PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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2FPL	RadA recombinase in complex with AMP-PNP and low concentration of K+ 分子名称: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Wu, Y, Qian, X, He, Y, Moya, I.A, Luo, Y. 登録日 2006-01-16 公開日 2006-01-31 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure of Methanococcus Voltae Rada in Complex with Adp: hydrolysis-induced conformational change Biochemistry, 44, 2005
2FPM	RadA recombinase in complex with AMP-PNP and high concentration of K+ 分子名称: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Wu, Y, Qian, X, He, Y, Moya, I.A, Luo, Y. 登録日 2006-01-16 公開日 2006-01-31 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal Structure of Methanoccocus Voltae Rada in Complex with Adp: hydrolysis-induced conformational change Biochemistry, 44, 2005
8JHF	Native SUV420H1 bound to 167-bp nucleosome 分子名称: DNA (160-MER), Histone H2A.Z, Histone H2B type 1-K, ... 著者 Lin, F, Li, W. 登録日 2023-05-23 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.68 Å) 主引用文献 Structural basis of nucleosomal H4K20 recognition and methylation by SUV420H1 methyltransferase. Cell Discov, 9, 2023
8JHG	Native SUV420H1 bound to 167-bp nucleosome 分子名称: DNA (160-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... 著者 Lin, F, Li, W. 登録日 2023-05-23 公開日 2023-11-22 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 Structural basis of nucleosomal H4K20 recognition and methylation by SUV420H1 methyltransferase. Cell Discov, 9, 2023
8DK5	Structure of 187bp LIN28b nucleosome with site 0 mutation 分子名称: DNA (187-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Lian, T, Guan, R, Bai, Y. 登録日 2022-07-02 公開日 2023-06-28 実験手法 ELECTRON MICROSCOPY (2.71 Å) 主引用文献 Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
6U2U	Helix-Loop-helix motif of mouse DNA-binding protein inhibitor ID-1 分子名称: DNA-binding protein inhibitor ID-1 著者 Benezra, R, Pavletich, N.P, Goldgur, Y, Gall, A.-L. 登録日 2019-08-20 公開日 2019-10-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 A Small-Molecule Pan-Id Antagonist Inhibits Pathologic Ocular Neovascularization. Cell Rep, 29, 2019
7OTQ	Cryo-EM structure of ALC1/CHD1L bound to a PARylated nucleosome 分子名称: Chromodomain-helicase-DNA-binding protein 1-like, DNA (149-MER) Widom 601 sequence, Histone H2A type 1, ... 著者 Bacic, L, Gaullier, G, Deindl, S. 登録日 2021-06-10 公開日 2021-09-15 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome Elife, 10, 2021
3KWQ	Structural characterization of H3K56Q nucleosomes and nucleosomal arrays 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Lilyestrom, W.G, Clark, N. 登録日 2009-12-01 公開日 2010-05-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural characterization of H3K56Q nucleosomes and nucleosomal arrays. Biochim.Biophys.Acta, 1799
7X3V	Cryo-EM structure of IOC3-N2 nucleosome 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Lifei, L, Kangjing, C, Chen, Z. 登録日 2022-03-01 公開日 2023-09-20 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 Structure of the ISW1a complex bound to the dinucleosome. Nat.Struct.Mol.Biol., 31, 2024
9BVT	RNA Pol II - High Mn(+2) concentration 分子名称: DNA (5'-D(P*AP*CP*GP*TP*CP*CP*CP*TP*CP*TP*CP*GP*A)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Calero, G. 登録日 2024-05-20 公開日 2024-10-02 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proc.Natl.Acad.Sci.USA, 121, 2024
9BW0	RNA Polymerase II - No ATP 分子名称: DNA (5'-D(P*AP*CP*GP*TP*CP*CP*CP*TP*CP*TP*CP*GP*A)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Calero, G. 登録日 2024-05-20 公開日 2024-10-02 実験手法 X-RAY DIFFRACTION (3.51 Å) 主引用文献 Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proc.Natl.Acad.Sci.USA, 121, 2024
1VT7	Structures of the mismatched duplex D(GGGTGCCC) 分子名称: DNA (5'-D(*GP*GP*GP*TP*GP*CP*CP*C)-3') 著者 Rabinovich, D, Haran, T, Eisenstein, M, Shakked, Z. 登録日 1996-12-02 公開日 2011-07-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of the mismatched duplex d(GGGTGCCC) and one of its Watson-Crick analogues d(GGGCGCCC). J.Mol.Biol., 200, 1988
