PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5E6Q	Importin alpha binding to XRCC1 NLS peptide 分子名称: CHLORIDE ION, DNA repair protein XRCC1 NLS peptide, GLYCEROL, ... 著者 Pedersen, L.C, Kirby, T.W, Gassman, N.R, Smith, C.E, Gabel, S.A, Sobhany, M, Wilson, S.H, London, R.E. 登録日 2015-10-10 公開日 2015-10-28 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.305 Å) 主引用文献 Nuclear Localization of the DNA Repair Scaffold XRCC1: Uncovering the Functional Role of a Bipartite NLS. Sci Rep, 5, 2015
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site 分子名称: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2011-12-28 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3GP8	Crystal structure of the binary complex of RecD2 with DNA 分子名称: 5'-D(*TP*TP*TP*TP*TP*T*TP*TP*TP*TP*TP*TP*TP*T)-3', Exodeoxyribonuclease V, subunit RecD, ... 著者 Saikrishnan, K, Cook, N, Wigley, D.B. 登録日 2009-03-23 公開日 2009-06-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mechanistic basis of 5'-3' translocation in SF1B helicases. Cell(Cambridge,Mass.), 137, 2009
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site 分子名称: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2011-12-28 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.298 Å) 主引用文献 How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
2JPC	SSRB DNA Binding Protein 分子名称: SsrB 著者 Liao, X, Kenney, L, Sheng, W, Integrated Center for Structure and Function Innovation (ISFI) 登録日 2007-05-03 公開日 2007-07-03 最終更新日 2023-12-20 実験手法 SOLUTION NMR 主引用文献 SSRB DNA Binding Protein To be Published
1SXP	BGT in complex with a 13mer DNA containing a central A:G mismatch 分子名称: 5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3', DNA beta-glucosyltransferase, ... 著者 Lariviere, L, Morera, S. 登録日 2004-03-31 公開日 2004-06-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase J.Biol.Chem., 279, 2004
4B5H	Substate bound inactive mutant of Neisseria AP endonuclease in presence of metal ions 分子名称: 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*3DRP*CP*AP*TP*CP*GP)-3', MANGANESE (II) ION, ... 著者 Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. 登録日 2012-08-03 公開日 2012-10-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5M	Neisseria AP endonuclease bound to the substrate with a cytosine orphan base 分子名称: 5'-D(*3DRP*CP*AP*TP*CP*GP)-3', 5'-D(*CP*GP*AP*TP*GP*CP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP)-3', ... 著者 Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. 登録日 2012-08-06 公開日 2012-10-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.758 Å) 主引用文献 Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
7UHE	Taf14 ET domain in complex with C-terminal tail of Taf2 分子名称: C-terminal tail of Transcription initiation factor TFIID subunit 2, Transcription initiation factor TFIID subunit 14 著者 Klein, B.J, Kutateladze, T.G. 登録日 2022-03-26 公開日 2022-08-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Taf2 mediates DNA binding of Taf14. Nat Commun, 13, 2022
1DRZ	U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX 分子名称: MAGNESIUM ION, PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A), RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME), ... 著者 Ferre-D'Amare, A.R, Zhou, K, Doudna, J.A. 登録日 1998-09-01 公開日 1999-02-16 最終更新日 2021-11-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of a hepatitis delta virus ribozyme. Nature, 395, 1998
6JFU	Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) 分子名称: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, non-target strand, ... 著者 Sun, W, Yang, J, Cheng, Z, Liu, C, Wang, K, Huang, X, Wang, Y. 登録日 2019-02-12 公開日 2019-11-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States. Mol.Cell, 76, 2019
4D2H	Crystal structure of the tetramerisation domain of human CtIP 分子名称: RBBP8, SULFATE ION 著者 Davies, O.R, Sun, M, Pellegrini, L. 登録日 2014-05-09 公開日 2015-01-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Ctip Tetramer Assembly is Required for DNA-End Resection and Repair. Nat.Struct.Mol.Biol., 22, 2015
3SM4	Crystal Structure of the K131A Mutant of Lambda Exonuclease in Complex with a 5'-Phosphorylated 14-mer/12-mer Duplex and Magnesium 分子名称: 5'-D(*TP*CP*GP*GP*TP*AP*CP*AP*GP*TP*AP*G)-3', 5'-D(P*AP*GP*CP*TP*AP*CP*TP*GP*TP*AP*CP*CP*GP*A)-3', CHLORIDE ION, ... 著者 Bell, C.E, Zhang, J. 登録日 2011-06-27 公開日 2011-07-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Crystal structures of {lambda} exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity. Proc.Natl.Acad.Sci.USA, 108, 2011
