P4-ATPase lipid flippase J.Mol.Biol., 2021
7OH5	Cryo-EM structure of Drs2p-Cdc50p in the E1-AlFx-ADP state 分子名称: (2R)-1-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Timcenko, M, Dieudonne, T, Montigny, C, Boesen, T, Lyons, J.A, Lenoir, G, Nissen, P. 登録日 2021-05-09 公開日 2021-06-09 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of substrate-independent phosphorylation in a P4-ATPase lipid flippase J.Mol.Biol., 2021
7R6K	State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region 分子名称: 25S rRNA, 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... 著者 Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. 登録日 2021-06-22 公開日 2022-11-09 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.17 Å) 主引用文献 Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
7R7C	State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model 分子名称: 25S rRNA, 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... 著者 Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. 登録日 2021-06-24 公開日 2022-11-09 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.71 Å) 主引用文献 Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
7R6Q	State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model 分子名称: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... 著者 Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. 登録日 2021-06-23 公開日 2022-11-09 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
8E5T	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ... 著者 Sanghai, Z.A, Piwowarczyk, R, Vanden Broeck, A, Klinge, S. 登録日 2022-08-22 公開日 2023-04-12 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 A co-transcriptional ribosome assembly checkpoint controls nascent large ribosomal subunit maturation. Nat.Struct.Mol.Biol., 30, 2023
8SH5	Crystal structure of 3'cap-independent translation enhancers (CITE) from Pea enation mosaic virus RNA 2 (PEMV2) with Fab BL3-6K170A 分子名称: Fab BL3-6K170A heavy chain, Fab BL3-6K170A light chain, RNA (88-MER) 著者 Lewicka, A, Roman, C, Rice, P.A, Piccirilli, J.A. 登録日 2023-04-13 公開日 2023-08-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Crystal structure of a cap-independent translation enhancer RNA. Nucleic Acids Res., 51, 2023
4IQJ	Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*GP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*CP*G)-3'), DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*A)-3'), DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DOC))-3'), ... 著者 Liu, B, Lin, J, Steitz, T. 登録日 2013-01-11 公開日 2013-03-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome Structure, 21, 2013
5LYB	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn 分子名称: 18S rRNA, 25S rRNA, 40S Ribosomal Protein S12, ... 著者 Melnikov, S, Mailliot, J. 登録日 2016-09-26 公開日 2016-11-23 最終更新日 2016-12-14 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016

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