PDB: 45385 件ウェブページステータス検索Chemie searchBIRD

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1P2H	H61M mutant of flavocytochrome c3 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, MALATE LIKE INTERMEDIATE, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Rothery, E.L, Mowat, C.G, Miles, C.S, Walkinshaw, M.D, Reid, G.A, Chapman, S.K. 登録日 2003-04-15 公開日 2003-11-25 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Histidine 61: An Important Heme Ligand in the Soluble Fumarate Reductase from Shewanella frigidimarina Biochemistry, 42, 2003
1ORN	Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3', ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2003-03-14 公開日 2003-07-15 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure of a Trapped Endonuclease III-DNA Covalent Intermediate Embo J., 22, 2003
2QQV	Crystal structure of a cell-wall invertase (E203A) from Arabidopsis thaliana in complex with sucrose 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-fructofuranosidase, ... 著者 Lammens, W, Le Roy, K, Van Laere, A, Rabijns, A, Van den Ende, W. 登録日 2007-07-27 公開日 2008-04-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Crystal structures of Arabidopsis thaliana cell-wall invertase mutants in complex with sucrose. J.Mol.Biol., 377, 2008
1QJD	Flavocytochrome C3 from Shewanella frigidimarina 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FLAVOCYTOCHROME C3, GLYCEROL, ... 著者 Taylor, P, Pealing, S.L, Reid, G.A, Chapman, S.K, Walkinshaw, M.D. 登録日 1999-06-23 公開日 1999-11-21 最終更新日 2019-05-22 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural and Mechanistic Mapping of a Unique Fumarate Reductase Nat.Struct.Biol., 6, 1999
2QZ2	Crystal structure of a glycoside hydrolase family 11 xylanase from Aspergillus niger in complex with xylopentaose 分子名称: Endo-1,4-beta-xylanase I, SODIUM ION, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ... 著者 Vandermarliere, E, Rombouts, S, Strelkov, S.V, Delcour, J.A, Courtin, C.M, Rabijns, A. 登録日 2007-08-16 公開日 2007-12-25 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystallographic analysis shows substrate binding at the -3 to +1 active-site subsites and at the surface of glycoside hydrolase family 11 endo-1,4-beta-xylanases. Biochem.J., 410, 2008
2R21	Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.6 A (BrMn) 分子名称: MANGANESE (II) ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION 著者 Timsit, Y, Bombard, S. 登録日 2007-08-24 公開日 2007-09-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 1.3 A resolution Structure of the tridecamer r(GCGUUUGAAACGC) TO BE PUBLISHED
3QTO	Thrombin Inhibition by Pyridin Derivatives 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(1-methylpyridinium-3-yl)methyl]-L-prolinamide, GLYCEROL, ... 著者 Biela, A, Heine, A, Klebe, G. 登録日 2011-02-23 公開日 2012-02-29 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Impact of ligand and protein desolvation on ligand binding to the S1 pocket of thrombin J.Mol.Biol., 418, 2012
131D	THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SODIUM ION, SPERMINE 著者 Bancroft, D, Williams, L.D, Rich, A, Egli, M. 登録日 1993-06-18 公開日 1993-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove. Biochemistry, 33, 1994
3RMN	Human Thrombin in complex with MI341 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Hirudin variant-2, ... 著者 Biela, A, Heine, A, Klebe, G. 登録日 2011-04-21 公開日 2012-04-25 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Ligand binding stepwise disrupts water network in thrombin: enthalpic and entropic changes reveal classical hydrophobic effect J.Med.Chem., 55, 2012
1A4W	CRYSTAL STRUCTURES OF THROMBIN WITH THIAZOLE-CONTAINING INHIBITORS: PROBES OF THE S1' BINDING SITE 分子名称: ALPHA-THROMBIN (LARGE SUBUNIT), ALPHA-THROMBIN (SMALL SUBUNIT), HIRUGEN, ... 著者 Matthews, J.H, Krishnan, R, Costanzo, M.J, Maryanoff, B.E, Tulinsky, A. 登録日 1998-02-06 公開日 1998-04-29 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structures of thrombin with thiazole-containing inhibitors: probes of the S1' binding site. Biophys.J., 71, 1996
1BB0	THROMBIN INHIBITORS WITH RIGID TRIPEPTIDYL ALDEHYDES 分子名称: 2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3R)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide, HIRUGEN, SODIUM ION, ... 著者 Krishnan, R, Zhang, E, Hakansson, K, Arni, R.K, Tulinsky, A, Lim-Wilby, M.S.L, Levy, O.E, Semple, J.E, Brunck, T.K. 登録日 1998-04-28 公開日 1999-04-27 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Highly selective mechanism-based thrombin inhibitors: structures of thrombin and trypsin inhibited with rigid peptidyl aldehydes. Biochemistry, 37, 1998
3Q2P	Reduced sweetness of a monellin (MNEI) mutant results from increased protein flexibility and disruption of a distant poly-(L-proline) II helix 分子名称: Monellin chain B/Monellin chain A chimeric protein, SODIUM ION 著者 Templeton, C.M, Hobbs, J.R, Munger, S.D, Conn, G.L. 登録日 2010-12-20 公開日 2011-04-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.341 Å) 主引用文献 Reduced Sweetness of a Monellin (MNEI) Mutant Results from Increased Protein Flexibility and Disruption of a Distant Poly-(L-Proline) II Helix. Chem Senses, 36, 2011
