PDB: 217686 件ウェブページステータス検索Chemie searchBIRD

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8VAL	Structure of the E. coli clamp loader bound to the beta clamp in a Open-DNAp/t conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
7AAD	Crystal structure of the catalytic domain of human PARP1 in complex with olaparib 分子名称: 4-(3-{[4-(cyclopropylcarbonyl)piperazin-1-yl]carbonyl}-4-fluorobenzyl)phthalazin-1(2H)-one, Poly [ADP-ribose] polymerase 1, SULFATE ION 著者 Schimpl, M, Ogden, T.E.H, Yang, J.-C, Easton, L.E, Underwood, E, Rawlins, P.B, Johannes, J.W, Embrey, K.J, Neuhaus, D. 登録日 2020-09-04 公開日 2021-01-13 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Dynamics of the HD regulatory subdomain of PARP-1; substrate access and allostery in PARP activation and inhibition. Nucleic Acids Res., 49, 2021
8WM7	Cryo-EM structure of cyanobacterial nitrate/nitrite transporter NrtBCD in complex with signalling protein PII 分子名称: ADENOSINE-5'-DIPHOSPHATE, Nitrate transport ATP-binding protein, Nitrate transport permease protein, ... 著者 Li, B, Zhou, C.Z, Chen, Y.X, Jiang, Y.L. 登録日 2023-10-03 公開日 2024-02-28 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.53 Å) 主引用文献 Allosteric regulation of nitrate transporter NRT via the signaling protein PII. Proc.Natl.Acad.Sci.USA, 121, 2024
8ZOZ	Crystal structure of the complex of glyceraldehyde-3-phosphate dehydrogenase of type B from Acinetobacter baumannii with Adenosine monophosphate at 3.20 A resolution. 分子名称: ADENOSINE MONOPHOSPHATE, Glyceraldehyde-3-phosphate dehydrogenase, SULFATE ION 著者 Pahuja, P, Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Sharma, S, Raje, C.I, Singh, T.P. 登録日 2024-05-29 公開日 2024-06-12 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structure of the complex of glyceraldehyde-3-phosphate dehydrogenase of type B from Acinetobacter baumannii with Adenosine monophosphate at 3.20 A resolution. To Be Published
6ZT8	X-ray structure of mutated arabinofuranosidase 分子名称: Alpha-L-arabinofuranosidase, CHLORIDE ION, PENTAETHYLENE GLYCOL, ... 著者 Tandrup, T, Lo Leggio, L, Zhao, J, Bissaro, B, Barbe, S, Andre, I, Dumon, C, O'Donohue, M.J, Faure, R. 登録日 2020-07-17 公開日 2021-02-10 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Probing the determinants of the transglycosylation/hydrolysis partition in a retaining alpha-l-arabinofuranosidase. N Biotechnol, 62, 2021
8VAQ	Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA1 conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAP	Structure of the E. coli clamp loader bound to the beta clamp in a Fully-Open conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8Y6V	Near-atomic structure of icosahedrally averaged jumbo bacteriophage PhiKZ capsid 分子名称: gp119, gp120, gp162, ... 著者 Yang, Y, Shao, Q, Guo, M, Han, L, Zhao, X, Wang, A, Li, X, Wang, B, Pan, J, Chen, Z, Fokine, A, Sun, L, Fang, Q. 登録日 2024-02-03 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Capsid structure of bacteriophage Phi KZ provides insights into assembly and stabilization of jumbo phages. Nat Commun, 15, 2024
8VAT	Structure of the E. coli clamp loader bound to the beta clamp in a Open-RNAp/t conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VZ9	Crystal structure of mouse MAIT M2A TCR-MR1-5-OP-RU complex 分子名称: 1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, Beta-2-microglobulin, GLYCEROL, ... 著者 Ciacchi, L, Rossjohn, J, Awad, W. 登録日 2024-02-11 公開日 2024-04-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Mouse mucosal-associated invariant T cell receptor recognition of MR1 presenting the vitamin B metabolite, 5-(2-oxopropylideneamino)-6-d-ribitylaminouracil. J.Biol.Chem., 300, 2024
4V2I	Biochemical characterization and structural analysis of a new cold- active and salt tolerant esterase from the marine bacterium Thalassospira sp 分子名称: ESTERASE/LIPASE, MAGNESIUM ION 著者 Santi, C.D, Leiros, H.-K.S, Scala, A.D, Pascale, D.D, Altermark, B, Willassen, N.-P. 登録日 2014-10-10 公開日 2016-01-13 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.686 Å) 主引用文献 Biochemical Characterization and Structural Analysis of a New Cold-Active and Salt-Tolerant Esterase from the Marine Bacterium Thalassospira Sp. Extremophiles, 20, 2016
