PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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6IIW	Crystal structure of human UHRF1 PHD finger in complex with PAF15 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, E3 ubiquitin-protein ligase UHRF1, PCNA-associated factor, ... 著者 Arita, K, Kori, S. 登録日 2018-10-07 公開日 2019-10-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.699 Å) 主引用文献 Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nat Commun, 11, 2020
6IBG	Bacteriophage G20c portal protein crystal structure for construct with intact N-terminus 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Portal protein 著者 Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A. 登録日 2018-11-30 公開日 2019-01-23 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
2RNN	Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Saccharomyces cerevisiae 分子名称: E3 SUMO-protein ligase SIZ1 著者 Suzuki, R, Shindo, H, Tase, A, Yamazaki, T. 登録日 2008-01-30 公開日 2008-12-30 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa. Proteins, 75, 2009
6JJF	Crystal structure of a two-quartet DNA mixed-parallel/antiparallel G-quadruplex 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*CP*TP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3'), POTASSIUM ION, ... 著者 Zhang, Y.S, EI Omari, K, Duman, R, Wagner, A, Parkinson, G.N, Wei, D.G. 登録日 2019-02-25 公開日 2020-02-26 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths. Nucleic Acids Res., 48, 2020
6I9E	Thermophage P23-45 empty expanded capsid 分子名称: Auxiliary protein, Major head protein 著者 Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A. 登録日 2018-11-23 公開日 2019-02-06 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.74 Å) 主引用文献 Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
2W82	The structure of ArdA 分子名称: ORF18 著者 McMahon, S.A, Roberts, G.A, Carter, L.G, Cooper, L.P, Liu, H, White, J.H, Johnson, K.A, Sanghvi, B, Oke, M, Walkinshaw, M.D, Blakely, G, Naismith, J.H, Dryden, D.T.F. 登録日 2009-01-08 公開日 2009-01-27 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Extensive DNA Mimicry by the Arda Anti-Restriction Protein and its Role in the Spread of Antibiotic Resistance. Nucleic Acids Res., 37, 2009
2V0S	crystal structure of a hairpin exchange variant (LR1) of the targeting LINE-1 retrotransposon endonuclease 分子名称: GLYCEROL, LR1, MANGANESE (II) ION, ... 著者 Repanas, K, Zingler, N, Layer, L.E, Schumann, G.G, Perrakis, A, Weichenrieder, O. 登録日 2007-05-17 公開日 2007-07-17 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Determinants for DNA Target Structure Selectivity of the Human Line-1 Retrotransposon Endonuclease. Nucleic Acids Res., 35, 2007
7ZQS	Cryo-EM Structure of Human Transferrin Receptor 1 bound to DNA Aptamer 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (30-MER), ... 著者 Bansia, H, Wang, T, Gutierrez, D, des Georges, A. 登録日 2022-05-02 公開日 2022-08-17 実験手法 ELECTRON MICROSCOPY (2.54 Å) 主引用文献 Discovery of a Transferrin Receptor 1-Binding Aptamer and Its Application in Cancer Cell Depletion for Adoptive T-Cell Therapy Manufacturing. J.Am.Chem.Soc., 144, 2022
2V0R	crystal structure of a hairpin exchange variant (LTx) of the targeting LINE-1 retrotransposon endonuclease 分子名称: LTX, SULFATE ION 著者 Repanas, K, Zingler, N, Layer, L.E, Schumann, G.G, Perrakis, A, Weichenrieder, O. 登録日 2007-05-17 公開日 2007-07-17 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Determinants for DNA Target Structure Selectivity of the Human Line-1 Retrotransposon Endonuclease Nucleic Acids Res., 35, 2007
6IBC	Thermophage P23-45 procapsid 分子名称: Major head protein 著者 Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A. 登録日 2018-11-29 公開日 2019-02-13 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.39 Å) 主引用文献 Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6GT7	NMR structure of the free helix bundle domain from the functional pRN1 primase 分子名称: functional pRN1 primase 著者 Boudet, J, Lipps, G, Allain, F. 登録日 2018-06-15 公開日 2018-12-26 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template. Cell, 176, 2019
1Z6A	Sulfolobus solfataricus SWI2/SNF2 ATPase core domain 分子名称: Helicase of the snf2/rad54 family, MERCURY (II) ION, PHOSPHATE ION 著者 Duerr, H, Koerner, C, Mueller, M, Hickmann, V, Hopfner, K.P. 登録日 2005-03-22 公開日 2005-05-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA Cell(Cambridge,Mass.), 121, 2005