6FM4	The crystal structure of S. aureus Gyrase complex with ID-130 and DNA 分子名称: 5'-O-CARBOXY-2'-DEOXYADENOSINE, DNA (5'-5UA*D(P*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*C)-3'), DNA (5'-5UA*D(P*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), ... 著者 Ombrato, R, Garofalo, B, Mangano, G, Mancini, F. 登録日 2018-01-30 公開日 2019-07-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Virtual Screening Approach and Investigation of Structure-Activity Relationships To Discover Novel Bacterial Topoisomerase Inhibitors Targeting Gram-Positive and Gram-Negative Pathogens. J.Med.Chem., 62, 2019
1UUT	The Nuclease Domain of Adeno-Associated Virus Rep Complexed with the RBE' Stemloop of the Viral Inverted Terminal Repeat 分子名称: 5'-D(*CP*AP*GP*CP*TP*CP*TP*TP*TP*GP *AP*GP*CP*TP*G)-3', CHLORIDE ION, MAGNESIUM ION, ... 著者 Dyda, F, Hickman, A.B, Ronning, D.R, Perez, Z.N, Kotin, R.M. 登録日 2004-01-10 公開日 2004-02-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The Nuclease Domain of Adeno-Associated Virus Rep Coordinates Replication Initiation Using Two Distinct DNA Recognition Interfaces Mol.Cell, 13, 2004
2WIW	Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate 分子名称: 5'-D(*DC*DG*DG*DA*DT*DA*DT*DC*DC*DGP)-3', GLYCEROL, HEXANE-1,6-DIOL, ... 著者 Carolis, C, Koehler, C, Sauter, C, Basquin, J, Suck, D, Toeroe, I. 登録日 2009-05-18 公開日 2009-05-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate To be Published
4QIO	Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCGGCGCCIA) at high resolution 分子名称: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*IP*A)-3', BARIUM ION, CHLORIDE ION, ... 著者 Gurung, S.P, Hall, J.P, Cardin, C.J. 登録日 2014-06-01 公開日 2015-06-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (0.95 Å) 主引用文献 Inosine Can Increase DNA's Susceptibility to Photo-oxidation by a Ru II Complex due to Structural Change in the Minor Groove. Chemistry, 23, 2017
4B5I	Product complex of Neisseria AP endonuclease in presence of metal ions 分子名称: 5'-D(*3DRP*CP*AP*TP*CP*GP)-3', 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP)-3', ... 著者 Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. 登録日 2012-08-03 公開日 2012-10-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.555 Å) 主引用文献 Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5J	Neisseria AP endonuclease bound to the substrate with an orphan Adenine base 分子名称: 5'-D(*CP*GP*AP*TP*GP*AP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*(3DR)P*CP*AP*TP*CP*GP)-3', PUTATIVE EXODEOXYRIBONUCLEASE 著者 Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. 登録日 2012-08-03 公開日 2012-10-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5G	Substrate bound Neisseria AP endonuclease in absence of metal ions (crystal form 2) 分子名称: 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*(3DR)P*CP*AP*TP*CP*GP)-3', EXODEOXYRIBONUCLEASE 著者 Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. 登録日 2012-08-03 公開日 2012-10-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5F	Substrate bound Neisseria AP endonuclease in absence of metal ions (crystal form 1) 分子名称: 5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*3DRP*GP*AP*TP*CP*GP)-3', PUTATIVE EXODEOXYRIBONUCLEASE 著者 Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. 登録日 2012-08-03 公開日 2012-10-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.005 Å) 主引用文献 Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
2KHS	Solution structure of SNase121:SNase(111-143) complex 分子名称: Nuclease, Thermonuclease 著者 Geng, Y, Feng, Y, Xie, T, Shan, L, Wang, J. 登録日 2009-04-10 公開日 2009-10-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The native-like interactions between SNase121 and SNase(111-143) fragments induce the recovery of their native-like structures and the ability to degrade DNA. Biochemistry, 48, 2009
3TND	Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex 分子名称: Antitoxin VapB, SODIUM ION, SULFATE ION, ... 著者 Dienemann, C, Boggild, A, Winther, K.S, Gerdes, K, Brodersen, D.E. 登録日 2011-09-01 公開日 2011-11-02 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of the VapBC Toxin-Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly. J.Mol.Biol., 414, 2011
7VJQ	Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate 分子名称: CHLORIDE ION, DNA (27-MER), GLYCEROL, ... 著者 Liu, Y.H, Zhang, L.S, Wu, B.X, Huang, H.D. 登録日 2021-09-28 公開日 2021-10-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2. J.Biol.Chem., 297, 2021
1TL6	Solution structure of T4 bacteriphage AsiA monomer 分子名称: 10 kDa anti-sigma factor 著者 Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H. 登録日 2004-06-09 公開日 2005-06-21 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 T4 AsiA blocks DNA recognition by remodeling sigma70 region 4 Embo J., 23, 2004

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