PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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4A3F	RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP 分子名称: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DTP *TP*TP*CP*C BRU*GP*GP*TP*CP*AP*TP*T)-3', DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, ... 著者 Cheung, A.C.M, Sainsbury, S, Cramer, P. 登録日 2011-09-30 公開日 2011-12-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
7ZX7	Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (CC) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. 登録日 2022-05-20 公開日 2022-11-30 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
8OKI	Cryo-EM structure of Pyrococcus furiosus transcription elongation complex bound to Spt4/5 分子名称: DNA Non-Template Strand, DNA Template Strand, DNA-directed RNA polymerase subunit Rpo10, ... 著者 Tarau, D.M, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. 登録日 2023-03-28 公開日 2024-04-24 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024
8ANA	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit 分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 23S ribosomal RNA, 50S ribosomal protein L13, ... 著者 Koller, T.O, Morici, M, Wilson, D.N. 登録日 2022-08-05 公開日 2023-03-08 最終更新日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 Structural basis for translation inhibition by the glycosylated drosocin peptide. Nat.Chem.Biol., 19, 2023
4B2R	Solution structure of CCP modules 10-11 of complement factor H 分子名称: COMPLEMENT FACTOR H 著者 Makou, E, Mertens, H.D.T, Maciejewski, M, Soares, D.C, Matis, I, Schmidt, C.Q, Herbert, A.P, Svergun, D.I, Barlow, P.N. 登録日 2012-07-17 公開日 2012-10-10 最終更新日 2019-09-25 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Ccp Modules 10-12 Illuminates Functional Architecture of the Complement Regulator, Factor H. J.Mol.Biol., 424, 2012
7ZI4	Cryo-EM structure of the human INO80 complex bound to a WT nucleosome 分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-related protein 5, BERYLLIUM TRIFLUORIDE ION, ... 著者 Vance, N.R, Ayala, R, Willhoft, O, Tvardovskiy, A, McCormack, E.A, Bartke, T, Zhang, X, Wigley, D.B. 登録日 2022-04-07 公開日 2023-04-19 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structure of the human INO80 complex bound to a WT nucleosome To Be Published
6RYU	Nucleosome-CHD4 complex structure (two CHD4 copies) 分子名称: Chromodomain-helicase-DNA-binding protein 4,CHD4,Chromodomain-helicase-DNA-binding protein 4, DNA (149-MER), Histone H2A type 1, ... 著者 Farnung, L, Ochmann, M, Cramer, P. 登録日 2019-06-12 公開日 2020-07-15 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Nucleosome-CHD4 chromatin remodeller structure maps human disease mutations. Elife, 9, 2020
6RQC	Cryo-EM structure of an MCM loading intermediate 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (88-MER), ... 著者 Miller, T.C.R, Locke, J, Costa, A. 登録日 2019-05-15 公開日 2019-11-20 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Mechanism of head-to-head MCM double-hexamer formation revealed by cryo-EM. Nature, 575, 2019
8BTK	Structure of the TRAP complex with the Sec translocon and a translating ribosome 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Jaskolowski, M, Jomaa, A, Gamerdinger, M, Shrestha, S, Leibundgut, M, Deuerling, E, Ban, N. 登録日 2022-11-29 公開日 2023-05-24 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Molecular basis of the TRAP complex function in ER protein biogenesis. Nat.Struct.Mol.Biol., 30, 2023
6RNY	PFV intasome - nucleosome strand transfer complex 分子名称: DNA (108-MER), DNA (128-MER), DNA (33-MER), ... 著者 Pye, V.E, Renault, L, Maskell, D.P, Cherepanov, P, Costa, A. 登録日 2019-05-09 公開日 2019-09-25 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer. Nat Commun, 10, 2019
