PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4R29	Crystal structure of bacterial cysteine methyltransferase effector NleE 分子名称: CITRIC ACID, GLYCEROL, S-ADENOSYLMETHIONINE, ... 著者 Yao, Q, Chen, J, Hu, L, Zhang, L, Shao, F. 登録日 2014-08-11 公開日 2014-12-03 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 Structure and Specificity of the Bacterial Cysteine Methyltransferase Effector NleE Suggests a Novel Substrate in Human DNA Repair Pathway. Plos Pathog., 10, 2014
4PPE	human RNF4 RING domain 分子名称: E3 ubiquitin-protein ligase RNF4, ZINC ION 著者 Perry, J.J, Arvai, A.S, Hitomi, C, Tainer, J.A. 登録日 2014-02-26 公開日 2014-03-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response. Embo Rep., 15, 2014
1XX8	NMR Structure of the W24A Mutant of the Hyperthermophile Sac7d Protein 分子名称: Sac7d 著者 Bedell, J.L, Edmondson, S.P, Shriver, J.W. 登録日 2004-11-04 公開日 2005-02-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Role of a surface tryptophan in defining the structure, stability, and DNA binding of the hyperthermophile protein sac7d Biochemistry, 44, 2005
2HW0	NMR Solution Structure of the nuclease domain from the Replicator Initiator Protein from porcine circovirus PCV2 分子名称: Replicase 著者 Vega-Rocha, S, Byeon, I.L, Gronenborn, B, Gronenborn, A.M, Campos-Olivas, R. 登録日 2006-07-31 公開日 2007-06-12 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure, divalent metal and DNA binding of the endonuclease domain from the replication initiation protein from porcine circovirus 2 J.Mol.Biol., 367, 2007
2GJB	Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with the oligonucleotide d(CGTACG) 分子名称: 5'-D(*CP*GP*TP*AP*CP*GP*)-3', N-ACRIDIN-9-YL-N'-[3-(ACRIDIN-9-YLAMINO)PROPYL]PROPANE-1,3-DIAMINE, POTASSIUM ION 著者 Gan, Y, Cardin, C.J, Denny, W.A. 登録日 2006-03-30 公開日 2007-04-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with oligonucleotide d(CGTACG) To be Published
2GP8	NMR SOLUTION STRUCTURE OF THE COAT PROTEIN-BINDING DOMAIN OF BACTERIOPHAGE P22 SCAFFOLDING PROTEIN 分子名称: PROTEIN (SCAFFOLDING PROTEIN) 著者 Sun, Y, Parker, M.H, Weigele, P, Casjens, S, Prevelige Jr, P.E, Krishna, N.R. 登録日 1999-05-11 公開日 1999-05-17 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Structure of the coat protein-binding domain of the scaffolding protein from a double-stranded DNA virus. J.Mol.Biol., 297, 2000
2UVP	Crystal structure of HobA (HP1230)from Helicobacter pylori 分子名称: ACETATE ION, CALCIUM ION, GLYCEROL, ... 著者 Terradot, L, Natrajan, G, Thompson, A.C, Hall, D.R. 登録日 2007-03-13 公開日 2007-08-21 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural similarity between the DnaA-binding proteins HobA (HP1230) from Helicobacter pylori and DiaA from Escherichia coli. Mol. Microbiol., 65, 2007
4S3H	Crystal structure of S. pombe Mdb1 FHA domain 分子名称: Mdb1, SULFATE ION 著者 Luo, S, Ye, K. 登録日 2015-01-26 公開日 2015-07-22 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.701 Å) 主引用文献 Dimerization Mediated by a Divergent Forkhead-associated Domain Is Essential for the DNA Damage and Spindle Functions of Fission Yeast Mdb1. J.Biol.Chem., 290, 2015
2H1C	Crystal Structure of FitAcB from Neisseria gonorrhoeae 分子名称: ACETATE ION, MAGNESIUM ION, SULFATE ION, ... 著者 Mattison, K, Wilbur, J.S, So, M, Brennan, R.G. 登録日 2006-05-16 公開日 2006-09-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs. J.Biol.Chem., 281, 2006
7EF0	Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9M peptide 分子名称: HB transcription factor, Histone H3.2, ZINC ION 著者 Wang, Y, Du, J. 登録日 2021-03-20 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
4LID	A100, A DNA binding scaffold from Sulfolobus spindle-shape virus 1 分子名称: A-100 著者 Eilers, B.J, Wagner, C, Thomas, M.M, Lawrence, C.M, Young, M.J. 登録日 2013-07-02 公開日 2014-09-24 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A100, A DNA binding scaffold from Sulfolobus spindle-shape virus 1 To be Published
5V1A	Structure of S. cerevisiae Ulp2:Csm1 complex 分子名称: Monopolin complex subunit CSM1, Ubiquitin-like-specific protease 2 著者 Singh, N, Corbett, K.D. 登録日 2017-03-01 公開日 2017-05-17 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Recruitment of a SUMO isopeptidase to rDNA stabilizes silencing complexes by opposing SUMO targeted ubiquitin ligase activity. Genes Dev., 31, 2017
3ZEH	Solution structure of the Hs. PSIP1 PWWP domain 分子名称: PC4 AND SFRS1-INTERACTING PROTEIN 著者 van Ingen, H, van Nuland, R, Timmers, H.T.M, Boelens, R. 登録日 2012-12-05 公開日 2013-05-22 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Nucleosomal DNA Binding Drives the Recognition of H3K36-Methylated Nucleosomes by the Psip1-Pwwp Domain. Epigenetics Chromatin, 6, 2013
