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4AND
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BU of 4and by Molmil
CRYSTAL FORM II OF THE D93N MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Georgescauld, F, Moynie, L, Habersetzer, J, Lascu, I, Dautant, A.
登録日2012-03-16
公開日2013-03-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.808 Å)
主引用文献Intersubunit Ionic Interactions Stabilize the Nucleoside Diphosphate Kinase of Mycobacterium Tuberculosis.
Plos One, 8, 2013
9L22
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hDEK-nucleosome complex (conformation 2)
分子名称: 601 DNA (189-MER), 601 DNA_R (189-MER), Histone H2A type 1-B/E, ...
著者Liu, Y, Wang, C, Huang, H.
登録日2024-12-16
公開日2025-05-07
最終更新日2025-06-18
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献DEK-nucleosome structure shows DEK modulates H3K27me3 and stem cell fate.
Nat.Struct.Mol.Biol., 2025
9L1X
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hDEK-nucleosome complex (conformation 1)
分子名称: 601 DNA (189-MER), 601 DNA_R (189-MER), Histone H2A type 1-B/E, ...
著者Liu, Y, Wang, C, Huang, H.
登録日2024-12-16
公開日2025-05-07
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (2.69 Å)
主引用文献DEK-nucleosome structure shows DEK modulates H3K27me3 and stem cell fate.
Nat.Struct.Mol.Biol., 2025
2MAS
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BU of 2mas by Molmil
PURINE NUCLEOSIDE HYDROLASE WITH A TRANSITION STATE INHIBITOR
分子名称: 2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL, CALCIUM ION, INOSINE-URIDINE NUCLEOSIDE N-RIBOHYDROLASE
著者Degano, M, Schramm, V.L, Sacchettini, J.C.
登録日1996-10-17
公開日1997-08-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Trypanosomal nucleoside hydrolase. A novel mechanism from the structure with a transition-state inhibitor.
Biochemistry, 37, 1998
2AZ3
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Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum in complex with CDP
分子名称: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Besir, H, Zeth, K, Bracher, A, Heider, U, Ishibashi, M, Tokunaga, M, Oesterhelt, D.
登録日2005-09-09
公開日2005-12-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum
Febs Lett., 579, 2005
2AZ1
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Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum
分子名称: CALCIUM ION, Nucleoside diphosphate kinase
著者Besir, H, Zeth, K, Bracher, A, Heider, U, Ishibashi, M, Tokunaga, M, Oesterhelt, D.
登録日2005-09-09
公開日2005-12-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum
Febs Lett., 579, 2005
2NCK
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BU of 2nck by Molmil
CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUBSTRATE AT 2.0 ANGSTROMS RESOLUTION
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Williams, R.L, Oren, D.A, Arnold, E.
登録日1993-11-15
公開日1994-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of Myxococcus xanthus nucleoside diphosphate kinase and its interaction with a nucleotide substrate at 2.0 A resolution.
J.Mol.Biol., 234, 1993
5DW7
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BU of 5dw7 by Molmil
Crystal structure of the unliganded geosmin synthase N-terminal domain from Streptomyces coelicolor
分子名称: Germacradienol/geosmin synthase
著者Lombardi, P.M, Harris, G.G, Pemberton, T.A, Matsui, T, Weiss, T.M, Cole, K.E, Koksal, M, Murphy, F.V, Vedula, L.S, Chou, W.K, Cane, D.E, Christianson, D.W.
登録日2015-09-22
公開日2015-11-25
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.202 Å)
主引用文献Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.
Biochemistry, 54, 2015
1NCL
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BU of 1ncl by Molmil
THERMAL STABILITY OF HEXAMERIC AND TETRAMERIC NUCLEOSIDE, DIPHOSPHATE KINASES
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Janin, J, Morera, S, Lascu, I.
登録日1996-03-22
公開日1996-11-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Thermal stability of hexameric and tetrameric nucleoside diphosphate kinases. Effect of subunit interaction.
J.Biol.Chem., 271, 1996
1NUE
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BU of 1nue by Molmil
X-RAY STRUCTURE OF NM23 HUMAN NUCLEOSIDE DIPHOSPHATE KINASE B COMPLEXED WITH GDP AT 2 ANGSTROMS RESOLUTION
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
著者Morera, S, Lacombe, M.-L, Yingwu, X, Lebras, G, Janin, J.
登録日1995-10-06
公開日1996-04-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray structure of human nucleoside diphosphate kinase B complexed with GDP at 2 A resolution.
Structure, 3, 1995
1W7W
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BU of 1w7w by Molmil
Structure and mutational analysis of a plant mitochondrial nucleoside diphosphate kinase: identification of residues involved in serine phosphorylation and oligomerization.
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Johansson, M, MacKenzie-Hose, A, Andersson, I, Knorpp, C.
登録日2004-09-13
公開日2004-10-22
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure and Mutational Analysis of a Plant Mitochondrial Nucleoside Diphosphate Kinase: Identification of Residues Involved in Serine Phosphorylation and Oligomerisation
Plant Physiol., 136, 2004
1LEO
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BU of 1leo by Molmil
P100S NUCLEOSIDE DIPHOSPHATE KINASE
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Janin, J, Xu, Y, Veron, M.