4A3L	RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP 分子名称: 5'-D(*AP*AP*GP*TP*AP*CP*TP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*AP*CP*CP*AP*GP*GP*AP)-3', ... 著者 Cheung, A.C.M, Sainsbury, S, Cramer, P. 登録日 2011-09-30 公開日 2011-12-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3K	RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid 分子名称: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DTP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP)-3', 5'-R(*AP*CP*CP*AP*GP*GP*AP)-3', ... 著者 Cheung, A.C.M, Sainsbury, S, Cramer, P. 登録日 2011-09-30 公開日 2011-12-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural Basis of Initial RNA Polymerase II Transcription. Embo J., 30, 2011
8I7J	Yeast 40S-eIF4B - partially open conformation of the 40S head 分子名称: 40S ribosomal protein S0, 40S ribosomal protein S1, 40S ribosomal protein S12, ... 著者 Datey, A, Khaja, F.T, Hussain, T. 登録日 2023-01-31 公開日 2024-02-07 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Yeast eukaryotic initiation factor 4B remodels the mRNA entry site on the small ribosomal subunit To Be Published
4A3C	RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Cheung, A.C.M, Sainsbury, S, Cramer, P. 登録日 2011-09-30 公開日 2011-11-16 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3D	RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Cheung, A.C.M, Sainsbury, S, Cramer, P. 登録日 2011-09-30 公開日 2011-12-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
5T2A	CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution 分子名称: 18S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Zhang, X, Lai, M, Zhou, Z.H. 登録日 2016-08-23 公開日 2017-01-25 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. Nat Commun, 7, 2016
4BBR	Structure of RNA polymerase II-TFIIB complex 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Sainsbury, S, Niesser, J, Cramer, P. 登録日 2012-09-27 公開日 2012-11-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
5TGA	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ... 著者 Melnikov, S, Mailliot, J. 登録日 2016-09-27 公開日 2016-11-23 最終更新日 2016-12-14 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016
7YI4	Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state 分子名称: Chromatin modification-related protein EAF3, Histone H2A, Histone H2B 1.1, ... 著者 Li, H.T, Yan, C.Y, Guan, H.P, Wang, P. 登録日 2022-07-14 公開日 2023-06-14 最終更新日 2023-08-30 実験手法 ELECTRON MICROSCOPY (3.96 Å) 主引用文献 Diverse modes of H3K36me3-guided nucleosomal deacetylation by Rpd3S. Nature, 620, 2023
7YI5	Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in loose state 分子名称: Chromatin modification-related protein EAF3, Histone H2A, Histone H2B 1.1, ... 著者 Li, H.T, Yan, C.Y, Guan, H.P, Wang, P. 登録日 2022-07-14 公開日 2023-06-14 最終更新日 2023-08-30 実験手法 ELECTRON MICROSCOPY (3.96 Å) 主引用文献 Diverse modes of H3K36me3-guided nucleosomal deacetylation by Rpd3S. Nature, 620, 2023
8OO0	Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S0, ... 著者 Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. 登録日 2023-04-04 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
8OO7	CryoEM Structure INO80core Hexasome complex composite model state1 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 5, ... 著者 Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. 登録日 2023-04-04 公開日 2023-07-26 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8P4E	Structural insights into human co-transcriptional capping - structure 5 分子名称: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, DNA (26-MER), DNA (35-MER), ... 著者 Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. 登録日 2023-05-20 公開日 2023-07-19 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
8PEP	H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex - pose 2 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Veverka, V. 登録日 2023-06-14 公開日 2023-08-16 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
2J59	Crystal structure of the ARF1:ARHGAP21-ArfBD complex 分子名称: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, ADP-RIBOSYLATION FACTOR 1, ... 著者 Menetrey, J, Perderiset, M, Cicolari, J, Dubois, T, El Khatib, N, El Khadali, F, Franco, M, Chavrier, P, Houdusse, A. 登録日 2006-09-13 公開日 2007-02-20 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis for Arf1-Mediated Recruitment of Arhgap21 to Golgi Membranes. Embo J., 26, 2007

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