PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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4OFE	Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis 分子名称: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ... 著者 Ouzon-Shubeita, H, Lin, Y.-L, Lee, S. 登録日 2014-01-14 公開日 2015-04-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure of R468K/D560N MBD4 bound to G:T mispair DNA To be Published
3QF3	Crystal structure of EspR transcription factor from mycobacterium tuberculosis 分子名称: (2S)-2-hydroxybutanedioic acid, D-MALATE, ESX-1 secretion-associated regulator EspR 著者 Blasco, B, Pojer, F, Cole, S.T. 登録日 2011-01-21 公開日 2011-09-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.41 Å) 主引用文献 Atypical DNA recognition mechanism used by the EspR virulence regulator of Mycobacterium tuberculosis. Mol.Microbiol., 82, 2011
4NJ5	Crystal structure of SUVH9 分子名称: Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9, ZINC ION 著者 Du, J, Patel, D.J. 登録日 2013-11-08 公開日 2014-01-22 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature, 507, 2014
7R8J	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA in the presence of Mg2+ 分子名称: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') 著者 Shin, Y, Murakami, K.S. 登録日 2021-06-26 公開日 2022-07-06 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
7R8G	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' OH guide DNA 分子名称: Argonaute, DNA (5'-D(*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') 著者 Shin, Y, Murakami, K.S. 登録日 2021-06-26 公開日 2022-07-06 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
7R8H	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA 分子名称: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') 著者 Shin, Y, Murakami, K.S. 登録日 2021-06-26 公開日 2022-07-06 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
2ME0	NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens solved in the presence of the DNA sequence CGACTAATTAGTCG 分子名称: Homeobox protein GBX-1 著者 Proudfoot, A, Serrano, P, Geralt, M, Wuthrich, K, Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL) 登録日 2013-09-20 公開日 2013-10-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens solved in the presence of the DNA sequence CGACTAATTAGTCG To be Published
1Z5Z	Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain 分子名称: Helicase of the snf2/rad54 family 著者 Duerr, H, Koerner, C, Mueller, M, Hickmann, V, Hopfner, K.P. 登録日 2005-03-21 公開日 2005-05-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA Cell(Cambridge,Mass.), 121, 2005
4DDT	Thermotoga maritima reverse gyrase, C2 FORM 2 分子名称: Reverse gyrase, ZINC ION 著者 Rudolph, M.G, Klostermeier, D. 登録日 2012-01-19 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling. Nucleic Acids Res., 41, 2013
4DDV	Thermotoga maritima reverse gyrase, triclinic form 分子名称: Reverse gyrase, ZINC ION 著者 Rudolph, M.G, Klostermeier, D. 登録日 2012-01-19 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.46 Å) 主引用文献 Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling. Nucleic Acids Res., 41, 2013
5M31	Macrodomain of Thermus aquaticus DarG 分子名称: Appr-1-p processing domain protein, CHLORIDE ION, GLYCEROL 著者 Ariza, A. 登録日 2016-10-13 公開日 2016-12-21 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 The Toxin-Antitoxin System DarTG Catalyzes Reversible ADP-Ribosylation of DNA. Mol. Cell, 64, 2016
4FHC	Spore photoproduct lyase 分子名称: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... 著者 Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. 登録日 2012-06-06 公開日 2012-07-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
5WQV	Crystal structure of PriB mutant - S55A 分子名称: Primosomal replication protein N 著者 Fujiyama, S, Shiroishi, M, Katayama, T, Abe, Y, Ueda, T. 登録日 2016-11-28 公開日 2017-11-29 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Insight into the interaction between PriB and DnaT on bacterial DNA replication restart: Significance of the residues on PriB dimer interface and highly acidic region on DnaT. Biochim Biophys Acta Proteins Proteom, 1867, 2019