7YI9	Cryo-EM structure of SAM-bound MTA1-MTA9-p1-p2 complex 分子名称: MT-a70 family protein, MTA9, P1, ... 著者 Yan, J.J, Guan, Z.Y, Liu, F.Q, Yan, X.H, Hou, M.J, Yin, P. 登録日 2022-07-15 公開日 2023-01-18 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structural insights into DNA N 6 -adenine methylation by the MTA1 complex. Cell Discov, 9, 2023
7YI8	Cryo-EM structure of SAH-bound MTA1-MTA9-p1-p2 complex 分子名称: MT-a70 family protein, MTA9, P1, ... 著者 Yan, J.J, Guan, Z.Y, Liu, F.Q, Yan, X.H, Hou, M.J, Yin, P. 登録日 2022-07-15 公開日 2023-01-18 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural insights into DNA N 6 -adenine methylation by the MTA1 complex. Cell Discov, 9, 2023
2LLA	NMR solution structure ensemble of domain 11 of the echidna M6P/IGF2R receptor 分子名称: Mannose-6-phosphate/insulin-like growth factor II receptor 著者 Strickland, M, Crump, M.P, Williams, C, Rezgui, D, Ellis, R.Z, Hoppe, H, Frago, S, Prince, S.N, Zaccheo, O.J, Forbes, B.E, Jones, E, Hassan, A.Z, Wattana-Amorn, P. 登録日 2011-11-05 公開日 2012-11-07 最終更新日 2012-12-12 実験手法 SOLUTION NMR 主引用文献 An exon splice enhancer primes IGF2:IGF2R binding site structure and function evolution. Science, 338, 2012
6ES8	HIV capsid hexamer with IP6 ligand 分子名称: Gag protein, INOSITOL HEXAKISPHOSPHATE 著者 James, L.C. 登録日 2017-10-19 公開日 2018-08-15 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis. Elife, 7, 2018
2MX0	Solution structure of HP0268 from Helicobacter pylori 分子名称: Uncharacterized protein HP_0268 著者 Lee, K.Y. 登録日 2014-12-05 公開日 2015-12-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure-based functional identification of Helicobacter pylori HP0268 as a nuclease with both DNA nicking and RNase activities Nucleic Acids Res., 43, 2015
6FLF	Deoxyguanylosuccinate synthase (DgsS) structure at 1.33 Angstrom resolution. 分子名称: Adenylosuccinate synthetase 著者 Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A. 登録日 2018-01-25 公開日 2019-06-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.33 Å) 主引用文献 A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes. Science, 372, 2021
6FM1	Deoxyguanylosuccinate synthase (DgsS) quaternary structure with ATPanddGMP at 2.3 Angstrom resolution 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Adenylosuccinate synthetase, ... 著者 Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A. 登録日 2018-01-29 公開日 2019-06-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes. Science, 372, 2021
1S16	Crystal Structure of E. coli Topoisomerase IV ParE 43kDa subunit complexed with ADPNP 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SULFATE ION, ... 著者 Wei, Y, Gross, C.H. 登録日 2004-01-05 公開日 2004-05-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structures of Escherichia coli topoisomerase IV ParE subunit (24 and 43 kilodaltons): a single residue dictates differences in novobiocin potency against topoisomerase IV and DNA gyrase. Antimicrob.Agents Chemother., 48, 2004
6FM0	Deoxyguanylosuccinate synthase (DgsS) and ATP structure at 1.7 Angstrom resolution 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Adenylosuccinate synthetase 著者 Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A. 登録日 2018-01-29 公開日 2019-06-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes. Science, 372, 2021
6EIH	The crystal structure of 14-3-3 epsilon in complex with the phosphorylated NELFE peptide 分子名称: 14-3-3 protein epsilon, SER-ILE-SEP-ARG 著者 Akutsu, M, Wagner, S.A, Beli, P. 登録日 2017-09-19 公開日 2018-02-14 最終更新日 2019-10-16 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage. Nat Commun, 9, 2018
4C8H	Crystal structure of the C-terminal region of yeast Ctf4, selenomethionine protein. 分子名称: CTF4 著者 Simon, A.C, Pellegrini, L. 登録日 2013-10-01 公開日 2014-04-30 最終更新日 2014-06-18 実験手法 X-RAY DIFFRACTION (2.691 Å) 主引用文献 A Ctf4 Trimer Couples the Cmg Helicase to DNA Polymerase Alpha in the Eukaryotic Replisome Nature, 510, 2014
1MC8	Crystal Structure of Flap Endonuclease-1 R42E mutant from Pyrococcus horikoshii 分子名称: Flap Endonuclease-1 著者 Matsui, E, Musti, K.V, Abe, J, Yamazaki, K, Matsui, I, Harata, K. 登録日 2002-08-06 公開日 2002-10-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Molecular Structure and Novel DNA Binding Sites Located in Loops of Flap Endonuclease-1 from Pyrococcus horikoshii J.BIOL.CHEM., 277, 2002
5BQ5	Crystal structure of the IstB AAA+ domain bound to ADP-BeF3 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Insertion sequence IS5376 putative ATP-binding protein, ... 著者 Arias-Palomo, E, Berger, J.M. 登録日 2015-05-28 公開日 2015-09-02 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment. Cell, 162, 2015

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