8VAN	Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation 分子名称: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... 著者 Landeck, J.T, Pajak, J, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
9ER3	Cyanide dihydratase from Bacillus pumilus C1 E155R variant with altered helical twist. 分子名称: Cyanide dihydratase 著者 Dlamini, L.S, Woodward, J.D, Sewell, B.T. 登録日 2024-03-22 公開日 2024-04-10 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Cyanide dihydratase from Bacillus pumilus C1 E155R variant with altered helical twist To Be Published
9C81	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: (2R)-2-phenoxy-3-{[(1S,2S,4S)-spiro[bicyclo[2.2.1]heptane-7,1'-cyclopropane]-2-carbonyl]amino}propanoic acid, AmpC Beta-lactamase 著者 Liu, F, Shoichet, B.K, Bassim, V. 登録日 2024-06-11 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
5JR8	Disposal of Iron by a Mutant form of Siderocalin NGAL 分子名称: GLYCEROL, Neutrophil gelatinase-associated lipocalin, PHOSPHATE ION 著者 Rupert, P.B, Strong, R.K, Barasch, J, Hollman, M, Deng, R, Hod, E.A, Abergel, R, Allred, B, Xu, K, Darrah, S, Tekabe, Y, Perlstein, A, Bruck, E, Stauber, J, Corbin, K, Buchen, C, Slavkovich, V, Graziano, J, Spitalnik, S, Qiu, A. 登録日 2016-05-05 公開日 2016-09-28 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Disposal of iron by a mutant form of lipocalin 2. Nat Commun, 7, 2016
9C6P	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: 3-chloro-N-(5-chloro-2-methyl-1,3-benzothiazol-6-yl)-2-hydroxybenzene-1-sulfonamide, AmpC Beta-lactamase 著者 Liu, F, Shoichet, B.K. 登録日 2024-06-08 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.663 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
8WIU	Bromodomain and Extra-terminal Domain (BET) BRD4 分子名称: 7-[5-[1-(cyclopropylmethyl)-3,5-dimethyl-pyrazol-4-yl]pyridin-3-yl]-1~{H}-imidazo[4,5-b]pyridine, Isoform C of Bromodomain-containing protein 4 著者 Cao, D, Zhiyan, D, Xiong, B. 登録日 2023-09-25 公開日 2024-01-03 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Discovery of a brain-permeable bromodomain and extra terminal domain (BET) inhibitor with selectivity for BD1 for the treatment of multiple sclerosis. Eur.J.Med.Chem., 265, 2023
8VAM	Structure of the E. coli clamp loader bound to the beta clamp in a Semi-Open conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
9C8J	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: AmpC Beta-lactamase, N-(1-acetyl-2,3-dihydro-1H-indol-4-yl)-3-chloro-2-hydroxybenzene-1-sulfonamide 著者 Liu, F, Shoichet, B.K. 登録日 2024-06-12 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
8VAS	Structure of the E. coli clamp loader bound to the beta clamp in an Altered-Collar conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
9EM2	OPR3 wild type in its dimeric form obtained without sulfate 分子名称: 12-oxophytodienoate reductase 3, FLAVIN MONONUCLEOTIDE, L(+)-TARTARIC ACID 著者 Bijelic, A, Macheroux, P, Kerschbaumer, B. 登録日 2024-03-07 公開日 2024-08-14 最終更新日 2024-08-21 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Analysis of homodimer formation in 12-oxophytodienoate reductase 3 in solutio and crystallo challenges the physiological role of the dimer. Sci Rep, 14, 2024
7P81	Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state) 分子名称: ADEP2, ATP-dependent Clp protease proteolytic subunit 著者 Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. 登録日 2021-07-21 公開日 2022-06-29 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
9FJK	Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6 分子名称: K501SP6 Fv Heavy Chain, K501SP6 Fv Light Chain, Spike glycoprotein,Fibritin 著者 Bjoernsson, K.H, Walker, M.R, Raghavan, S.S.R, Ward, A.B, Barfod, L.K. 登録日 2024-05-31 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (2.84 Å) 主引用文献 Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6 To Be Published
8VAR	Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA2 conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
9FQ2	Poliovirus 3C protease in H32 spacegroup 分子名称: Protease 3C 著者 Fairhead, M, Lithgo, R.M, MacLean, E.M, Bowesman-Jones, H, Aschenbrenner, J.C, Balcomb, B.H, Capkin, E, Chandran, A.V, Godoy, A.S, Marples, P.G, Fearon, D, von Delft, F, Koekemoer, L. 登録日 2024-06-14 公開日 2024-06-26 実験手法 X-RAY DIFFRACTION (2.37 Å) 主引用文献 Poliovirus 3C protease in H32 spacegroup To Be Published

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