7EEZ	crystal structure of maize SHH2 SAWADEE domain 分子名称: HB transcription factor, ZINC ION 著者 Wang, Y, Du, J. 登録日 2021-03-20 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.902 Å) 主引用文献 Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
7EF1	crystal structure of maize SHH2 SAWADEE domain in complex with and H3K9me1 peptide 分子名称: HB transcription factor, Histone H3.2, ZINC ION 著者 Wang, Y, Du, J. 登録日 2021-03-20 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
7EF2	Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9me3 peptide 分子名称: HB transcription factor, Histone H3.2, ZINC ION 著者 Wang, Y, Du, J. 登録日 2021-03-20 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
7EF3	crystal structure of maize SHH2 SAWADEE domain in complex with H3K9me2 peptide 分子名称: HB transcription factor, Histone H3.2, ZINC ION 著者 Wang, Y, Du, J. 登録日 2021-03-20 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
1Z9F	Crystal structure of single stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 A resolution 分子名称: Single-strand binding protein 著者 Joint Center for Structural Genomics (JCSG) 登録日 2005-04-01 公開日 2005-04-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of a single-stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 A resolution. Proteins, 63, 2006
1H5W	2.1A Bacteriophage Phi-29 Connector 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, UPPER COLLAR PROTEIN 著者 Guasch, A, Pous, J, Ibarra, B, Gomis-Ruth, F.X, Valpuesta, J.M, Sousa, N, Carrascosa, J.L, Coll, M. 登録日 2001-05-28 公開日 2002-02-13 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Detailed Architecture of a DNA Translocating Machine: The High-Resolution Structure of the Bacteriophage Phi29 Connector Particle. J.Mol.Biol., 315, 2002
1ZTW	d(CTTAATTCGAATTAAG) complexed with Moloney Murine Leukemia Virus Reverse Transcriptase catalytic fragment 分子名称: CTTAATTC, GAATTAAG, Reverse transcriptase 著者 Goodwin, K.D, Long, E.C, Georgiadis, M.M. 登録日 2005-05-27 公開日 2005-08-30 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A host-guest approach for determining drug-DNA interactions: an example using netropsin. Nucleic Acids Res., 33, 2005
5V3N	Structure of S. cerevisiae Ulp2-Tof2-Csm1 complex 分子名称: Monopolin complex subunit CSM1, Ulp2p,Topoisomerase 1-associated factor 2 chimera 著者 SIngh, N, Corbett, K.D. 登録日 2017-03-07 公開日 2017-05-17 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Recruitment of a SUMO isopeptidase to rDNA stabilizes silencing complexes by opposing SUMO targeted ubiquitin ligase activity. Genes Dev., 31, 2017
2AVH	G4T3G4 dimeric quadruplex structure 分子名称: 5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION 著者 Hazel, P, Parkinson, G.N, Neidle, S. 登録日 2005-08-30 公開日 2006-03-28 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Topology variation and loop structural homology in crystal and simulated structures of a bimolecular DNA quadruplex. J.Am.Chem.Soc., 128, 2006
2GWA	Crystal Structure of a Complex Formed Between the DNA Holliday Junction and a Bis-Acridine Molecule. 分子名称: 5'-D(*Tp*Cp*Gp*Gp*Tp*Ap*Cp*Cp*Gp*A)-3', 9,9'-(HEXANE-1,6-DIYLDIIMINO)BIS{N-[2-(DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE}, SPERMINE 著者 Brogden, A.L, Hopcroft, N.H, Cardin, C.J, Searcey, M. 登録日 2006-05-04 公開日 2006-06-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Ligand bridging of the DNA Holliday junction: molecular recognition of a stacked-X four-way junction by a small molecule. Angew.Chem.Int.Ed.Engl., 46, 2007
3GAB	C-terminal domain of Bacillus subtilis MutL crystal form I 分子名称: DNA mismatch repair protein mutL 著者 Guarne, A, Pillon, M.C, Lorenowicz, J.J, Mitchell, R.R, Chung, Y.S, Friedhoff, P. 登録日 2009-02-17 公開日 2010-07-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the endonuclease domain of MutL: unlicensed to cut. Mol.Cell, 39, 2010
3GJK	crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one 分子名称: 5'-D(*CP*GP*CP*GP*AP*A)-3', 5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3', POTASSIUM ION 著者 Takenaka, A, Juan, E.C.M, Shimizu, S, Haraguchi, T, Xiao, M, Kurose, T, Ohkubo, A, Sekine, M, Shibata, T, Millington, C.L, Williams, D.M. 登録日 2009-03-09 公開日 2010-03-31 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Insights into the stabilizing contributions of bicyclic cytosine analogues: crystal structures of DNA duplexes containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one To be Published

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