3QX5	Thrombin Inhibition by Pyridin Derivatives 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(4-chloro-1-methylpyridinium-2-yl)methyl]-L-prolinamide, GLYCEROL, ... 著者 Biela, A, Heine, A, Klebe, G. 登録日 2011-03-01 公開日 2012-03-07 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Impact of ligand and protein desolvation on ligand binding to the S1 pocket of thrombin J.Mol.Biol., 418, 2012
1C1X	L-PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND L-3-PHENYLLACTATE 分子名称: ALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID, ISOPROPYL ALCOHOL, L-PHENYLALANINE DEHYDROGENASE, ... 著者 Vanhooke, J.L, Thoden, J.B. 登録日 1999-07-22 公開日 2000-08-30 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Rhodococcus L-phenylalanine dehydrogenase: kinetics, mechanism, and structural basis for catalytic specificity. Biochemistry, 39, 2000
3SIS	Crystal structure of Porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3_Gc 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, N-glycolyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, Outer capsid protein VP4, ... 著者 Blanchard, H, Yu, X. 登録日 2011-06-20 公開日 2011-09-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Novel structural insights into rotavirus recognition of ganglioside glycan receptors. J.Mol.Biol., 413, 2011
1BPZ	HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ... 著者 Sawaya, M.R, Prasad, R, Wilson, S.H, Kraut, J, Pelletier, H. 登録日 1997-04-14 公開日 1997-06-16 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism. Biochemistry, 36, 1997
3RUH	Alternative analogs as viable substrates of UDP-hexose 4-epimerases 分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, SULFATE ION, ... 著者 Bhatt, V.S, Guan, W, Wang, P.G. 登録日 2011-05-05 公開日 2011-05-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.88 Å) 主引用文献 Alternative analogs as viable substrates of UDP-hexose 4-epimerases TO BE PUBLISHED
1BPX	DNA POLYMERASE BETA/DNA COMPLEX 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ... 著者 Sawaya, M.R, Prasad, R, Wilson, S.H, Kraut, J, Pelletier, H. 登録日 1997-04-11 公開日 1997-06-16 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism. Biochemistry, 36, 1997
3RWK	First crystal structure of an endo-inulinase, from Aspergillus ficuum: structural analysis and comparison with other GH32 enzymes. 分子名称: ACETATE ION, Inulinase, SODIUM ION, ... 著者 Michaux, C, Pouyez, J, Roussel, G, Mayard, A, Vandamme, A.M, Housen, I, Wouters, J. 登録日 2011-05-09 公開日 2012-07-18 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 First crystal structure of an endo-inulinase, INU2, from Aspergillus ficuum: Discovery of an extra-pocket in the catalytic domain responsible for its endo-activity. Biochimie, 94, 2012
8OXS	Cholera holotoxin variant (chimera with E. coli heat-labile enterotoxin, 4 C-terminal substitutions) 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cholera enterotoxin subunit A, Cholera enterotoxin subunit B, ... 著者 Kersten, F, Heim, J.B, Cordara, G, Krengel, U. 登録日 2023-05-02 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Cholera toxin variants To Be Published
8PJ3	Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3) 分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N. 登録日 2023-06-22 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining Nat.Struct.Mol.Biol., 2024
8PJ4	Structure of human 48S translation initiation complex after eIF5 release (48S-4) 分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N. 登録日 2023-06-22 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining Nat.Struct.Mol.Biol., 2024
3S41	Glucokinase in complex with activator and glucose 分子名称: Glucokinase, N,N-dimethyl-5-({2-methyl-6-[(5-methylpyrazin-2-yl)carbamoyl]-1-benzofuran-4-yl}oxy)pyrimidine-2-carboxamide, SODIUM ION, ... 著者 Liu, S. 登録日 2011-05-18 公開日 2011-09-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Designing glucokinase activators with reduced hypoglycemia risk: discovery of N,N-dimethyl-5-(2-methyl-6-((5-methylpyrazin-2-yl)-carbamoyl)benzofuran-4-yloxy)pyrimidine-2-carboxamide as a clinical candidate for the treatment of type 2 diabetes mellitus MEDCHEMCOMM, 2, 2011
3RLW	Human Thrombin in complex with MI328 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Hirudin variant-2, ... 著者 Biela, A, Heine, A, Klebe, G. 登録日 2011-04-20 公開日 2012-04-25 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Ligand binding stepwise disrupts water network in thrombin: enthalpic and entropic changes reveal classical hydrophobic effect J.Med.Chem., 55, 2012
3SP3	Lysozyme in 20% sucrose 分子名称: CHLORIDE ION, Lysozyme, SODIUM ION, ... 著者 Sharma, P, Solanki, A.K, Ashish 登録日 2011-07-01 公開日 2011-07-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.801 Å) 主引用文献 Lysozyme in 20% sucrose to be published

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