4FHE	Spore photoproduct lyase C140A mutant 分子名称: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... 著者 Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. 登録日 2012-06-06 公開日 2012-07-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
5OHQ	Crystal structure of the KOW6-KOW7 domain of human DSIF 分子名称: CHLORIDE ION, SODIUM ION, Transcription elongation factor SPT5 著者 Bernecky, C, Plitzko, J.M, Cramer, P. 登録日 2017-07-17 公開日 2017-09-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.098 Å) 主引用文献 Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
4FHF	Spore photoproduct lyase C140A mutant with dinucleoside spore photoproduct 分子名称: 1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione, IRON/SULFUR CLUSTER, PYROPHOSPHATE 2-, ... 著者 Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. 登録日 2012-06-06 公開日 2012-07-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
4DDW	Thermotoga maritima reverse gyrase, c-centered orthorhombic form 分子名称: MAGNESIUM ION, PYROPHOSPHATE 2-, Reverse gyrase, ... 著者 Rudolph, M.G, Klostermeier, D. 登録日 2012-01-19 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling. Nucleic Acids Res., 41, 2013
3QWG	Crystal structure of EspRdelta10, C-terminal 10 amino acids deletion mutant of EspR transcription factor from Mycobacterium tuberculosis 分子名称: ESX-1 secretion-associated regulator EspR 著者 Blasco, B, Pojer, F, Cole, S.T. 登録日 2011-02-28 公開日 2011-09-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.992 Å) 主引用文献 Atypical DNA recognition mechanism used by the EspR virulence regulator of Mycobacterium tuberculosis. Mol.Microbiol., 82, 2011
3EBE	Crystal structure of xenopus laevis replication initiation factor MCM10 internal domain 分子名称: Protein MCM10 homolog, ZINC ION 著者 Warren, E.M, Eichman, B.F. 登録日 2008-08-27 公開日 2008-12-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for DNA binding by replication initiator mcm10. Structure, 16, 2008
8BT1	YdaT transcription regulator (CII functional analog) 分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ... 著者 Prolic-Kalinsek, M, Loris, R. 登録日 2022-11-27 公開日 2023-02-22 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.39788437 Å) 主引用文献 Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7. Acta Crystallogr D Struct Biol, 79, 2023
4O67	Human cyclic GMP-AMP synthase (cGAS) in complex with GAMP 分子名称: Cyclic GMP-AMP synthase, ZINC ION, cGAMP 著者 Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. 登録日 2013-12-20 公開日 2014-02-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.444 Å) 主引用文献 The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
4O68	Structure of human cyclic GMP-AMP synthase (cGAS) 分子名称: Cyclic GMP-AMP synthase, ZINC ION 著者 Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. 登録日 2013-12-20 公開日 2014-02-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.436 Å) 主引用文献 The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
4O69	Human cyclic GMP-AMP synthase (cGAS) in complex with sulfate ion 分子名称: Cyclic GMP-AMP synthase, SULFATE ION, ZINC ION 著者 Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. 登録日 2013-12-20 公開日 2014-02-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.252 Å) 主引用文献 The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
1J54	Structure of the N-terminal exonuclease domain of the epsilon subunit of E.coli DNA polymerase III at pH 5.8 分子名称: 1,2-ETHANEDIOL, DNA polymerase III, epsilon chain, ... 著者 Hamdan, S, Carr, P.D, Brown, S.E, Ollis, D.L, Dixon, N.E. 登録日 2002-01-22 公開日 2002-10-16 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome Structure, 10, 2002
1ZBB	Structure of the 4_601_167 Tetranucleosome 分子名称: DNA STRAND 1 (ARBITRARY MODEL SEQUENCE), DNA STRAND 2 (ARBITRARY MODEL SEQUENCE), HISTONE H3, ... 著者 Schalch, T, Duda, S, Sargent, D.F, Richmond, T.J. 登録日 2005-04-08 公開日 2005-07-12 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (9 Å) 主引用文献 X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature, 436, 2005

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