登録日1996-05-22
公開日1996-11-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Nucleoside diphosphate kinase. Investigation of the intersubunit contacts by site-directed mutagenesis and crystallography.
J.Biol.Chem., 271, 1996
1NDK
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BU of 1ndk by Molmil
X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Janin, J, Dumas, C, Morera, S, Lascu, I, Veron, M.
登録日1993-07-15
公開日1993-10-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献X-ray structure of nucleoside diphosphate kinase.
EMBO J., 11, 1992
1NB2
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BU of 1nb2 by Molmil
Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans
分子名称: Nucleoside Diphosphate Kinase
著者Chen, C.-J, Liu, M.-Y, Chang, W.-C, Chang, T, Wang, B.-C, Le Gall, J.
登録日2002-12-02
公開日2003-05-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a nucleoside diphosphate kinase from Bacillus halodenitrificans: coexpression of its activity with a Mn-superoxide dismutase.
J.Struct.Biol., 142, 2003
1NSK
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BU of 1nsk by Molmil
THE CRYSTAL STRUCTURE OF A HUMAN NUCLEOSIDE DIPHOSPHATE KINASE, NM23-H2
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Williams, R.L, Perisic, O.
登録日1995-07-04
公開日1995-10-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The crystal structure of a human nucleoside diphosphate kinase, NM23-H2.
J.Mol.Biol., 251, 1995
1VYA
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BU of 1vya by Molmil
Identification and characterization of the first plant G-quadruplex binding protein encoded by the Zea mays L. nucleoside diphosphate1 gene, ZmNDPK1
分子名称: Nucleoside diphosphate kinase
著者Kopylov, M, Stroupe, M.E.
登録日2014-08-14
公開日2015-04-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The Maize (Zea mays L.) Nucleoside Diphosphate Kinase1 (ZmNDPK1) Gene Encodes a Human NM23-H2 Homologue That Binds and Stabilizes G-Quadruplex DNA.
Biochemistry, 54, 2015
1NPK
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BU of 1npk by Molmil
REFINED X-RAY STRUCTURE OF DICTYOSTELIUM NUCLEOSIDE DIPHOSPHATE KINASE AT 1,8 ANGSTROMS RESOLUTION
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Janin, J, Morera, S, Lebras, G, Lascu, I, Veron, M.
登録日1994-07-27
公開日1994-11-01
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Refined X-ray structure of Dictyostelium discoideum nucleoside diphosphate kinase at 1.8 A resolution.
J.Mol.Biol., 243, 1994
1MUT
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BU of 1mut by Molmil
NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE
分子名称: NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE
著者Abeygunawardana, C, Weber, D.J, Gittis, A.G, Frick, D.N, Lin, J, Miller, A.-F, Bessman, M.J, Mildvan, A.S.
登録日1995-09-14
公開日1996-04-03
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the MutT enzyme, a nucleoside triphosphate pyrophosphohydrolase.
Biochemistry, 34, 1995
8QKV
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BU of 8qkv by Molmil
SWR1-nucleosome complex in configuration 2
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ...
著者Jalal, A.S.B, Wigley, D.B.
登録日2023-09-18
公開日2024-10-02
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Nucleosome flipping drives kinetic proofreading and processivity by SWR1.
Nature, 636, 2024
8QKU
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BU of 8qku by Molmil
SWR1-nucleosome complex in configuration 1
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ...
著者Jalal, A.S.B, Wigley, D.B.
登録日2023-09-18
公開日2024-10-02
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Nucleosome flipping drives kinetic proofreading and processivity by SWR1.
Nature, 636, 2024
5MQF
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BU of 5mqf by Molmil
Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ATP-dependent RNA helicase DHX8, Cell division cycle 5-like protein, ...
著者Bertram, K, Hartmuth, K, Kastner, B.
登録日2016-12-20
公開日2017-03-22
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (5.9 Å)
主引用文献Cryo-EM structure of a human spliceosome activated for step 2 of splicing.
Nature, 542, 2017
6QA2
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R80A MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS
分子名称: Nucleoside diphosphate kinase, SULFATE ION, TRIS(HYDROXYETHYL)AMINOMETHANE
著者Dautant, A, Henri, J, Wales, T.E, Meyer, P, Engen, J.R, Georgescauld, F.
登録日2018-12-18
公開日2019-02-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Remodeling of the Binding Site of Nucleoside Diphosphate Kinase Revealed by X-ray Structure and H/D Exchange.
Biochemistry, 58, 2019
7DL9
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Crystal structure of nucleoside transporter NupG
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Nucleoside permease NupG
著者Wang, C, Xiao, Q.J, Deng, D.
登録日2020-11-26
公開日2021-04-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular basis for substrate recognition by the bacterial nucleoside transporter NupG.
J.Biol.Chem., 296, 2021
5XF3
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Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,R-configuration)
分子名称: (1R,2R)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ...
著者Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A.
登録日2017-04-07
公開日2017-10-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
Nat Commun, 8, 2017
5XF5
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Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,S-configuration)
分子名称: (1S,2R)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ...
著者Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A.
登録日2017-04-07
公開日2017-10-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
Nat Commun, 8, 2017

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