PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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4AND	CRYSTAL FORM II OF THE D93N MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Georgescauld, F, Moynie, L, Habersetzer, J, Lascu, I, Dautant, A. 登録日 2012-03-16 公開日 2013-03-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.808 Å) 主引用文献 Intersubunit Ionic Interactions Stabilize the Nucleoside Diphosphate Kinase of Mycobacterium Tuberculosis. Plos One, 8, 2013
9L22	hDEK-nucleosome complex (conformation 2) 分子名称: 601 DNA (189-MER), 601 DNA_R (189-MER), Histone H2A type 1-B/E, ... 著者 Liu, Y, Wang, C, Huang, H. 登録日 2024-12-16 公開日 2025-05-07 最終更新日 2025-06-18 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 DEK-nucleosome structure shows DEK modulates H3K27me3 and stem cell fate. Nat.Struct.Mol.Biol., 2025
9L1X	hDEK-nucleosome complex (conformation 1) 分子名称: 601 DNA (189-MER), 601 DNA_R (189-MER), Histone H2A type 1-B/E, ... 著者 Liu, Y, Wang, C, Huang, H. 登録日 2024-12-16 公開日 2025-05-07 最終更新日 2025-06-25 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 DEK-nucleosome structure shows DEK modulates H3K27me3 and stem cell fate. Nat.Struct.Mol.Biol., 2025
2MAS	PURINE NUCLEOSIDE HYDROLASE WITH A TRANSITION STATE INHIBITOR 分子名称: 2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL, CALCIUM ION, INOSINE-URIDINE NUCLEOSIDE N-RIBOHYDROLASE 著者 Degano, M, Schramm, V.L, Sacchettini, J.C. 登録日 1996-10-17 公開日 1997-08-12 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Trypanosomal nucleoside hydrolase. A novel mechanism from the structure with a transition-state inhibitor. Biochemistry, 37, 1998
2AZ3	Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum in complex with CDP 分子名称: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase 著者 Besir, H, Zeth, K, Bracher, A, Heider, U, Ishibashi, M, Tokunaga, M, Oesterhelt, D. 登録日 2005-09-09 公開日 2005-12-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum Febs Lett., 579, 2005
2AZ1	Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum 分子名称: CALCIUM ION, Nucleoside diphosphate kinase 著者 Besir, H, Zeth, K, Bracher, A, Heider, U, Ishibashi, M, Tokunaga, M, Oesterhelt, D. 登録日 2005-09-09 公開日 2005-12-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum Febs Lett., 579, 2005
2NCK	CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUBSTRATE AT 2.0 ANGSTROMS RESOLUTION 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Williams, R.L, Oren, D.A, Arnold, E. 登録日 1993-11-15 公開日 1994-01-31 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of Myxococcus xanthus nucleoside diphosphate kinase and its interaction with a nucleotide substrate at 2.0 A resolution. J.Mol.Biol., 234, 1993
5DW7	Crystal structure of the unliganded geosmin synthase N-terminal domain from Streptomyces coelicolor 分子名称: Germacradienol/geosmin synthase 著者 Lombardi, P.M, Harris, G.G, Pemberton, T.A, Matsui, T, Weiss, T.M, Cole, K.E, Koksal, M, Murphy, F.V, Vedula, L.S, Chou, W.K, Cane, D.E, Christianson, D.W. 登録日 2015-09-22 公開日 2015-11-25 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.202 Å) 主引用文献 Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence. Biochemistry, 54, 2015
1NCL	THERMAL STABILITY OF HEXAMERIC AND TETRAMERIC NUCLEOSIDE, DIPHOSPHATE KINASES 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Janin, J, Morera, S, Lascu, I. 登録日 1996-03-22 公開日 1996-11-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Thermal stability of hexameric and tetrameric nucleoside diphosphate kinases. Effect of subunit interaction. J.Biol.Chem., 271, 1996
1NUE	X-RAY STRUCTURE OF NM23 HUMAN NUCLEOSIDE DIPHOSPHATE KINASE B COMPLEXED WITH GDP AT 2 ANGSTROMS RESOLUTION 分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Morera, S, Lacombe, M.-L, Yingwu, X, Lebras, G, Janin, J. 登録日 1995-10-06 公開日 1996-04-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-ray structure of human nucleoside diphosphate kinase B complexed with GDP at 2 A resolution. Structure, 3, 1995
1W7W	Structure and mutational analysis of a plant mitochondrial nucleoside diphosphate kinase: identification of residues involved in serine phosphorylation and oligomerization. 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Johansson, M, MacKenzie-Hose, A, Andersson, I, Knorpp, C. 登録日 2004-09-13 公開日 2004-10-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure and Mutational Analysis of a Plant Mitochondrial Nucleoside Diphosphate Kinase: Identification of Residues Involved in Serine Phosphorylation and Oligomerisation Plant Physiol., 136, 2004