7PKS	Structural basis of Integrator-mediated transcription regulation 分子名称: DNA Template, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... 著者 Fianu, I, Chen, Y, Dienemann, C, Cramer, P. 登録日 2021-08-26 公開日 2021-12-08 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural basis of Integrator-mediated transcription regulation. Science, 374, 2021
6DT7	Bacteriophage N4 RNA polymerase II and DNA complex 分子名称: DNA (5'-D(P*CP*CP*AP*CP*CP*TP*GP*CP*A)-3'), RNAP1, RNAP2 著者 Molodtsov, V, Murakami, K.S. 登録日 2018-06-15 公開日 2018-07-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
4MDE	Structure of bacterial polynucleotide kinase product complex bound to GDP and DNA 分子名称: DNA (5'-D(P*CP*CP*TP*GP*T)-3'), GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Shuman, S, Das, U, Wang, L.K, Smith, P, Jacewicz, A. 登録日 2013-08-22 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition. Nucleic Acids Res., 42, 2014
6JWE	structure of RET G-quadruplex in complex with colchicine 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3'), N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 著者 Wang, F, Wang, C, Liu, Y, Lan, W.X, Li, Y.M, Wang, R.X, Cao, C. 登録日 2019-04-20 公開日 2020-02-26 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Colchicine selective interaction with oncogene RET G-quadruplex revealed by NMR. Chem.Commun.(Camb.), 56, 2020
2FF4	Mycobacterium tuberculosis EmbR in complex with low affinity phosphopeptide 分子名称: DNA repair protein RAD9, Probable regulatory protein embR 著者 Futterer, K, Alderwick, L.J, Besra, G.S. 登録日 2005-12-19 公開日 2006-01-24 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Molecular structure of EmbR, a response element of Ser/Thr kinase signaling in Mycobacterium tuberculosis. Proc.Natl.Acad.Sci.Usa, 103, 2006
7PY7	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (NusA and NusG elongation complex in more-swiveled conformation) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zhu, C, Guo, X, Weixlbaumer, A. 登録日 2021-10-09 公開日 2022-03-23 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY5	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (the consensus NusA-NusG-EC) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zhu, C, Guo, X, Weixlbaumer, A. 登録日 2021-10-09 公開日 2022-03-23 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY6	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (NusA and NusG elongation complex in less-swiveled conformation) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zhu, C, Guo, X, Weixlbaumer, A. 登録日 2021-10-09 公開日 2022-03-23 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
5IYA	Human core-PIC in the closed state 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E. 登録日 2016-03-24 公開日 2016-05-18 最終更新日 2019-11-20 実験手法 ELECTRON MICROSCOPY (5.4 Å) 主引用文献 Near-atomic resolution visualization of human transcription promoter opening. Nature, 533, 2016
5IY8	Human holo-PIC in the initial transcribing state 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E. 登録日 2016-03-24 公開日 2016-05-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (7.9 Å) 主引用文献 Near-atomic resolution visualization of human transcription promoter opening. Nature, 533, 2016
5IY6	Human holo-PIC in the closed state 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E. 登録日 2016-03-24 公開日 2016-05-18 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (7.2 Å) 主引用文献 Near-atomic resolution visualization of human transcription promoter opening. Nature, 533, 2016
7PYK	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (NusA elongation complex in more-swiveled conformation) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zhu, C, Guo, X, Weixlbaumer, A. 登録日 2021-10-10 公開日 2022-03-23 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY3	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (the consensus NusA-EC) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zhu, C, Guo, X, Weixlbaumer, A. 登録日 2021-10-08 公開日 2022-03-23 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022

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