PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7MKQ	Escherichia coli RNA polymerase and RapA binary complex 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Qayyum, M.Z, Murakami, K.S. 登録日 2021-04-26 公開日 2021-06-02 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli. J.Biol.Chem., 297, 2021
5TMC	Re-refinement of Thermus thermopiles DNA-directed RNA polymerase structure 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Wang, J. 登録日 2016-10-12 公開日 2016-11-23 最終更新日 2019-02-20 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 On the validation of crystallographic symmetry and the quality of structures. Protein Sci., 24, 2015
5TJG	Thermus aquaticus delta1.1-sigmaA holoenzyme/downstream-fork promoter complex with an open clamp 分子名称: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*A)-3'), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Darst, S.A, Bae, B. 登録日 2016-10-04 公開日 2017-06-21 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 RNA polymerase motions during promoter melting. Science, 356, 2017
8K60	Cryo-EM structure of Streptomyces coelicolor transcription initiation complex with the global transcription factor AfsR 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Lin, W, Shi, J. 登録日 2023-07-24 公開日 2024-07-31 最終更新日 2024-08-21 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural insights into transcription activation of the Streptomyces antibiotic regulatory protein, AfsR. Iscience, 27, 2024
6LTS	Crystal structure of Thermus thermophilus transcription initiation complex comprising a truncated sigma finger 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zhang, Y, Ebright, R.H. 登録日 2020-01-23 公開日 2020-03-11 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
8I24	Clostridium thermocellum RNA polymerase transcription open complex with SigI6 and its promoter 分子名称: DNA (80-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Li, J, Zhang, H, Li, D, Feng, Y, Zhu, P. 登録日 2023-01-13 公開日 2023-10-11 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Structure of the transcription open complex of distinct sigma I factors. Nat Commun, 14, 2023
7VPD	Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with one Zur dimers 分子名称: DNA (84-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Yang, X, Zheng, J. 登録日 2021-10-15 公開日 2022-08-03 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.77 Å) 主引用文献 Structural basis of Streptomyces transcription activation by zinc uptake regulator. Nucleic Acids Res., 50, 2022
8YBK	Cryo-EM structure of the human nucleosome containing the H3.1 E97K mutant 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Kimura, T, Hirai, S, Kujirai, T, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2024-02-14 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 Cryo-EM structure and biochemical analyses of the nucleosome containing the cancer-associated histone H3 mutation E97K. Genes Cells, 2024
9B3P	The cryo-EM structure of the H2A.Z-H3.3 double-variant nucleosome 分子名称: DNA (128-MER), Histone H2A.Z, Histone H2B 1.1, ... 著者 Tan, D, Sokolova, V. 登録日 2024-03-19 公開日 2024-06-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural and Biochemical Characterization of the Nucleosome Containing Variants H3.3 and H2A.Z. Epigenomes, 8, 2024
8WNB	Crystal structure of d(ACGCCGT/ACGICGT) 分子名称: DNA (5'-D(P*AP*CP*GP*CP*CP*GP*T)-3'), DNA (5'-D(P*AP*CP*GP*IP*CP*GP*T)-3') 著者 Hou, M.H, Huang, H.T, Lin, S.M. 登録日 2023-10-05 公開日 2024-05-29 最終更新日 2024-08-28 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Structural basis of water-mediated cis Watson-Crick/Hoogsteen base-pair formation in non-CpG methylation. Nucleic Acids Res., 52, 2024
6DNW	Sequence Requirements of the Listeria innocua prophage attP site 分子名称: DNA (26-MER), Putative integrase [Bacteriophage A118], ZINC ION 著者 Li, H, Sharp, R, Rutherford, K, Gupta, K, Van Duyne, G.D. 登録日 2018-06-08 公開日 2018-10-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.849 Å) 主引用文献 Serine Integrase attP Binding and Specificity. J. Mol. Biol., 430, 2018