1LEO	P100S NUCLEOSIDE DIPHOSPHATE KINASE 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Janin, J, Xu, Y, Veron, M. 登録日 1996-05-22 公開日 1996-11-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Nucleoside diphosphate kinase. Investigation of the intersubunit contacts by site-directed mutagenesis and crystallography. J.Biol.Chem., 271, 1996
1NDK	X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Janin, J, Dumas, C, Morera, S, Lascu, I, Veron, M. 登録日 1993-07-15 公開日 1993-10-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 X-ray structure of nucleoside diphosphate kinase. EMBO J., 11, 1992
1NB2	Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans 分子名称: Nucleoside Diphosphate Kinase 著者 Chen, C.-J, Liu, M.-Y, Chang, W.-C, Chang, T, Wang, B.-C, Le Gall, J. 登録日 2002-12-02 公開日 2003-05-06 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of a nucleoside diphosphate kinase from Bacillus halodenitrificans: coexpression of its activity with a Mn-superoxide dismutase. J.Struct.Biol., 142, 2003
1NSK	THE CRYSTAL STRUCTURE OF A HUMAN NUCLEOSIDE DIPHOSPHATE KINASE, NM23-H2 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Williams, R.L, Perisic, O. 登録日 1995-07-04 公開日 1995-10-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The crystal structure of a human nucleoside diphosphate kinase, NM23-H2. J.Mol.Biol., 251, 1995
1VYA	Identification and characterization of the first plant G-quadruplex binding protein encoded by the Zea mays L. nucleoside diphosphate1 gene, ZmNDPK1 分子名称: Nucleoside diphosphate kinase 著者 Kopylov, M, Stroupe, M.E. 登録日 2014-08-14 公開日 2015-04-08 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The Maize (Zea mays L.) Nucleoside Diphosphate Kinase1 (ZmNDPK1) Gene Encodes a Human NM23-H2 Homologue That Binds and Stabilizes G-Quadruplex DNA. Biochemistry, 54, 2015
1NPK	REFINED X-RAY STRUCTURE OF DICTYOSTELIUM NUCLEOSIDE DIPHOSPHATE KINASE AT 1,8 ANGSTROMS RESOLUTION 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Janin, J, Morera, S, Lebras, G, Lascu, I, Veron, M. 登録日 1994-07-27 公開日 1994-11-01 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Refined X-ray structure of Dictyostelium discoideum nucleoside diphosphate kinase at 1.8 A resolution. J.Mol.Biol., 243, 1994
1MUT	NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE 分子名称: NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE 著者 Abeygunawardana, C, Weber, D.J, Gittis, A.G, Frick, D.N, Lin, J, Miller, A.-F, Bessman, M.J, Mildvan, A.S. 登録日 1995-09-14 公開日 1996-04-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the MutT enzyme, a nucleoside triphosphate pyrophosphohydrolase. Biochemistry, 34, 1995
8QKV	SWR1-nucleosome complex in configuration 2 分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ... 著者 Jalal, A.S.B, Wigley, D.B. 登録日 2023-09-18 公開日 2024-10-02 最終更新日 2025-07-09 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Nucleosome flipping drives kinetic proofreading and processivity by SWR1. Nature, 636, 2024
8QKU	SWR1-nucleosome complex in configuration 1 分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ... 著者 Jalal, A.S.B, Wigley, D.B. 登録日 2023-09-18 公開日 2024-10-02 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Nucleosome flipping drives kinetic proofreading and processivity by SWR1. Nature, 636, 2024
5MQF	Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ATP-dependent RNA helicase DHX8, Cell division cycle 5-like protein, ... 著者 Bertram, K, Hartmuth, K, Kastner, B. 登録日 2016-12-20 公開日 2017-03-22 最終更新日 2025-07-09 実験手法 ELECTRON MICROSCOPY (5.9 Å) 主引用文献 Cryo-EM structure of a human spliceosome activated for step 2 of splicing. Nature, 542, 2017
6QA2	R80A MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS 分子名称: Nucleoside diphosphate kinase, SULFATE ION, TRIS(HYDROXYETHYL)AMINOMETHANE 著者 Dautant, A, Henri, J, Wales, T.E, Meyer, P, Engen, J.R, Georgescauld, F. 登録日 2018-12-18 公開日 2019-02-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Remodeling of the Binding Site of Nucleoside Diphosphate Kinase Revealed by X-ray Structure and H/D Exchange. Biochemistry, 58, 2019
7DL9	Crystal structure of nucleoside transporter NupG 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Nucleoside permease NupG 著者 Wang, C, Xiao, Q.J, Deng, D. 登録日 2020-11-26 公開日 2021-04-07 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Molecular basis for substrate recognition by the bacterial nucleoside transporter NupG. J.Biol.Chem., 296, 2021
5XF3	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,R-configuration) 分子名称: (1R,2R)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
5XF5	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,S-configuration) 分子名称: (1S,2R)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017

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