PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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7RYH	A. baumannii Ribosome-TP-6076 complex: Empty 70S 分子名称: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, 16S Ribosomal RNA, 23S ribosomal RNA, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2021-08-25 公開日 2022-02-02 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.43 Å) 主引用文献 An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii. Mbio, 13, 2022
4L47	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-07 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.220001 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LFZ	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-27 公開日 2014-08-06 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.92000055 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
7S58	Crystal Structure of the tick evasin EVA-P974 complexed to human chemokine CCL7 分子名称: C-C motif chemokine 7, Evasin P974 著者 Bhusal, R.P, Devkota, S.R, Aryal, P, Wilce, M.C.J, Stone, M.J. 登録日 2021-09-10 公開日 2022-03-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 Structure-guided engineering of tick evasins for targeting chemokines in inflammatory diseases. Proc.Natl.Acad.Sci.USA, 119, 2022
5UYL	70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-14 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity. Nature, 546, 2017
5WYJ	Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 40S ribosomal protein S1-A, ... 著者 Ye, K, Zhu, X, Sun, Q. 登録日 2017-01-13 公開日 2017-03-29 最終更新日 2019-10-09 実験手法 ELECTRON MICROSCOPY (8.7 Å) 主引用文献 Molecular architecture of the 90S small subunit pre-ribosome. Elife, 6, 2017
4GZZ	Crystal structures of bacterial RNA Polymerase paused elongation complexes 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Weixlbaumer, A, Leon, K, Landick, R, Darst, S.A. 登録日 2012-09-06 公開日 2013-02-13 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (4.2927 Å) 主引用文献 Structural basis of transcriptional pausing in bacteria. Cell(Cambridge,Mass.), 152, 2013
4LCJ	CtBP2 in complex with substrate MTOB 分子名称: 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID, C-terminal-binding protein 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Hilbert, B.J, Schiffer, C.A, Royer Jr, W.E. 登録日 2013-06-21 公開日 2014-03-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design. Febs Lett., 588, 2014
5WYK	Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 40S ribosomal protein S1-A, ... 著者 Ye, K, Zhu, X, Sun, Q. 登録日 2017-01-13 公開日 2017-03-29 最終更新日 2017-05-17 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Molecular architecture of the 90S small subunit pre-ribosome. Elife, 6, 2017
4FQT	Structure of AgamOBP1 Bound to 6-methyl-5-hepten-2-one 分子名称: 6-methylhept-5-en-2-one, Anopheles Gambiae Odorant Binding protein 1, TETRAETHYLENE GLYCOL 著者 Murphy, E.J, Booth, J.C. 登録日 2012-06-25 公開日 2013-01-02 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Interactions of Anopheles gambiae Odorant-binding Proteins with a Human-derived Repellent: IMPLICATIONS FOR THE MODE OF ACTION OF N,N-DIETHYL-3-METHYLBENZAMIDE (DEET). J.Biol.Chem., 288, 2013
5X51	RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... 著者 Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. 登録日 2017-02-14 公開日 2017-05-17 実験手法 X-RAY DIFFRACTION (6.996 Å) 主引用文献 Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
5X50	RNA Polymerase II from Komagataella Pastoris (Type-2 crystal) 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... 著者 Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. 登録日 2017-02-14 公開日 2017-05-17 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (4.293 Å) 主引用文献 Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
5V8F	Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1 分子名称: Cell division control protein 6, Cell division cycle protein CDT1, DNA (39-MER), ... 著者 Yuan, Z, Riera, A, Bai, L, Sun, J, Spanos, C, Chen, Z.A, Barbon, M, Rappsilber, J, Stillman, B, Speck, C, Li, H. 登録日 2017-03-21 公開日 2017-05-10 最終更新日 2020-04-22 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1. Nat. Struct. Mol. Biol., 24, 2017
4LEL	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-25 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.90000033 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LLN	Crystal structure of S. aureus MepR-DNA complex 分子名称: MepR, Palindromized mepR operator sequence 著者 Birukou, I, Brennan, R.G. 登録日 2013-07-09 公開日 2014-05-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.842 Å) 主引用文献 Structural mechanism of transcription regulation of the Staphylococcus aureus multidrug efflux operon mepRA by the MarR family repressor MepR. Nucleic Acids Res., 42, 2014
5XJC	Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Zhang, X, Yan, C, Hang, J, Finci, I.L, Lei, J, Shi, Y. 登録日 2017-04-30 公開日 2017-07-05 最終更新日 2020-10-14 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 An Atomic Structure of the Human Spliceosome Cell, 169, 2017
5U9P	Crystal structure of a gluconate 5-dehydrogenase from Burkholderia cenocepacia J2315 in complex with NADP and tartrate 分子名称: 1,2-ETHANEDIOL, Gluconate 5-dehydrogenase, L(+)-TARTARIC ACID, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2016-12-17 公開日 2017-01-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of a gluconate 5-dehydrogenase from Burkholderia cenocepacia J2315 in complex with NADP and tartrate TO BE PUBLISHED
4LNT	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-12 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (2.94 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4J4A	Crystal Structure of Engineered Trimeric Cortexillin-1 Coiled-Coil Variant 分子名称: Cortexillin-1, PHOSPHATE ION 著者 Bjelic, S, Steinmetz, M.O, Kammerer, R.A. 登録日 2013-02-06 公開日 2013-05-22 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.6499 Å) 主引用文献 Structural basis for the oligomerization-state switch from a dimer to a trimer of an engineered cortexillin-1 coiled-coil variant. Plos One, 8, 2013
4LSK	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-22 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.48000622 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
5XTC	Cryo-EM structure of human respiratory complex I transmembrane arm 分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ... 著者 Gu, J, Wu, M, Yang, M. 登録日 2017-06-19 公開日 2017-08-30 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2. Cell, 170, 2017
4G1N	PKM2 in complex with an activator 分子名称: MAGNESIUM ION, N-(4-{[4-(pyrazin-2-yl)piperazin-1-yl]carbonyl}phenyl)quinoline-8-sulfonamide, OXALATE ION, ... 著者 Kung, C, Hixon, J, Dang, L, DeLaBarre, B, Qian, K.C. 登録日 2012-07-10 公開日 2012-10-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Small Molecule Activation of PKM2 in Cancer Cells Induces Serine Auxotrophy. Chem.Biol., 19, 2012
4LT8	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-23 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.14000177 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
1VWQ	STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 2.5, I4122 COMPLEX 分子名称: PENTANOIC ACID, PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN 著者 Katz, B.A, Cass, R.T. 登録日 1997-03-03 公開日 1998-03-18 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
8CGN	Non-rotated 80S S. cerevisiae ribosome with ligands 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-02-06 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.28 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024

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