6ASX	CryoEM structure of E.coli his pause elongation complex 分子名称: DNA (32-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Kang, J.Y, Landick, R, Darst, S.A. 登録日 2017-08-25 公開日 2018-03-28 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 RNA Polymerase Accommodates a Pause RNA Hairpin by Global Conformational Rearrangements that Prolong Pausing. Mol. Cell, 69, 2018
8PIB	autoinhibited RfaH bound to E. coli transcription complex paused at ops site (encounter complex) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. 登録日 2023-06-21 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
8PFG	autoinhibited RfaH bound to E. coli transcription complex paused at ops site (encounter complex), not fully complementary scaffold 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. 登録日 2023-06-15 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
8PHK	fully recruited RfaH bound to E. coli transcription complex paused at ops site 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. 登録日 2023-06-20 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
5FJ9	Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A 分子名称: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2, ... 著者 Hoffmann, N.A, Jakobi, A.J, Moreno-Morcillo, M, Glatt, S, Kosinski, J, Hagen, W.J, Sachse, C, Muller, C.W. 登録日 2015-10-06 公開日 2015-11-25 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Molecular Structures of Unbound and Transcribing RNA Polymerase III. Nature, 528, 2015
5FJA	Cryo-EM structure of yeast RNA polymerase III at 4.7 A 分子名称: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2, ... 著者 Hoffmann, N.A, Jakobi, A.J, Moreno-Morcillo, M, Glatt, S, Kosinski, J, Hagen, W.J, Sachse, C, Muller, C.W. 登録日 2015-10-06 公開日 2015-11-25 最終更新日 2017-08-02 実験手法 ELECTRON MICROSCOPY (4.65 Å) 主引用文献 Molecular Structures of Unbound and Transcribing RNA Polymerase III. Nature, 528, 2015
8PID	backtracked E. coli transcription complex paused at ops site and bound to RfaH 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. 登録日 2023-06-21 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
8PFJ	fully recruited RfaH bound to E. coli transcription complex paused at ops site (not fully complementary scaffold; alternative state of RfaH) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. 登録日 2023-06-16 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
8PEN	fully recruited RfaH bound to E. coli transcription complex paused at ops site (alternative state of RfaH) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. 登録日 2023-06-14 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
8PIM	fully recruited RfaH bound to E. coli transcription complex paused at ops site (not complementary scaffold) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. 登録日 2023-06-22 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
5FMF	the P-lobe of RNA polymerase II pre-initiation complex 分子名称: DNA REPAIR HELICASE RAD25, SSL2, DNA REPAIR HELICASE RAD3, ... 著者 Murakami, K, Tsai, K, Kalisman, N, Bushnell, D.A, Asturias, F.J, Kornberg, R.D. 登録日 2015-11-03 公開日 2015-11-25 最終更新日 2017-07-12 実験手法 ELECTRON MICROSCOPY (6 Å) 主引用文献 Structure of an RNA Polymerase II Pre-Initiation Complex Proc.Natl.Acad.Sci.USA, 112, 2015
5G5L	RNA polymerase I-Rrn3 complex at 4.8 A resolution 分子名称: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA14, ... 著者 Engel, C, Plitzko, J, Cramer, P. 登録日 2016-05-26 公開日 2016-07-27 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 RNA Polymerase I-Rrn3 Complex at 4.8 A Resolution Nat.Commun., 7, 2016
6C06	Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J, Lilic, M. 登録日 2017-12-27 公開日 2018-03-28 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.15 Å) 主引用文献 Fidaxomicin jamsMycobacterium tuberculosisRNA polymerase motions needed for initiation via RbpA contacts. Elife, 7, 2018
6BJS	CryoEM structure of E.coli his pause elongation complex without pause hairpin 分子名称: DNA (32-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Kang, J.Y, Landick, R, Darst, S.A. 登録日 2017-11-06 公開日 2018-03-28 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.5 Å) 主引用文献 RNA Polymerase Accommodates a Pause RNA Hairpin by Global Conformational Rearrangements that Prolong Pausing. Mol. Cell, 69, 2018

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